Wall clock time and date at job start Mon Mar 30 2020 07:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 C 1.53003 * 109.47060 * 120.00105 * 2 1 3 5 5 N 1.46497 * 109.47288 * 173.65215 * 4 2 1 6 6 C 1.46499 * 120.00290 * 276.17029 * 5 4 2 7 7 C 1.50701 * 109.46823 * 270.00054 * 6 5 4 8 8 H 1.08002 * 120.00098 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00251 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99399 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00511 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47381 * 89.99746 * 11 9 7 13 13 H 1.48500 * 109.47514 * 210.00035 * 11 9 7 14 14 H 1.48503 * 109.47225 * 330.00146 * 11 9 7 15 15 C 1.34785 * 119.99917 * 96.16559 * 5 4 2 16 16 O 1.21279 * 119.99528 * 175.01910 * 15 5 4 17 17 C 1.50699 * 120.00016 * 355.02103 * 15 5 4 18 18 C 1.52999 * 109.46994 * 173.58080 * 17 15 5 19 19 C 1.52999 * 112.99847 * 300.44768 * 18 17 15 20 20 C 1.54037 * 113.92709 * 72.38226 * 18 17 15 21 21 O 1.44181 * 85.51808 * 136.81303 * 20 18 17 22 22 C 1.44177 * 93.33807 * 335.80958 * 21 20 18 23 23 H 1.08999 * 109.47163 * 300.00023 * 1 2 3 24 24 H 1.08994 * 109.46887 * 59.99790 * 1 2 3 25 25 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46829 * 239.99562 * 2 1 3 27 27 H 1.09003 * 109.47401 * 60.47593 * 3 2 1 28 28 H 1.09002 * 109.47266 * 180.47612 * 3 2 1 29 29 H 1.09000 * 109.46961 * 300.47587 * 3 2 1 30 30 H 1.08996 * 109.47573 * 53.64755 * 4 2 1 31 31 H 1.09005 * 109.47110 * 293.65271 * 4 2 1 32 32 H 1.09003 * 109.46727 * 29.99149 * 6 5 4 33 33 H 1.08993 * 109.47708 * 149.99945 * 6 5 4 34 34 H 0.96997 * 119.99473 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.47124 * 53.57627 * 17 15 5 36 36 H 1.09002 * 109.46764 * 293.57873 * 17 15 5 37 37 H 1.08996 * 109.47156 * 293.88202 * 19 18 17 38 38 H 1.08998 * 109.47130 * 53.88706 * 19 18 17 39 39 H 1.09005 * 109.46918 * 173.88188 * 19 18 17 40 40 H 1.08998 * 113.86327 * 250.96627 * 20 18 17 41 41 H 1.09003 * 113.86045 * 22.67113 * 20 18 17 42 42 H 1.09002 * 113.86477 * 270.04070 * 22 21 20 43 43 H 1.09003 * 113.98371 * 138.35255 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4970 -0.8550 1.1754 6 6 4.0938 -1.9669 0.4314 7 6 4.2852 -3.1432 1.3538 8 1 3.9920 -3.0696 2.3907 9 6 4.8346 -4.3133 0.8742 10 7 5.1912 -4.4029 -0.3886 11 14 5.0725 -5.7710 2.0176 12 1 3.8567 -6.6233 1.9927 13 1 6.2437 -6.5662 1.5690 14 1 5.3061 -5.2825 3.4004 15 6 4.2885 0.0451 1.7919 16 8 5.4906 -0.1147 1.8076 17 6 3.6796 1.2500 2.4617 18 6 4.7671 2.0184 3.2153 19 6 5.4574 1.1770 4.2907 20 6 5.7436 2.7793 2.2987 21 8 5.6088 3.8610 3.2424 22 6 4.3203 3.4088 3.7050 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6838 1.9539 0.8942 28 1 3.1300 1.4424 -0.0085 29 1 1.6698 1.9587 -0.8857 30 1 1.5869 -1.7108 1.3080 31 1 1.7724 -0.1460 2.1356 32 1 3.4338 -2.2515 -0.3881 33 1 5.0593 -1.6590 0.0302 34 1 5.5780 -5.2260 -0.7260 35 1 2.9111 0.9260 3.1634 36 1 3.2331 1.8980 1.7075 37 1 4.7430 0.9362 5.0778 38 1 5.8323 0.2553 3.8457 39 1 6.2889 1.7403 4.7145 40 1 6.7433 2.3466 2.2636 41 1 5.3387 3.0024 1.3116 42 1 3.4808 3.8241 3.1473 43 1 4.1891 3.4748 4.7851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930901507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:07 Heat of formation + Delta-G solvation = -59.036652 kcal Electronic energy + Delta-G solvation = -22187.260041 eV Core-core repulsion = 19040.684861 eV Total energy + Delta-G solvation = -3146.575180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77057 -38.96662 -36.34288 -33.83588 -32.72621 -32.25869 -28.77754 -27.32863 -26.74361 -26.44050 -25.75295 -25.17827 -22.64450 -20.28049 -19.01772 -18.03782 -16.73597 -16.47328 -15.95338 -15.86834 -15.32309 -15.09925 -14.78673 -14.47931 -14.02732 -13.54268 -13.38724 -12.99810 -12.70990 -12.35623 -12.19558 -12.12857 -12.03629 -11.73087 -11.65217 -11.35125 -11.12260 -10.92793 -10.79349 -10.70823 -10.58924 -10.53432 -10.41548 -10.14733 -10.10244 -9.60327 -9.52665 -8.75647 -8.43494 -7.62330 -6.04333 -4.08575 3.29268 3.36098 3.39010 3.44916 3.81510 3.88434 4.37873 4.46511 4.86480 5.00884 5.04147 5.09345 5.20688 5.24253 5.29706 5.37589 5.49447 5.52504 5.62826 5.67005 5.72544 5.80749 5.84101 5.90448 5.99498 6.04499 6.08971 6.14515 6.16822 6.24296 6.26502 6.31144 6.41446 6.52505 6.67488 7.07651 7.43821 7.56425 7.92338 8.24196 8.44771 8.91171 9.12320 9.56546 11.03676 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.006504 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.334184 B = 4304.099870 C = 5526.749942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.151 4.151 4 C 0.115 3.885 5 N -0.596 5.596 6 C 0.248 3.752 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.507 3.493 16 O -0.536 6.536 17 C -0.154 4.154 18 C -0.104 4.104 19 C -0.135 4.135 20 C 0.053 3.947 21 O -0.386 6.386 22 C 0.039 3.961 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 12.899 4.090 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.208 4.208 4 C -0.009 4.009 5 N -0.327 5.327 6 C 0.129 3.871 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.294 3.706 16 O -0.413 6.413 17 C -0.194 4.194 18 C -0.105 4.105 19 C -0.192 4.192 20 C -0.024 4.024 21 O -0.305 6.305 22 C -0.038 4.038 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.781 12.878 4.024 15.575 hybrid contribution -0.161 -1.121 0.449 1.219 sum -7.943 11.757 4.473 14.877 Atomic orbital electron populations 1.21760 0.95049 1.01874 1.01352 1.21568 0.95432 0.96389 1.00249 1.22088 1.01391 0.96224 1.01096 1.21545 0.81915 1.00998 0.96452 1.48230 1.05157 1.27443 1.51917 1.19223 0.94351 0.82483 0.91056 1.21422 1.41224 0.97070 0.96435 0.92561 1.24928 0.95309 0.98717 0.95169 1.69933 1.42513 1.27366 1.13660 0.86524 0.77666 0.82301 0.81088 1.20698 1.21119 1.19935 1.20193 0.87265 0.83642 0.79476 1.90633 1.14695 1.76714 1.59300 1.22276 0.99059 0.97229 1.00796 1.23333 0.95558 0.94834 0.96743 1.21694 0.99763 1.01200 0.96538 1.23998 1.01353 0.84457 0.92571 1.89622 1.34314 1.50875 1.55675 1.24097 0.87360 0.91944 1.00448 0.92896 0.92850 0.92430 0.90417 0.92645 0.92279 0.92945 0.90245 0.91549 0.95187 0.94094 0.92776 0.89454 0.87871 0.92902 0.89281 0.92452 0.88552 0.90670 0.90531 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.12 -1.53 3.11 -90.62 -0.28 -1.81 16 3 C -0.15 -1.76 7.37 37.15 0.27 -1.49 16 4 C 0.12 1.78 4.88 -4.04 -0.02 1.76 16 5 N -0.60 -11.96 2.27 -175.06 -0.40 -12.36 16 6 C 0.25 6.31 5.14 -5.19 -0.03 6.28 16 7 C -0.52 -14.60 9.39 -34.44 -0.32 -14.93 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 11 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 15 C 0.51 9.85 6.24 -10.98 -0.07 9.78 16 16 O -0.54 -12.52 13.20 5.56 0.07 -12.45 16 17 C -0.15 -2.15 3.57 -27.88 -0.10 -2.25 16 18 C -0.10 -1.45 0.78 -153.43 -0.12 -1.57 16 19 C -0.14 -2.02 8.86 37.16 0.33 -1.70 16 20 C 0.05 0.78 7.58 37.61 0.29 1.06 16 21 O -0.39 -5.72 12.37 -35.23 -0.44 -6.15 16 22 C 0.04 0.45 8.36 37.61 0.31 0.77 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 27 H 0.05 0.55 6.95 -51.93 -0.36 0.18 16 28 H 0.06 0.81 5.95 -51.93 -0.31 0.50 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 31 H 0.07 0.86 6.07 -51.93 -0.32 0.54 16 32 H 0.03 0.78 7.98 -51.93 -0.41 0.36 16 33 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.09 1.08 6.89 -51.93 -0.36 0.73 16 36 H 0.10 1.25 4.03 -51.93 -0.21 1.04 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16 39 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 40 H 0.10 1.53 8.10 -51.93 -0.42 1.11 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 43 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -31.78 336.67 -6.73 -38.50 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.26 Total: -0.06 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 0.51 Total: -3.63 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.34 Total: -38.08 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.36 Total: -18.60 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.78 -6.73 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.536 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds