Wall clock time and date at job start Mon Mar 30 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.52999 * 109.47451 * 184.99880 * 3 2 1 6 6 O 1.42897 * 109.47388 * 305.00475 * 5 3 2 7 7 C 1.42898 * 113.99961 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.46954 * 179.97438 * 7 6 5 9 9 C 1.52994 * 117.49833 * 243.74169 * 8 7 6 10 10 C 1.53003 * 117.50024 * 175.08098 * 8 7 6 11 11 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 12 12 C 1.34773 * 120.00316 * 275.00099 * 11 3 2 13 13 O 1.21283 * 120.00233 * 0.02562 * 12 11 3 14 14 C 1.50697 * 120.00012 * 179.97438 * 12 11 3 15 15 H 1.08995 * 109.47634 * 300.00249 * 14 12 11 16 16 C 1.53005 * 109.47227 * 60.00516 * 14 12 11 17 17 C 1.50700 * 109.47232 * 180.02562 * 14 12 11 18 18 H 1.07995 * 119.99955 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00174 * 180.02562 * 17 14 12 20 20 N 1.31515 * 120.00167 * 179.97438 * 19 17 14 21 21 Si 1.86794 * 120.00016 * 0.02562 * 19 17 14 22 22 H 1.48499 * 109.47462 * 89.99877 * 21 19 17 23 23 H 1.48508 * 109.47329 * 210.00154 * 21 19 17 24 24 H 1.48503 * 109.47067 * 329.99581 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.08997 * 109.46928 * 65.00743 * 5 3 2 31 31 H 1.08999 * 109.47047 * 184.99963 * 5 3 2 32 32 H 1.09005 * 109.46949 * 299.99397 * 7 6 5 33 33 H 1.09001 * 109.47596 * 59.99616 * 7 6 5 34 34 H 1.09005 * 115.54770 * 29.41487 * 8 7 6 35 35 H 1.09000 * 117.50326 * 0.02562 * 9 8 7 36 36 H 1.09004 * 117.49834 * 145.02097 * 9 8 7 37 37 H 1.08992 * 117.49885 * 214.98138 * 10 8 7 38 38 H 1.09003 * 117.49343 * 359.97438 * 10 8 7 39 39 H 0.97003 * 119.99976 * 95.00125 * 11 3 2 40 40 H 1.09000 * 109.46536 * 299.99973 * 16 14 12 41 41 H 1.09002 * 109.47367 * 59.99323 * 16 14 12 42 42 H 1.09000 * 109.47299 * 179.97438 * 16 14 12 43 43 H 0.96996 * 120.00352 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1294 0.6404 0.9120 7 6 5.5566 0.5752 0.8855 8 6 6.0483 -0.3066 2.0351 9 6 6.9012 0.3559 3.1187 10 6 7.5486 -0.5971 2.1108 11 7 1.6524 2.0974 1.2518 12 6 0.4351 2.6643 1.3670 13 8 -0.3397 2.6319 0.4345 14 6 0.0363 3.3375 2.6549 15 1 0.0673 2.6129 3.4685 16 6 1.0067 4.4820 2.9541 17 6 -1.3616 3.8850 2.5237 18 1 -1.9068 3.7579 1.6001 19 6 -1.9445 4.5483 3.5825 20 7 -3.1642 5.0266 3.4678 21 14 -1.0013 4.7690 5.1797 22 1 -0.2329 6.0387 5.1295 23 1 -1.9559 4.8126 6.3165 24 1 -0.0651 3.6308 5.3630 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8499 1.0378 -1.0960 31 1 3.9355 2.4655 -0.0366 32 1 5.8833 0.1508 -0.0639 33 1 5.9683 1.5784 0.9959 34 1 5.3662 -1.0982 2.3453 35 1 7.1117 1.4202 3.0130 36 1 6.7805 0.0000 4.1419 37 1 7.8535 -1.5794 2.4712 38 1 8.1852 -0.1602 1.3414 39 1 2.2719 2.1231 1.9979 40 1 2.0176 4.0856 3.0492 41 1 0.9757 5.2067 2.1404 42 1 0.7180 4.9692 3.8854 43 1 -3.5744 5.4929 4.2128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597924846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:44 Heat of formation + Delta-G solvation = -66.774527 kcal Electronic energy + Delta-G solvation = -21282.725959 eV Core-core repulsion = 18135.815240 eV Total energy + Delta-G solvation = -3146.910719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49419 -38.47653 -36.95052 -34.98092 -33.74161 -31.94204 -30.78348 -29.10033 -26.74628 -25.07869 -23.56580 -22.77663 -22.69338 -20.95717 -20.31786 -19.39709 -17.12327 -16.69578 -16.28644 -16.04655 -15.63047 -15.15537 -14.69500 -14.57056 -14.39993 -13.72478 -13.38204 -13.09665 -12.79973 -12.45277 -12.36586 -12.23093 -12.04349 -11.85225 -11.56841 -11.29960 -11.05129 -10.95367 -10.85499 -10.67764 -10.54249 -10.49594 -10.37373 -10.20619 -9.67955 -9.57516 -9.03934 -8.59928 -8.53282 -8.34703 -6.00487 -4.00067 3.23612 3.26844 3.35514 3.39899 3.59586 3.70070 3.88992 4.42432 4.49668 4.57861 4.72306 4.86759 5.02199 5.05378 5.18444 5.28489 5.29466 5.32178 5.36444 5.48079 5.57297 5.58398 5.72430 5.78480 5.90013 5.91192 6.07021 6.17867 6.22879 6.32281 6.39516 6.50396 6.58700 6.79765 6.90752 7.00246 7.15319 7.22607 7.61558 8.25729 8.61971 9.17322 9.23899 9.59372 11.12568 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.004747 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.708923 B = 5896.879792 C = 6961.268689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.149 3.851 4 H 0.096 0.904 5 C 0.056 3.944 6 O -0.378 6.378 7 C 0.093 3.907 8 C -0.151 4.151 9 C -0.177 4.177 10 C -0.176 4.176 11 N -0.738 5.738 12 C 0.528 3.472 13 O -0.528 6.528 14 C -0.006 4.006 15 H 0.051 0.949 16 C -0.143 4.143 17 C -0.502 4.502 18 H 0.094 0.906 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.267 1.267 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.398 0.602 40 H 0.032 0.968 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.343 -10.065 -3.907 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.044 3.956 4 H 0.114 0.886 5 C -0.021 4.021 6 O -0.297 6.297 7 C 0.016 3.984 8 C -0.170 4.170 9 C -0.214 4.214 10 C -0.213 4.213 11 N -0.393 5.393 12 C 0.317 3.683 13 O -0.402 6.402 14 C -0.028 4.028 15 H 0.068 0.932 16 C -0.201 4.201 17 C -0.541 4.541 18 H 0.112 0.888 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.714 3.286 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.193 1.193 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.232 0.768 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.486 -10.072 -4.378 23.244 hybrid contribution 0.982 0.370 1.136 1.547 sum 21.468 -9.702 -3.241 23.780 Atomic orbital electron populations 1.21836 0.94717 1.00085 1.03812 1.21824 0.96942 0.95807 1.01818 1.20973 0.90754 0.94262 0.89620 0.88611 1.22862 0.93899 0.94634 0.90748 1.87913 1.19124 1.70649 1.52031 1.21974 0.81706 0.97894 0.96791 1.22138 0.93645 1.02384 0.98797 1.23081 1.03871 0.98753 0.95673 1.22975 0.94527 1.01165 1.02658 1.46240 1.18003 1.59311 1.15712 1.21165 0.79743 0.76524 0.90903 1.90581 1.50766 1.58041 1.40858 1.19309 0.97618 0.94462 0.91394 0.93179 1.22102 0.96825 0.99816 1.01350 1.20957 0.95933 1.34882 1.02292 0.88839 1.24980 0.94846 0.95247 0.98117 1.69885 1.13824 1.37961 1.31929 0.86923 0.79211 0.78762 0.83693 1.20614 1.22394 1.19250 0.91522 0.94180 0.92425 0.91358 0.92286 0.92276 0.92672 0.93088 0.93283 0.86794 0.88648 0.88568 0.88487 0.88786 0.76800 0.94870 0.92482 0.93428 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.51 37.16 0.32 -2.15 16 2 C -0.13 -1.76 5.33 -26.73 -0.14 -1.90 16 3 C 0.15 2.13 2.66 -67.93 -0.18 1.94 16 4 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 5 C 0.06 0.61 5.68 37.16 0.21 0.82 16 6 O -0.38 -4.33 9.29 -35.23 -0.33 -4.65 16 7 C 0.09 0.84 6.22 37.16 0.23 1.07 16 8 C -0.15 -1.30 6.05 -90.62 -0.55 -1.85 16 9 C -0.18 -1.37 10.18 -26.70 -0.27 -1.64 16 10 C -0.18 -1.21 10.26 -26.69 -0.27 -1.48 16 11 N -0.74 -12.32 4.90 -53.81 -0.26 -12.59 16 12 C 0.53 11.45 5.72 -10.99 -0.06 11.39 16 13 O -0.53 -13.13 12.60 5.56 0.07 -13.06 16 14 C -0.01 -0.15 2.23 -92.92 -0.21 -0.35 16 15 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 16 C -0.14 -3.00 8.57 37.16 0.32 -2.68 16 17 C -0.50 -14.63 8.96 -34.44 -0.31 -14.94 16 18 H 0.09 3.09 7.00 -52.49 -0.37 2.72 16 19 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 20 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 21 Si 0.88 21.68 24.37 -169.99 -4.14 17.54 16 22 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 23 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 25 H 0.07 1.34 5.64 -51.93 -0.29 1.05 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 28 H 0.07 0.98 7.73 -51.93 -0.40 0.58 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 6.01 7.80 -40.82 -0.32 5.70 16 40 H 0.03 0.56 7.56 -51.93 -0.39 0.16 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -32.62 338.70 -7.15 -39.78 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.35 Total: 5.00 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.02 Total: -9.85 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.51 Total: -39.85 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.26 Total: -17.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.62 -7.15 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597924846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.998 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds