Wall clock time and date at job start Mon Mar 30 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.57032 * 2 1 4 4 C 1.53092 * 109.45381 * 120.21373 * 2 1 3 5 5 O 1.42904 * 109.49280 * 62.38415 * 4 2 1 6 6 C 1.42903 * 114.09714 * 61.10677 * 5 4 2 7 7 C 1.53090 * 109.41692 * 298.85126 * 6 5 4 8 8 C 1.53177 * 109.16861 * 57.60321 * 7 6 5 9 9 H 1.09004 * 109.53935 * 62.97236 * 8 7 6 10 10 C 1.50689 * 109.54650 * 183.15273 * 8 7 6 11 11 O 1.21283 * 120.00150 * 119.82523 * 10 8 7 12 12 N 1.34779 * 120.00546 * 299.82590 * 10 8 7 13 13 C 1.46492 * 120.00559 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47363 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 13 12 16 16 C 1.52999 * 109.46623 * 299.99764 * 14 13 12 17 17 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99777 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47204 * 119.99883 * 21 19 17 24 24 H 1.48496 * 109.47191 * 240.00215 * 21 19 17 25 25 H 1.09002 * 109.47058 * 180.15150 * 1 2 3 26 26 H 1.08999 * 109.47094 * 300.15546 * 1 2 3 27 27 H 1.09008 * 109.47059 * 60.15277 * 1 2 3 28 28 H 1.09001 * 109.48325 * 302.35425 * 4 2 1 29 29 H 1.08999 * 109.41730 * 182.37426 * 4 2 1 30 30 H 1.09001 * 109.48403 * 178.85894 * 6 5 4 31 31 H 1.08998 * 109.47538 * 58.83122 * 6 5 4 32 32 H 1.09000 * 109.51939 * 297.69785 * 7 6 5 33 33 H 1.09001 * 109.57320 * 177.54683 * 7 6 5 34 34 H 0.97009 * 119.99396 * 359.97438 * 12 10 8 35 35 H 1.09000 * 109.47152 * 59.99958 * 13 12 10 36 36 H 1.09001 * 109.47164 * 300.00062 * 13 12 10 37 37 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 38 38 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 39 39 H 1.09004 * 109.47261 * 300.00303 * 15 14 13 40 40 H 1.09002 * 109.46716 * 179.97438 * 16 14 13 41 41 H 1.09000 * 109.47486 * 299.99829 * 16 14 13 42 42 H 1.09001 * 109.47362 * 60.00551 * 16 14 13 43 43 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0399 -0.7264 1.2474 5 8 1.6099 -2.0888 1.2150 6 6 2.0988 -2.8284 0.0942 7 6 1.5895 -2.1878 -1.1996 8 6 2.0418 -0.7252 -1.2485 9 1 3.1306 -0.6810 -1.2751 10 6 1.4802 -0.0647 -2.4810 11 8 0.7453 0.8942 -2.3737 12 7 1.7944 -0.5395 -3.7026 13 6 1.2488 0.1029 -4.9008 14 6 1.7569 -0.6259 -6.1465 15 6 1.3066 -2.0874 -6.1015 16 6 3.2851 -0.5640 -6.1857 17 6 1.1962 0.0354 -7.3791 18 1 0.5424 0.8897 -7.2836 19 6 1.5178 -0.4503 -8.6288 20 7 2.3142 -1.4903 -8.7451 21 14 0.8221 0.3689 -10.1567 22 1 -0.0408 1.5096 -9.7574 23 1 1.9366 0.8637 -11.0041 24 1 0.0168 -0.6156 -10.9231 25 1 -0.3633 -1.0277 0.0027 26 1 -0.3633 0.5162 0.8886 27 1 -0.3633 0.5115 -0.8914 28 1 1.6425 -0.2409 2.1388 29 1 3.1291 -0.6894 1.2685 30 1 1.7438 -3.8573 0.1548 31 1 3.1887 -2.8189 0.1000 32 1 0.5007 -2.2334 -1.2245 33 1 1.9962 -2.7238 -2.0571 34 1 2.3824 -1.3062 -3.7884 35 1 1.5693 1.1443 -4.9326 36 1 0.1600 0.0585 -4.8731 37 1 1.6690 -2.6067 -6.9887 38 1 0.2178 -2.1314 -6.0736 39 1 1.7126 -2.5654 -5.2100 40 1 3.6471 -1.0836 -7.0729 41 1 3.6059 0.4773 -6.2177 42 1 3.6911 -1.0420 -5.2942 43 1 2.5407 -1.8318 -9.6243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315904608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:15 Heat of formation + Delta-G solvation = -119.187200 kcal Electronic energy + Delta-G solvation = -21886.680208 eV Core-core repulsion = 18737.496705 eV Total energy + Delta-G solvation = -3149.183503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58854 -39.70367 -38.11754 -35.09998 -35.08304 -33.12406 -32.28491 -28.47938 -27.56974 -27.46771 -27.09134 -25.82270 -24.01778 -21.89835 -20.64271 -20.03360 -18.44332 -17.76429 -17.25804 -16.93145 -16.68625 -16.32653 -16.13086 -15.73017 -15.39013 -14.82757 -14.69763 -14.55680 -14.32058 -14.01337 -13.53432 -13.21376 -13.11950 -12.97298 -12.70857 -12.58330 -12.47709 -12.31253 -12.25843 -12.14281 -11.97589 -11.51095 -11.48188 -11.29519 -11.22300 -10.83517 -10.70314 -10.40863 -10.21469 -9.85753 -8.03409 -6.18916 1.40184 1.44664 1.53724 1.69963 2.31882 2.49538 3.03806 3.20288 3.57167 3.76430 3.79959 4.01197 4.21738 4.28171 4.42082 4.49977 4.54540 4.61051 4.66179 4.71641 4.74370 4.80451 4.85372 4.95000 4.98698 5.05039 5.09726 5.15285 5.18762 5.21965 5.31431 5.36694 5.50148 5.66592 5.66663 5.68689 6.14803 6.21229 6.32048 6.43020 6.70031 6.85394 7.36936 7.48947 8.95522 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039312 B = 0.004128 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.078620 B = 6781.250384 C = 7128.578141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.069 3.931 5 O -0.397 6.397 6 C 0.064 3.936 7 C -0.147 4.147 8 C -0.099 4.099 9 H 0.119 0.881 10 C 0.507 3.493 11 O -0.581 6.581 12 N -0.710 5.710 13 C 0.149 3.851 14 C 0.050 3.950 15 C -0.119 4.119 16 C -0.120 4.120 17 C -0.528 4.528 18 H 0.042 0.958 19 C 0.029 3.971 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.408 0.592 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.038 0.962 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -3.730 17.073 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.007 4.007 5 O -0.316 6.316 6 C -0.013 4.013 7 C -0.185 4.185 8 C -0.121 4.121 9 H 0.137 0.863 10 C 0.294 3.706 11 O -0.461 6.461 12 N -0.361 5.361 13 C 0.025 3.975 14 C 0.050 3.950 15 C -0.177 4.177 16 C -0.178 4.178 17 C -0.567 4.567 18 H 0.060 0.940 19 C -0.170 4.170 20 N -0.537 5.537 21 Si 0.771 3.229 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.057 0.943 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.872 -3.253 17.121 17.662 hybrid contribution -0.216 0.514 -1.674 1.764 sum 2.656 -2.739 15.447 15.911 Atomic orbital electron populations 1.22000 0.95243 1.01510 1.02335 1.21537 0.97006 0.99774 0.94014 0.90321 1.22710 0.99321 0.81587 0.97123 1.87912 1.74801 1.22997 1.45866 1.22695 0.99170 0.95829 0.83593 1.22236 1.02173 0.93218 1.00833 1.21434 1.02528 0.96534 0.91555 0.86303 1.21210 0.80403 0.83512 0.85433 1.90574 1.38725 1.29772 1.87076 1.46165 1.50227 1.34314 1.05396 1.21220 0.96278 0.95542 0.84462 1.18364 0.93372 0.92974 0.90316 1.21656 0.97857 0.97836 1.00356 1.21662 0.96984 0.98633 1.00480 1.21297 1.29328 1.14345 0.91740 0.93978 1.25428 0.95268 0.95450 1.00900 1.69905 1.35877 1.24215 1.23681 0.85730 0.78281 0.78589 0.80344 1.20153 1.20659 1.20702 0.93093 0.92463 0.92388 0.87673 0.91201 0.87260 0.90963 0.91928 0.89023 0.75523 0.94593 0.94735 0.91926 0.96482 0.94277 0.91908 0.96403 0.94310 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.43 71.98 0.61 -3.44 16 2 C -0.10 -2.31 2.45 -10.70 -0.03 -2.33 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.07 1.17 6.25 72.01 0.45 1.62 16 5 O -0.40 -7.81 10.19 -148.98 -1.52 -9.33 16 6 C 0.06 0.99 6.84 72.01 0.49 1.48 16 7 C -0.15 -2.83 4.93 30.68 0.15 -2.68 16 8 C -0.10 -2.23 2.40 -11.42 -0.03 -2.26 16 9 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 10 C 0.51 16.35 6.86 87.65 0.60 16.95 16 11 O -0.58 -23.32 13.47 -3.04 -0.04 -23.36 16 12 N -0.71 -23.62 4.86 -463.07 -2.25 -25.87 16 13 C 0.15 6.29 4.50 86.38 0.39 6.68 16 14 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 15 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 16 C -0.12 -5.22 8.08 71.98 0.58 -4.63 16 17 C -0.53 -27.91 8.01 25.60 0.21 -27.70 16 18 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 19 C 0.03 1.54 5.15 84.66 0.44 1.97 16 20 N -0.90 -47.42 9.35 21.45 0.20 -47.22 16 21 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 H 0.05 1.33 6.15 -2.39 -0.01 1.32 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.93 5.27 -2.38 -0.01 1.92 16 28 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.45 6.64 -2.39 -0.02 1.44 16 33 H 0.09 1.55 7.68 -2.39 -0.02 1.53 16 34 H 0.41 11.63 5.66 -92.70 -0.52 11.11 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 40 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 43 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -61.20 324.09 3.30 -57.90 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.47 Total: 20.03 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.41 Total: -16.68 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -2.05 Total: -73.09 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.56 Total: -32.69 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -61.20 3.30 -57.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315904608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.287 kcal (2) G-P(sol) polarization free energy of solvation -61.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds