Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99932 * 2 1 4 4 C 1.50694 * 109.47066 * 293.95260 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.46907 * 111.00071 * 123.95245 * 2 1 3 13 13 H 1.08999 * 109.54478 * 295.86831 * 12 2 1 14 14 C 1.53174 * 109.54663 * 175.59739 * 12 2 1 15 15 C 1.53091 * 109.19245 * 183.13660 * 14 12 2 16 16 O 1.42917 * 109.39883 * 57.63790 * 15 14 12 17 17 C 1.42830 * 114.08784 * 298.93656 * 16 15 14 18 18 C 1.53099 * 109.55111 * 181.23603 * 17 16 15 19 19 C 1.53115 * 109.15217 * 63.02151 * 18 17 16 20 20 O 1.42891 * 109.41087 * 57.51047 * 19 18 17 21 21 C 1.42911 * 114.13411 * 298.83789 * 20 19 18 22 22 C 1.53103 * 109.39818 * 61.17341 * 21 20 19 23 23 C 1.53010 * 109.56706 * 61.05820 * 17 16 15 24 24 H 1.09004 * 109.46699 * 60.00180 * 1 2 3 25 25 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47502 * 300.00034 * 1 2 3 27 27 H 1.09007 * 109.47052 * 173.94945 * 3 2 1 28 28 H 1.09003 * 109.46808 * 53.95638 * 3 2 1 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.51538 * 303.05030 * 14 12 2 31 31 H 1.09000 * 109.52158 * 63.22087 * 14 12 2 32 32 H 1.09003 * 109.48066 * 297.66640 * 15 14 12 33 33 H 1.08997 * 109.50029 * 177.62696 * 15 14 12 34 34 H 1.08993 * 109.52792 * 182.92635 * 18 17 16 35 35 H 1.09003 * 109.52256 * 303.12263 * 18 17 16 36 36 H 1.09003 * 109.48314 * 297.52700 * 19 18 17 37 37 H 1.09007 * 109.48803 * 177.49521 * 19 18 17 38 38 H 1.09004 * 109.48343 * 301.19808 * 21 20 19 39 39 H 1.09003 * 109.49719 * 181.16225 * 21 20 19 40 40 H 1.08994 * 109.52932 * 182.56773 * 22 21 20 41 41 H 1.09003 * 109.52410 * 62.36918 * 22 21 20 42 42 H 1.09001 * 109.52317 * 182.59647 * 23 17 16 43 43 H 1.08996 * 109.57987 * 62.42772 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7128 4.0016 -0.6153 8 14 1.5839 4.1864 -3.1387 9 1 2.6608 3.9494 -4.1333 10 1 0.3059 3.6295 -3.6505 11 1 1.4321 5.6462 -2.9119 12 6 1.9954 -0.7660 1.1376 13 1 1.7077 -0.2791 2.0695 14 6 3.5227 -0.8370 1.0448 15 6 4.0568 -1.7020 2.1894 16 8 3.4651 -3.0010 2.1188 17 6 2.0424 -3.0013 2.2455 18 6 1.5231 -4.4403 2.1864 19 6 2.0812 -5.2250 3.3768 20 8 1.7029 -4.5765 4.5926 21 6 2.2019 -3.2438 4.7238 22 6 1.6482 -2.3794 3.5879 23 6 1.4263 -2.1879 1.1053 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.0797 1.3444 0.1083 28 1 1.5610 1.9273 0.8310 29 1 2.9880 4.9175 -0.7776 30 1 3.8093 -1.2786 0.0903 31 1 3.9394 0.1672 1.1222 32 1 3.8042 -1.2390 3.1434 33 1 5.1398 -1.7907 2.1038 34 1 0.4340 -4.4366 2.2309 35 1 1.8491 -4.9074 1.2571 36 1 3.1684 -5.2642 3.3088 37 1 1.6795 -6.2383 3.3650 38 1 3.2907 -3.2567 4.6733 39 1 1.8873 -2.8302 5.6820 40 1 2.0634 -1.3741 3.6595 41 1 0.5618 -2.3321 3.6625 42 1 0.3439 -2.1500 1.2285 43 1 1.6682 -2.6555 0.1509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = -112.448611 kcal Electronic energy + Delta-G solvation = -22288.744451 eV Core-core repulsion = 19139.853156 eV Total energy + Delta-G solvation = -3148.891296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77660 -39.22590 -37.82430 -34.91015 -34.24071 -32.92446 -32.02958 -30.21472 -28.72803 -27.21177 -25.04487 -24.75890 -23.92512 -22.95251 -21.12290 -20.20747 -18.60496 -17.71590 -17.19902 -16.91489 -16.77124 -16.42424 -16.18709 -15.72776 -15.57573 -15.42540 -14.93516 -14.58814 -14.22290 -13.91218 -13.66678 -13.57643 -13.34486 -13.12396 -12.92920 -12.75345 -12.63767 -12.53064 -12.33557 -12.22109 -12.12451 -11.93906 -11.37939 -11.35929 -11.23211 -11.03376 -10.65413 -10.59396 -10.22612 -9.03782 -8.22348 -6.31953 1.39477 1.40791 1.51738 2.38436 2.72438 2.97431 3.10138 3.19881 3.58471 3.73469 3.78855 3.93669 4.01426 4.11464 4.18925 4.31252 4.33770 4.36566 4.45464 4.51440 4.65152 4.69059 4.69543 4.76687 4.79164 4.83135 4.90981 4.96841 5.02095 5.05033 5.08745 5.12524 5.18669 5.27264 5.32136 5.36013 5.64111 6.04704 6.23994 6.26880 6.32715 6.63201 6.84066 7.37598 8.88695 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040842 B = 0.004281 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.403341 B = 6538.509869 C = 6735.195204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.545 5.545 3 C 0.206 3.794 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.265 1.265 11 H -0.282 1.282 12 C 0.084 3.916 13 H 0.023 0.977 14 C -0.144 4.144 15 C 0.069 3.931 16 O -0.377 6.377 17 C 0.119 3.881 18 C -0.136 4.136 19 C 0.063 3.937 20 O -0.398 6.398 21 C 0.068 3.932 22 C -0.182 4.182 23 C -0.123 4.123 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.006 0.994 27 H 0.015 0.985 28 H -0.045 1.045 29 H 0.264 0.736 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 -16.660 8.656 18.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.269 5.269 3 C 0.080 3.920 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.189 1.189 11 H -0.207 1.207 12 C -0.025 4.025 13 H 0.041 0.959 14 C -0.182 4.182 15 C -0.008 4.008 16 O -0.296 6.296 17 C 0.079 3.921 18 C -0.173 4.173 19 C -0.014 4.014 20 O -0.317 6.317 21 C -0.009 4.009 22 C -0.219 4.219 23 C -0.161 4.161 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.025 0.975 27 H 0.033 0.967 28 H -0.027 1.027 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.068 -16.981 8.371 18.962 hybrid contribution -0.255 2.057 -0.316 2.097 sum -1.323 -14.924 8.056 17.011 Atomic orbital electron populations 1.22246 0.87806 1.01168 0.99735 1.62111 1.07945 1.15255 1.41552 1.19432 0.94409 0.83556 0.94589 1.21483 1.34878 0.97557 1.02398 0.92090 1.25892 0.95017 0.98008 1.00624 1.70080 1.39363 1.11920 1.36085 0.85402 0.78959 0.77291 0.79089 1.19861 1.18908 1.20722 1.21659 0.95030 0.94337 0.91432 0.95891 1.22212 0.95239 1.00279 1.00468 1.22600 0.98633 0.83114 0.96469 1.87886 1.19668 1.28311 1.93719 1.21480 0.81159 0.96358 0.93057 1.22186 1.01766 0.92669 1.00695 1.22646 0.99496 0.96484 0.82732 1.87871 1.76156 1.27806 1.39912 1.22530 0.98062 0.81941 0.98347 1.22799 1.02903 1.00334 0.95894 1.22193 1.00685 0.93656 0.99530 0.92564 0.89879 0.97521 0.96657 1.02721 0.92696 0.91685 0.92589 0.92410 0.87088 0.88905 0.89320 0.92800 0.86911 0.92826 0.87723 0.90911 0.89907 0.90200 0.90967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 8.99 127.69 1.15 2.64 16 2 N -0.54 -23.73 4.62 -900.86 -4.16 -27.89 16 3 C 0.21 11.08 4.54 85.55 0.39 11.47 16 4 C -0.52 -30.06 8.51 25.60 0.22 -29.84 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16 6 C 0.00 0.15 5.46 84.66 0.46 0.61 16 7 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 8 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.08 2.98 1.72 45.04 0.08 3.06 16 13 H 0.02 0.86 6.71 -2.39 -0.02 0.84 16 14 C -0.14 -4.94 5.12 30.68 0.16 -4.79 16 15 C 0.07 1.82 6.52 72.01 0.47 2.29 16 16 O -0.38 -9.88 9.20 -148.98 -1.37 -11.25 16 17 C 0.12 2.86 0.69 -10.72 -0.01 2.85 16 18 C -0.14 -2.63 5.15 30.67 0.16 -2.47 16 19 C 0.06 1.16 6.70 72.02 0.48 1.64 16 20 O -0.40 -8.81 10.76 -148.98 -1.60 -10.41 16 21 C 0.07 1.39 6.70 72.02 0.48 1.87 16 22 C -0.18 -4.10 4.24 30.67 0.13 -3.97 16 23 C -0.12 -3.46 3.74 30.66 0.11 -3.34 16 24 H 0.06 2.35 6.86 -2.38 -0.02 2.33 16 25 H 0.08 2.60 6.09 -2.39 -0.01 2.59 16 26 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.02 0.88 5.92 -2.38 -0.01 0.87 16 28 H -0.04 -2.65 8.12 -2.39 -0.02 -2.66 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.06 2.37 8.14 -2.38 -0.02 2.36 16 31 H 0.06 2.18 6.39 -2.39 -0.02 2.17 16 32 H 0.06 1.43 6.29 -2.39 -0.01 1.42 16 33 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 37 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.11 7.82 -2.38 -0.02 1.09 16 39 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.78 5.00 -2.39 -0.01 1.77 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 2.08 6.47 -2.39 -0.02 2.06 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.17 318.99 0.43 -64.74 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.98 Total: 12.35 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.28 Total: -17.98 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -3.88 Total: -83.96 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -2.97 Total: -21.66 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -65.17 0.43 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.712 kcal (2) G-P(sol) polarization free energy of solvation -65.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds