Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.57032 * 2 1 4 4 C 1.53092 * 109.45381 * 120.21373 * 2 1 3 5 5 O 1.42904 * 109.49280 * 62.38415 * 4 2 1 6 6 C 1.42903 * 114.09714 * 61.10677 * 5 4 2 7 7 C 1.53090 * 109.41692 * 298.85126 * 6 5 4 8 8 C 1.53177 * 109.16861 * 57.60321 * 7 6 5 9 9 H 1.09004 * 109.53935 * 62.97236 * 8 7 6 10 10 C 1.50689 * 109.54650 * 183.15273 * 8 7 6 11 11 O 1.21283 * 120.00150 * 119.82523 * 10 8 7 12 12 N 1.34779 * 120.00546 * 299.82590 * 10 8 7 13 13 C 1.46492 * 120.00559 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47363 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 13 12 16 16 C 1.52999 * 109.46623 * 299.99764 * 14 13 12 17 17 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99777 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47204 * 119.99883 * 21 19 17 24 24 H 1.48496 * 109.47191 * 240.00215 * 21 19 17 25 25 H 1.09002 * 109.47058 * 180.15150 * 1 2 3 26 26 H 1.08999 * 109.47094 * 300.15546 * 1 2 3 27 27 H 1.09008 * 109.47059 * 60.15277 * 1 2 3 28 28 H 1.09001 * 109.48325 * 302.35425 * 4 2 1 29 29 H 1.08999 * 109.41730 * 182.37426 * 4 2 1 30 30 H 1.09001 * 109.48403 * 178.85894 * 6 5 4 31 31 H 1.08998 * 109.47538 * 58.83122 * 6 5 4 32 32 H 1.09000 * 109.51939 * 297.69785 * 7 6 5 33 33 H 1.09001 * 109.57320 * 177.54683 * 7 6 5 34 34 H 0.97009 * 119.99396 * 359.97438 * 12 10 8 35 35 H 1.09000 * 109.47152 * 59.99958 * 13 12 10 36 36 H 1.09001 * 109.47164 * 300.00062 * 13 12 10 37 37 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 38 38 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 39 39 H 1.09004 * 109.47261 * 300.00303 * 15 14 13 40 40 H 1.09002 * 109.46716 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.47486 * 299.99829 * 16 14 13 42 42 H 1.09001 * 109.47362 * 60.00551 * 16 14 13 43 43 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0399 -0.7264 1.2474 5 8 1.6099 -2.0888 1.2150 6 6 2.0988 -2.8284 0.0942 7 6 1.5895 -2.1878 -1.1996 8 6 2.0418 -0.7252 -1.2485 9 1 3.1306 -0.6810 -1.2751 10 6 1.4802 -0.0647 -2.4810 11 8 0.7453 0.8942 -2.3737 12 7 1.7944 -0.5395 -3.7026 13 6 1.2488 0.1029 -4.9008 14 6 1.7569 -0.6259 -6.1465 15 6 1.3066 -2.0874 -6.1015 16 6 3.2851 -0.5640 -6.1857 17 6 1.1962 0.0354 -7.3791 18 1 0.5424 0.8897 -7.2836 19 6 1.5178 -0.4503 -8.6288 20 7 2.3142 -1.4903 -8.7451 21 14 0.8221 0.3689 -10.1567 22 1 -0.0408 1.5096 -9.7574 23 1 1.9366 0.8637 -11.0041 24 1 0.0168 -0.6156 -10.9231 25 1 -0.3633 -1.0277 0.0027 26 1 -0.3633 0.5162 0.8886 27 1 -0.3633 0.5115 -0.8914 28 1 1.6425 -0.2409 2.1388 29 1 3.1291 -0.6894 1.2685 30 1 1.7438 -3.8573 0.1548 31 1 3.1887 -2.8189 0.1000 32 1 0.5007 -2.2334 -1.2245 33 1 1.9962 -2.7238 -2.0571 34 1 2.3824 -1.3062 -3.7884 35 1 1.5693 1.1443 -4.9326 36 1 0.1600 0.0585 -4.8731 37 1 1.6690 -2.6067 -6.9887 38 1 0.2178 -2.1314 -6.0736 39 1 1.7126 -2.5654 -5.2100 40 1 3.6471 -1.0836 -7.0729 41 1 3.6059 0.4773 -6.2177 42 1 3.6911 -1.0420 -5.2942 43 1 2.5407 -1.8318 -9.6243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315904608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = -102.177580 kcal Electronic energy + Delta-G solvation = -21885.942616 eV Core-core repulsion = 18737.496705 eV Total energy + Delta-G solvation = -3148.445911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46876 -38.54136 -36.44098 -34.09331 -33.45418 -31.91901 -30.74399 -27.34640 -26.15294 -25.76051 -25.41897 -24.37664 -23.17667 -20.57779 -19.14916 -18.70625 -17.19569 -16.31243 -16.07390 -15.75746 -15.29298 -14.96504 -14.82264 -14.45030 -14.16701 -13.64550 -13.34172 -12.92719 -12.86745 -12.58853 -12.19378 -11.99546 -11.63205 -11.46076 -11.36947 -11.21985 -11.03234 -10.84860 -10.68071 -10.58526 -10.40739 -10.36260 -10.22077 -9.87722 -9.66476 -9.42192 -9.02475 -8.79246 -8.46248 -8.30985 -6.04598 -4.14566 3.00992 3.25519 3.34256 3.38693 3.65702 3.81329 4.38324 4.52227 4.69460 4.78521 4.88326 5.04204 5.19761 5.22391 5.33557 5.49937 5.50705 5.52413 5.66097 5.73504 5.81545 6.03467 6.13763 6.22816 6.30372 6.33460 6.47931 6.60108 6.78074 6.78694 6.90656 6.98672 7.03963 7.07686 7.32819 7.52539 7.67131 7.97916 8.03810 8.13405 8.36133 8.70561 8.86580 9.51497 10.96839 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039312 B = 0.004128 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.078620 B = 6781.250384 C = 7128.578141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 H 0.083 0.917 4 C 0.065 3.935 5 O -0.381 6.381 6 C 0.063 3.937 7 C -0.149 4.149 8 C -0.107 4.107 9 H 0.093 0.907 10 C 0.510 3.490 11 O -0.545 6.545 12 N -0.715 5.715 13 C 0.132 3.868 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.005 0.995 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.005 0.995 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -2.718 15.603 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.123 4.123 3 H 0.101 0.899 4 C -0.012 4.012 5 O -0.299 6.299 6 C -0.013 4.013 7 C -0.187 4.187 8 C -0.128 4.128 9 H 0.111 0.889 10 C 0.295 3.705 11 O -0.424 6.424 12 N -0.365 5.365 13 C 0.009 3.991 14 C 0.054 3.946 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.232 0.768 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.024 0.976 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.607 -2.222 15.638 15.876 hybrid contribution 0.211 0.176 -1.233 1.263 sum 1.818 -2.046 14.404 14.662 Atomic orbital electron populations 1.22097 0.93787 1.02097 1.03507 1.21506 0.98235 0.99566 0.92949 0.89857 1.22668 0.98101 0.82301 0.98113 1.87920 1.74235 1.22510 1.45250 1.22563 0.97965 0.95614 0.85207 1.22225 1.03210 0.94162 0.99133 1.21391 1.01319 0.96054 0.94077 0.88936 1.20388 0.81296 0.84089 0.84693 1.90569 1.37254 1.28038 1.86554 1.46342 1.50006 1.34050 1.06148 1.21706 0.97490 0.96421 0.83461 1.18363 0.92901 0.92614 0.90676 1.21821 0.98533 0.98464 0.99936 1.21827 0.97669 0.99249 1.00057 1.21023 1.29077 1.14330 0.89946 0.92415 1.24879 0.94885 0.94883 0.98865 1.69809 1.35587 1.23795 1.23267 0.86521 0.78896 0.79509 0.83003 1.19759 1.21051 1.21049 0.92847 0.93515 0.89096 0.88758 0.93344 0.88630 0.93064 0.90060 0.90229 0.76821 0.92801 0.92782 0.89616 0.95452 0.97565 0.89589 0.95469 0.97582 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.43 37.16 0.31 -1.80 16 2 C -0.10 -1.24 2.45 -90.48 -0.22 -1.47 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.06 0.65 6.25 37.20 0.23 0.89 16 5 O -0.38 -4.35 10.19 -35.23 -0.36 -4.71 16 6 C 0.06 0.61 6.84 37.20 0.25 0.86 16 7 C -0.15 -1.64 4.93 -26.59 -0.13 -1.77 16 8 C -0.11 -1.33 2.40 -91.59 -0.22 -1.55 16 9 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.51 8.45 6.86 -10.99 -0.08 8.38 16 11 O -0.55 -10.81 13.47 5.55 0.07 -10.73 16 12 N -0.72 -12.33 4.86 -60.30 -0.29 -12.62 16 13 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 14 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 15 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.51 -13.13 8.01 -34.44 -0.28 -13.40 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -23.38 9.35 55.43 0.52 -22.86 16 21 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H 0.05 0.71 6.15 -51.93 -0.32 0.39 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.48 5.27 -51.92 -0.27 1.21 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.00 6.64 -51.93 -0.34 0.66 16 33 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 34 H 0.40 6.18 5.66 -40.82 -0.23 5.95 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 43 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -28.06 324.09 -7.01 -35.07 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.10 Total: 4.87 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 0.29 Total: -9.48 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.23 Total: -35.48 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.28 Total: -15.44 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.06 -7.01 -35.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315904608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.103 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds