Wall clock time and date at job start Mon Mar 30 2020 07:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47319 * 2 1 4 4 C 1.53003 * 109.47060 * 120.00105 * 2 1 3 5 5 N 1.46497 * 109.47288 * 173.65215 * 4 2 1 6 6 C 1.46499 * 120.00290 * 276.17029 * 5 4 2 7 7 C 1.50701 * 109.46823 * 270.00054 * 6 5 4 8 8 H 1.08002 * 120.00098 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00251 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99399 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 120.00511 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47381 * 89.99746 * 11 9 7 13 13 H 1.48500 * 109.47514 * 210.00035 * 11 9 7 14 14 H 1.48503 * 109.47225 * 330.00146 * 11 9 7 15 15 C 1.34785 * 119.99917 * 96.16559 * 5 4 2 16 16 O 1.21279 * 119.99528 * 175.01910 * 15 5 4 17 17 C 1.50699 * 120.00016 * 355.02103 * 15 5 4 18 18 C 1.52999 * 109.46994 * 173.58080 * 17 15 5 19 19 C 1.52999 * 112.99847 * 300.44768 * 18 17 15 20 20 C 1.54037 * 113.92709 * 72.38226 * 18 17 15 21 21 O 1.44181 * 85.51808 * 136.81303 * 20 18 17 22 22 C 1.44177 * 93.33807 * 335.80958 * 21 20 18 23 23 H 1.08999 * 109.47163 * 300.00023 * 1 2 3 24 24 H 1.08994 * 109.46887 * 59.99790 * 1 2 3 25 25 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46829 * 239.99562 * 2 1 3 27 27 H 1.09003 * 109.47401 * 60.47593 * 3 2 1 28 28 H 1.09002 * 109.47266 * 180.47612 * 3 2 1 29 29 H 1.09000 * 109.46961 * 300.47587 * 3 2 1 30 30 H 1.08996 * 109.47573 * 53.64755 * 4 2 1 31 31 H 1.09005 * 109.47110 * 293.65271 * 4 2 1 32 32 H 1.09003 * 109.46727 * 29.99149 * 6 5 4 33 33 H 1.08993 * 109.47708 * 149.99945 * 6 5 4 34 34 H 0.96997 * 119.99473 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.47124 * 53.57627 * 17 15 5 36 36 H 1.09002 * 109.46764 * 293.57873 * 17 15 5 37 37 H 1.08996 * 109.47156 * 293.88202 * 19 18 17 38 38 H 1.08998 * 109.47130 * 53.88706 * 19 18 17 39 39 H 1.09005 * 109.46918 * 173.88188 * 19 18 17 40 40 H 1.08998 * 113.86327 * 250.96627 * 20 18 17 41 41 H 1.09003 * 113.86045 * 22.67113 * 20 18 17 42 42 H 1.09002 * 113.86477 * 270.04070 * 22 21 20 43 43 H 1.09003 * 113.98371 * 138.35255 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4970 -0.8550 1.1754 6 6 4.0938 -1.9669 0.4314 7 6 4.2852 -3.1432 1.3538 8 1 3.9920 -3.0696 2.3907 9 6 4.8346 -4.3133 0.8742 10 7 5.1912 -4.4029 -0.3886 11 14 5.0725 -5.7710 2.0176 12 1 3.8567 -6.6233 1.9927 13 1 6.2437 -6.5662 1.5690 14 1 5.3061 -5.2825 3.4004 15 6 4.2885 0.0451 1.7919 16 8 5.4906 -0.1147 1.8076 17 6 3.6796 1.2500 2.4617 18 6 4.7671 2.0184 3.2153 19 6 5.4574 1.1770 4.2907 20 6 5.7436 2.7793 2.2987 21 8 5.6088 3.8610 3.2424 22 6 4.3203 3.4088 3.7050 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6838 1.9539 0.8942 28 1 3.1300 1.4424 -0.0085 29 1 1.6698 1.9587 -0.8857 30 1 1.5869 -1.7108 1.3080 31 1 1.7724 -0.1460 2.1356 32 1 3.4338 -2.2515 -0.3881 33 1 5.0593 -1.6590 0.0302 34 1 5.5780 -5.2260 -0.7260 35 1 2.9111 0.9260 3.1634 36 1 3.2331 1.8980 1.7075 37 1 4.7430 0.9362 5.0778 38 1 5.8323 0.2553 3.8457 39 1 6.2889 1.7403 4.7145 40 1 6.7433 2.3466 2.2636 41 1 5.3387 3.0024 1.3116 42 1 3.4808 3.8241 3.1473 43 1 4.1891 3.4748 4.7851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930901507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:06 Heat of formation + Delta-G solvation = -79.536072 kcal Electronic energy + Delta-G solvation = -22188.148962 eV Core-core repulsion = 19040.684861 eV Total energy + Delta-G solvation = -3147.464101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93410 -40.39097 -37.69120 -35.55572 -34.10393 -33.94754 -30.30888 -28.84252 -27.74292 -27.44953 -26.93512 -26.63512 -24.54683 -21.41148 -20.31502 -19.34409 -18.57563 -18.09883 -17.30416 -16.99434 -16.72848 -16.44960 -16.24814 -15.82127 -15.47814 -14.73068 -14.52821 -14.48402 -14.15882 -13.77515 -13.52557 -13.40816 -13.20764 -13.07230 -12.92216 -12.77762 -12.65211 -12.55645 -12.35176 -12.18311 -11.90492 -11.78987 -11.64202 -11.59447 -11.47149 -11.23509 -10.64229 -10.59513 -10.31526 -9.32607 -8.21863 -6.36312 1.34445 1.37438 1.47525 1.93266 2.31396 2.46832 2.78525 3.07182 3.26647 3.76939 3.82026 3.95829 4.06586 4.15105 4.23548 4.35046 4.42713 4.48213 4.61740 4.67194 4.70771 4.75701 4.85028 4.90544 4.94128 4.97167 5.02979 5.06915 5.08705 5.09266 5.19365 5.25574 5.28009 5.33218 5.42923 5.45363 5.52989 5.61032 5.90291 6.08534 6.72102 6.88964 7.30312 7.58977 8.84620 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.006504 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.334184 B = 4304.099870 C = 5526.749942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.149 4.149 4 C 0.110 3.890 5 N -0.602 5.602 6 C 0.267 3.733 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.930 5.930 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.274 1.274 15 C 0.498 3.502 16 O -0.586 6.586 17 C -0.137 4.137 18 C -0.110 4.110 19 C -0.132 4.132 20 C 0.047 3.953 21 O -0.405 6.405 22 C 0.052 3.948 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.016 0.984 33 H -0.006 1.006 34 H 0.266 0.734 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 14.445 5.902 19.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.205 4.205 4 C -0.012 4.012 5 N -0.333 5.333 6 C 0.145 3.855 7 C -0.576 4.576 8 H 0.070 0.930 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.288 3.712 16 O -0.466 6.466 17 C -0.176 4.176 18 C -0.111 4.111 19 C -0.189 4.189 20 C -0.030 4.030 21 O -0.324 6.324 22 C -0.024 4.024 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.034 0.966 33 H 0.012 0.988 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.550 14.447 5.844 18.819 hybrid contribution 0.709 -1.585 -0.143 1.742 sum -9.842 12.861 5.701 17.169 Atomic orbital electron populations 1.21713 0.92368 1.02084 1.03173 1.21501 0.97521 0.96837 0.97425 1.22074 0.99766 0.95295 1.03411 1.21852 0.78742 1.01320 0.99312 1.48214 1.07399 1.26252 1.51429 1.18593 0.92164 0.83786 0.90951 1.21703 1.41288 0.98155 0.96419 0.93043 1.25839 0.94869 1.01758 0.96739 1.70056 1.43180 1.28286 1.15444 0.85458 0.78202 0.78741 0.78677 1.18824 1.20754 1.19837 1.21234 0.86726 0.84605 0.78651 1.90620 1.17147 1.77949 1.60927 1.22276 0.99323 0.94603 1.01429 1.23382 0.95416 0.96007 0.96293 1.21612 1.00494 0.99514 0.97282 1.23963 1.00534 0.85042 0.93419 1.89608 1.36332 1.50743 1.55730 1.24321 0.86926 0.88922 1.02209 0.90411 0.91647 0.93122 0.93888 0.89493 0.94770 0.91511 0.91800 0.87776 0.96590 0.98808 0.92527 0.86549 0.85175 0.90772 0.93527 0.92407 0.91118 0.89721 0.87341 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 2 C -0.11 -2.81 3.11 -10.79 -0.03 -2.84 16 3 C -0.15 -3.03 7.37 71.98 0.53 -2.50 16 4 C 0.11 3.27 4.88 86.38 0.42 3.69 16 5 N -0.60 -24.69 2.27 -826.15 -1.87 -26.56 16 6 C 0.27 14.37 5.14 85.63 0.44 14.81 16 7 C -0.54 -31.11 9.39 25.60 0.24 -30.87 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.38 5.46 84.65 0.46 0.85 16 10 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 11 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 15 C 0.50 19.53 6.24 87.66 0.55 20.08 16 16 O -0.59 -28.85 13.20 -3.03 -0.04 -28.89 16 17 C -0.14 -3.46 3.57 29.85 0.11 -3.35 16 18 C -0.11 -2.86 0.78 -51.48 -0.04 -2.90 16 19 C -0.13 -3.87 8.86 71.98 0.64 -3.23 16 20 C 0.05 1.37 7.58 72.27 0.55 1.92 16 21 O -0.40 -11.15 12.37 -148.98 -1.84 -13.00 16 22 C 0.05 1.00 8.36 72.27 0.60 1.61 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 27 H 0.09 1.23 6.95 -2.39 -0.02 1.21 16 28 H 0.03 0.87 5.95 -2.39 -0.01 0.86 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 31 H 0.10 2.28 6.07 -2.38 -0.01 2.27 16 32 H 0.02 0.89 7.98 -2.39 -0.02 0.87 16 33 H -0.01 -0.39 7.50 -2.39 -0.02 -0.41 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 35 H 0.12 2.31 6.89 -2.39 -0.02 2.29 16 36 H 0.13 2.61 4.03 -2.39 -0.01 2.60 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.78 5.92 -2.39 -0.01 1.76 16 39 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 40 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 41 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 42 H 0.11 1.44 8.10 -2.39 -0.02 1.42 16 43 H 0.11 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -74.50 336.67 4.66 -69.85 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.97 Total: 12.23 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.13 Total: -4.51 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.59 Total: -83.12 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.88 Total: -41.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.50 4.66 -69.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930901507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.690 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds