Wall clock time and date at job start Mon Mar 30 2020 06:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47316 * 2 1 4 4 C 1.53001 * 109.47252 * 119.99908 * 2 1 3 5 5 N 1.46504 * 109.47013 * 65.00067 * 4 2 1 6 6 C 1.46498 * 120.00046 * 267.95278 * 5 4 2 7 7 C 1.50703 * 109.46921 * 270.00008 * 6 5 4 8 8 H 1.07998 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99798 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00329 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47453 * 90.00234 * 11 9 7 13 13 H 1.48510 * 109.47031 * 210.00191 * 11 9 7 14 14 H 1.48498 * 109.47254 * 329.99815 * 11 9 7 15 15 C 1.34778 * 119.99828 * 87.95068 * 5 4 2 16 16 O 1.21281 * 119.99514 * 185.67446 * 15 5 4 17 17 C 1.50696 * 120.00054 * 5.67557 * 15 5 4 18 18 H 1.09001 * 110.67585 * 325.87468 * 17 15 5 19 19 O 1.44422 * 110.65070 * 202.90503 * 17 15 5 20 20 C 1.43743 * 106.99911 * 201.48307 * 19 17 15 21 21 C 1.54101 * 107.29663 * 26.48754 * 20 19 17 22 22 C 1.54814 * 104.18575 * 357.97242 * 21 20 19 23 23 H 1.09005 * 110.91086 * 97.34895 * 22 21 20 24 24 C 1.52999 * 110.90443 * 220.91888 * 22 21 20 25 25 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46863 * 299.99566 * 1 2 3 27 27 H 1.08991 * 109.47089 * 60.00066 * 1 2 3 28 28 H 1.08993 * 109.47329 * 239.99970 * 2 1 3 29 29 H 1.08995 * 109.47543 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46775 * 300.00650 * 3 2 1 31 31 H 1.09009 * 109.46899 * 60.00128 * 3 2 1 32 32 H 1.09000 * 109.47486 * 305.00385 * 4 2 1 33 33 H 1.09000 * 109.47404 * 184.99935 * 4 2 1 34 34 H 1.09001 * 109.46983 * 29.99767 * 6 5 4 35 35 H 1.09002 * 109.47236 * 149.99726 * 6 5 4 36 36 H 0.96998 * 120.00337 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.87762 * 267.06288 * 20 19 17 38 38 H 1.09001 * 110.00261 * 145.98268 * 20 19 17 39 39 H 1.08990 * 110.49038 * 239.29364 * 21 20 19 40 40 H 1.09006 * 110.48600 * 116.64317 * 21 20 19 41 41 H 1.09000 * 109.47407 * 61.08842 * 24 22 21 42 42 H 1.09003 * 109.47030 * 301.08142 * 24 22 21 43 43 H 1.09008 * 109.46490 * 181.08538 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1329 1.1906 6 6 0.3956 -2.5734 1.8008 7 6 0.6429 -2.9616 3.2358 8 1 1.6369 -2.8879 3.6515 9 6 -0.4000 -3.4107 4.0179 10 7 -1.6104 -3.5009 3.5116 11 14 -0.0936 -3.8912 5.7969 12 1 -0.2781 -2.7038 6.6692 13 1 -1.0534 -4.9521 6.1954 14 1 1.2941 -4.4000 5.9403 15 6 2.4523 -3.0262 0.5752 16 8 2.0852 -4.1737 0.4359 17 6 3.8027 -2.5993 0.0602 18 1 3.7707 -1.5697 -0.2963 19 8 4.2519 -3.4861 -0.9875 20 6 5.6810 -3.3533 -1.0663 21 6 6.1775 -2.9115 0.3240 22 6 4.8828 -2.7630 1.1597 23 1 4.6993 -3.6574 1.7551 24 6 4.9476 -1.5209 2.0507 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2952 34 1 -0.3304 -1.7611 1.7640 35 1 0.0076 -3.4325 1.2536 36 1 -2.3440 -3.8172 4.0617 37 1 5.9428 -2.6006 -1.8099 38 1 6.1301 -4.3099 -1.3335 39 1 6.7000 -1.9573 0.2570 40 1 6.8260 -3.6731 0.7573 41 1 5.0476 -0.6318 1.4280 42 1 5.8068 -1.5963 2.7172 43 1 4.0344 -1.4497 2.6417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163877458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:35 Heat of formation + Delta-G solvation = -93.698426 kcal Electronic energy + Delta-G solvation = -22474.797813 eV Core-core repulsion = 19326.719586 eV Total energy + Delta-G solvation = -3148.078227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.18110 -38.15423 -36.28640 -33.67447 -33.46656 -32.23225 -30.10689 -27.84303 -26.88792 -26.74929 -25.16489 -23.46908 -22.02683 -20.68396 -20.19033 -18.59309 -16.93454 -16.48730 -16.11976 -15.47788 -14.97152 -14.73764 -14.52142 -14.49565 -13.81081 -13.74807 -13.34125 -13.04659 -12.75152 -12.42990 -12.23392 -12.06824 -11.93036 -11.62089 -11.54325 -11.30489 -11.27308 -11.02882 -10.94837 -10.81728 -10.70467 -10.46625 -10.42932 -10.25104 -10.09437 -9.62450 -9.55439 -8.74394 -8.41540 -7.60028 -6.03164 -4.07880 3.25381 3.29594 3.36789 3.40035 3.64427 4.33597 4.44775 4.49759 4.79360 4.86412 5.08681 5.11681 5.17684 5.20855 5.23362 5.31071 5.42467 5.44455 5.60418 5.63009 5.71385 5.71869 5.83490 5.84814 5.89220 5.97027 6.10616 6.14990 6.17726 6.21027 6.27924 6.33554 6.57288 6.71120 6.87564 7.15838 7.48321 7.58518 7.93875 8.25398 8.43370 8.91348 9.11895 9.57023 11.04706 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.007131 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.624774 B = 3925.362715 C = 4767.245821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.100 3.900 5 N -0.590 5.590 6 C 0.243 3.757 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.515 3.485 16 O -0.525 6.525 17 C 0.060 3.940 18 H 0.085 0.915 19 O -0.351 6.351 20 C 0.045 3.955 21 C -0.150 4.150 22 C -0.111 4.111 23 H 0.092 0.908 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.344 9.473 -6.184 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.024 4.024 5 N -0.322 5.322 6 C 0.125 3.875 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.300 3.700 16 O -0.400 6.400 17 C -0.001 4.001 18 H 0.103 0.897 19 O -0.269 6.269 20 C -0.032 4.032 21 C -0.188 4.188 22 C -0.130 4.130 23 H 0.111 0.889 24 C -0.207 4.207 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.797 8.645 -6.336 16.693 hybrid contribution 0.260 -0.091 1.126 1.159 sum 13.057 8.555 -5.210 16.456 Atomic orbital electron populations 1.21895 0.94537 1.03060 1.00957 1.21625 0.97283 0.95831 0.98917 1.21779 1.00430 0.96014 1.01853 1.21905 0.99975 0.82430 0.98077 1.48102 1.23271 1.06220 1.54628 1.19400 0.79156 0.96435 0.92536 1.21453 0.94939 1.44232 0.95971 0.92507 1.24920 0.95007 0.95448 0.98657 1.69929 0.99961 1.46830 1.36523 0.86533 0.78150 0.78234 0.84721 1.20663 1.21102 1.19938 1.19807 0.85041 0.86056 0.79129 1.90677 1.74032 1.18931 1.56385 1.23264 0.94164 0.94346 0.88304 0.89737 1.88995 1.19763 1.63819 1.54363 1.23157 0.82150 1.01440 0.96476 1.23016 0.97878 1.02374 0.95509 1.22613 0.93151 1.00826 0.96453 0.88918 1.21946 1.03223 0.95961 0.99556 0.91337 0.92506 0.93594 0.91607 0.93019 0.92778 0.92425 0.89782 0.90680 0.94140 0.93935 0.92731 0.92511 0.89837 0.90457 0.90331 0.92201 0.91927 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.23 37.16 0.31 -1.97 16 2 C -0.12 -1.64 2.93 -90.62 -0.27 -1.91 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.10 1.61 3.91 -4.04 -0.02 1.59 16 5 N -0.59 -12.47 2.25 -175.05 -0.39 -12.86 16 6 C 0.24 6.31 4.27 -5.19 -0.02 6.29 16 7 C -0.53 -14.77 9.39 -34.44 -0.32 -15.10 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.51 11.36 6.94 -10.99 -0.08 11.28 16 16 O -0.52 -14.27 16.26 -12.15 -0.20 -14.46 16 17 C 0.06 1.02 2.63 -26.83 -0.07 0.95 16 18 H 0.09 1.23 5.94 -51.93 -0.31 0.92 16 19 O -0.35 -6.27 10.90 -52.94 -0.58 -6.85 16 20 C 0.04 0.55 7.70 37.73 0.29 0.85 16 21 C -0.15 -1.64 6.60 -25.20 -0.17 -1.80 16 22 C -0.11 -1.58 3.14 -88.61 -0.28 -1.86 16 23 H 0.09 1.55 8.05 -51.93 -0.42 1.14 16 24 C -0.15 -1.78 7.69 37.16 0.29 -1.49 16 25 H 0.07 1.27 6.05 -51.93 -0.31 0.96 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 33 H 0.08 1.02 3.01 -51.93 -0.16 0.86 16 34 H 0.04 1.04 6.21 -51.93 -0.32 0.72 16 35 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.04 6.75 -51.92 -0.35 0.69 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -33.49 335.43 -7.70 -41.19 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.21 Total: -0.37 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.09 Total: -2.71 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.34 Total: -38.61 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.77 Total: -21.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.49 -7.70 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163877458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.509 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds