Wall clock time and date at job start Mon Mar 30 2020 06:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47316 * 2 1 4 4 C 1.53001 * 109.47252 * 119.99908 * 2 1 3 5 5 N 1.46504 * 109.47013 * 65.00067 * 4 2 1 6 6 C 1.46498 * 120.00046 * 267.95278 * 5 4 2 7 7 C 1.50703 * 109.46921 * 270.00008 * 6 5 4 8 8 H 1.07998 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99798 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00329 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47453 * 90.00234 * 11 9 7 13 13 H 1.48510 * 109.47031 * 210.00191 * 11 9 7 14 14 H 1.48498 * 109.47254 * 329.99815 * 11 9 7 15 15 C 1.34778 * 119.99828 * 87.95068 * 5 4 2 16 16 O 1.21281 * 119.99514 * 185.67446 * 15 5 4 17 17 C 1.50696 * 120.00054 * 5.67557 * 15 5 4 18 18 H 1.09001 * 110.67585 * 325.87468 * 17 15 5 19 19 O 1.44422 * 110.65070 * 202.90503 * 17 15 5 20 20 C 1.43743 * 106.99911 * 201.48307 * 19 17 15 21 21 C 1.54101 * 107.29663 * 26.48754 * 20 19 17 22 22 C 1.54814 * 104.18575 * 357.97242 * 21 20 19 23 23 H 1.09005 * 110.91086 * 97.34895 * 22 21 20 24 24 C 1.52999 * 110.90443 * 220.91888 * 22 21 20 25 25 H 1.09002 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46863 * 299.99566 * 1 2 3 27 27 H 1.08991 * 109.47089 * 60.00066 * 1 2 3 28 28 H 1.08993 * 109.47329 * 239.99970 * 2 1 3 29 29 H 1.08995 * 109.47543 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46775 * 300.00650 * 3 2 1 31 31 H 1.09009 * 109.46899 * 60.00128 * 3 2 1 32 32 H 1.09000 * 109.47486 * 305.00385 * 4 2 1 33 33 H 1.09000 * 109.47404 * 184.99935 * 4 2 1 34 34 H 1.09001 * 109.46983 * 29.99767 * 6 5 4 35 35 H 1.09002 * 109.47236 * 149.99726 * 6 5 4 36 36 H 0.96998 * 120.00337 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.87762 * 267.06288 * 20 19 17 38 38 H 1.09001 * 110.00261 * 145.98268 * 20 19 17 39 39 H 1.08990 * 110.49038 * 239.29364 * 21 20 19 40 40 H 1.09006 * 110.48600 * 116.64317 * 21 20 19 41 41 H 1.09000 * 109.47407 * 61.08842 * 24 22 21 42 42 H 1.09003 * 109.47030 * 301.08142 * 24 22 21 43 43 H 1.09008 * 109.46490 * 181.08538 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1329 1.1906 6 6 0.3956 -2.5734 1.8008 7 6 0.6429 -2.9616 3.2358 8 1 1.6369 -2.8879 3.6515 9 6 -0.4000 -3.4107 4.0179 10 7 -1.6104 -3.5009 3.5116 11 14 -0.0936 -3.8912 5.7969 12 1 -0.2781 -2.7038 6.6692 13 1 -1.0534 -4.9521 6.1954 14 1 1.2941 -4.4000 5.9403 15 6 2.4523 -3.0262 0.5752 16 8 2.0852 -4.1737 0.4359 17 6 3.8027 -2.5993 0.0602 18 1 3.7707 -1.5697 -0.2963 19 8 4.2519 -3.4861 -0.9875 20 6 5.6810 -3.3533 -1.0663 21 6 6.1775 -2.9115 0.3240 22 6 4.8828 -2.7630 1.1597 23 1 4.6993 -3.6574 1.7551 24 6 4.9476 -1.5209 2.0507 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6054 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2952 34 1 -0.3304 -1.7611 1.7640 35 1 0.0076 -3.4325 1.2536 36 1 -2.3440 -3.8172 4.0617 37 1 5.9428 -2.6006 -1.8099 38 1 6.1301 -4.3099 -1.3335 39 1 6.7000 -1.9573 0.2570 40 1 6.8260 -3.6731 0.7573 41 1 5.0476 -0.6318 1.4280 42 1 5.8068 -1.5963 2.7172 43 1 4.0344 -1.4497 2.6417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163877458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:34 Heat of formation + Delta-G solvation = -115.276376 kcal Electronic energy + Delta-G solvation = -22475.733503 eV Core-core repulsion = 19326.719586 eV Total energy + Delta-G solvation = -3149.013917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59610 -39.58809 -37.83922 -35.39709 -34.76728 -34.03957 -31.34892 -29.56593 -28.11131 -27.94242 -26.68797 -25.05578 -23.48293 -21.80917 -21.39859 -20.13026 -18.68110 -18.35235 -17.64230 -16.72868 -16.47902 -16.30569 -16.07295 -15.74371 -15.24753 -14.92579 -14.63671 -14.36254 -14.16564 -13.97560 -13.69164 -13.48202 -13.17241 -13.03242 -12.94578 -12.69717 -12.57847 -12.47186 -12.42319 -12.18053 -12.11472 -11.90286 -11.80170 -11.61802 -11.56327 -11.37115 -10.82723 -10.63096 -10.43256 -9.41487 -8.22616 -6.37634 1.34521 1.38093 1.47854 1.63685 2.07333 2.38794 3.05351 3.09010 3.41745 3.57559 3.80163 3.93403 4.01901 4.02803 4.12734 4.22500 4.22885 4.44726 4.58341 4.63006 4.65809 4.76844 4.82213 4.86680 4.90947 4.95527 5.01163 5.04507 5.11413 5.11869 5.20919 5.22431 5.28885 5.32371 5.42546 5.49732 5.58652 5.78601 5.90421 6.06690 6.68479 6.74568 7.25905 7.42602 8.84512 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.007131 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.624774 B = 3925.362715 C = 4767.245821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.135 4.135 4 C 0.095 3.905 5 N -0.588 5.588 6 C 0.262 3.738 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.260 1.260 13 H -0.283 1.283 14 H -0.272 1.272 15 C 0.501 3.499 16 O -0.595 6.595 17 C 0.070 3.930 18 H 0.118 0.882 19 O -0.393 6.393 20 C 0.034 3.966 21 C -0.136 4.136 22 C -0.114 4.114 23 H 0.053 0.947 24 C -0.147 4.147 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.037 0.963 35 H -0.013 1.013 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.519 12.214 -5.788 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.193 4.193 4 C -0.027 4.027 5 N -0.319 5.319 6 C 0.141 3.859 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.185 1.185 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.289 3.711 16 O -0.475 6.475 17 C 0.009 3.991 18 H 0.135 0.865 19 O -0.312 6.312 20 C -0.042 4.042 21 C -0.173 4.173 22 C -0.133 4.133 23 H 0.072 0.928 24 C -0.204 4.204 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.005 0.995 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.004 11.452 -5.944 20.557 hybrid contribution -0.759 -0.974 0.933 1.548 sum 15.245 10.478 -5.011 19.165 Atomic orbital electron populations 1.21877 0.96156 1.00460 1.01951 1.21601 0.95902 0.98252 0.97401 1.21735 1.01992 0.92786 1.02774 1.22270 1.02045 0.79248 0.99117 1.48073 1.21580 1.08595 1.53634 1.18841 0.81414 0.94226 0.91448 1.21736 0.94973 1.44591 0.96892 0.92635 1.25865 0.94650 0.95142 1.03484 1.70063 1.00919 1.47479 1.38366 0.85430 0.77891 0.78482 0.79114 1.18484 1.20826 1.19724 1.20942 0.86878 0.85153 0.78166 1.90624 1.75863 1.21876 1.59174 1.23248 0.91148 0.95232 0.89442 0.86475 1.88960 1.23190 1.64594 1.54498 1.23515 0.79285 1.03097 0.98317 1.23018 0.96102 1.04756 0.93458 1.22642 0.94015 1.00581 0.96094 0.92809 1.21960 1.02929 0.95839 0.99679 0.95681 0.92730 0.91378 0.91852 0.90487 0.91434 0.92016 0.90417 0.87343 0.94555 0.99482 0.92444 0.89536 0.89191 0.86664 0.89229 0.88853 0.89652 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 8.23 71.98 0.59 -4.01 16 2 C -0.11 -2.97 2.93 -10.79 -0.03 -3.01 16 3 C -0.14 -2.36 9.19 71.98 0.66 -1.70 16 4 C 0.10 2.98 3.91 86.38 0.34 3.32 16 5 N -0.59 -26.02 2.25 -826.14 -1.86 -27.87 16 6 C 0.26 14.56 4.27 85.63 0.37 14.92 16 7 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.01 0.44 5.46 84.65 0.46 0.90 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 11 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 15 C 0.50 23.19 6.94 87.66 0.61 23.80 16 16 O -0.59 -34.96 16.26 13.90 0.23 -34.73 16 17 C 0.07 2.30 2.63 30.53 0.08 2.38 16 18 H 0.12 3.04 5.94 -2.39 -0.01 3.02 16 19 O -0.39 -13.88 10.90 -132.05 -1.44 -15.32 16 20 C 0.03 0.74 7.70 72.35 0.56 1.30 16 21 C -0.14 -2.44 6.60 31.59 0.21 -2.23 16 22 C -0.11 -3.05 3.14 -9.49 -0.03 -3.07 16 23 H 0.05 1.84 8.05 -2.38 -0.02 1.82 16 24 C -0.15 -2.98 7.69 71.98 0.55 -2.42 16 25 H 0.02 0.97 6.05 -2.39 -0.01 0.96 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.74 7.64 -2.39 -0.02 1.72 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 2.55 8.06 -2.39 -0.02 2.53 16 33 H 0.11 2.65 3.01 -2.39 -0.01 2.65 16 34 H 0.04 2.02 6.21 -2.39 -0.01 2.01 16 35 H -0.01 -0.86 7.35 -2.39 -0.02 -0.87 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 1.26 7.86 -2.39 -0.02 1.24 16 40 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.09 1.27 7.45 -2.39 -0.02 1.25 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.24 6.75 -2.38 -0.02 1.23 16 Total: -1.00 -80.85 335.43 4.82 -76.02 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.98 Total: 12.86 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 4.61 Total: -1.40 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.57 Total: -84.84 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -1.21 Total: -50.05 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -80.85 4.82 -76.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163877458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.253 kcal (2) G-P(sol) polarization free energy of solvation -80.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds