Wall clock time and date at job start Mon Mar 30 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00158 * 2 1 4 4 H 1.08997 * 109.43339 * 30.08695 * 3 2 1 5 5 C 1.52953 * 109.40063 * 270.19791 * 3 2 1 6 6 C 1.53084 * 109.68144 * 299.44087 * 5 3 2 7 7 C 1.52889 * 109.22814 * 300.23646 * 6 5 3 8 8 H 1.08992 * 109.44650 * 300.70131 * 7 6 5 9 9 O 1.42871 * 110.16844 * 180.40510 * 7 6 5 10 10 C 1.43114 * 113.43381 * 180.88989 * 9 7 6 11 11 C 1.53050 * 109.48651 * 58.40546 * 10 9 7 12 12 N 1.47093 * 109.48333 * 303.66370 * 11 10 9 13 13 C 1.46896 * 111.00201 * 181.90912 * 12 11 10 14 14 C 1.52996 * 109.47256 * 46.69601 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.46875 * 110.49425 * 58.31694 * 12 11 10 24 24 H 1.08993 * 109.45577 * 60.65208 * 23 12 11 25 25 C 1.52894 * 110.12590 * 181.03642 * 23 12 11 26 26 H 1.08997 * 109.46843 * 59.99950 * 1 2 3 27 27 H 1.08996 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46946 * 299.99992 * 1 2 3 29 29 H 1.08993 * 109.44044 * 59.50770 * 5 3 2 30 30 H 1.09009 * 109.43662 * 179.38265 * 5 3 2 31 31 H 1.09008 * 109.50493 * 60.16002 * 6 5 3 32 32 H 1.08996 * 109.51478 * 180.30783 * 6 5 3 33 33 H 1.08998 * 109.47105 * 178.41136 * 10 9 7 34 34 H 1.08998 * 109.46879 * 298.39795 * 10 9 7 35 35 H 1.09006 * 109.46932 * 183.65670 * 11 10 9 36 36 H 1.08998 * 109.46780 * 63.66590 * 11 10 9 37 37 H 1.09004 * 109.46774 * 286.69800 * 13 12 11 38 38 H 1.09000 * 109.47723 * 166.70188 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 40 40 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.50903 * 300.28428 * 25 23 12 43 43 H 1.08995 * 109.51275 * 60.38350 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3453 1.9985 0.5153 5 6 2.2124 1.7716 -1.4427 6 6 3.1546 0.8080 -2.1686 7 6 4.5005 0.7781 -1.4438 8 1 4.9269 1.7810 -1.4288 9 8 5.3997 -0.1093 -2.1111 10 6 6.6790 -0.2060 -1.4770 11 6 6.4989 -0.6837 -0.0341 12 7 5.5890 0.2290 0.6749 13 6 5.4278 -0.1734 2.0784 14 6 6.8008 -0.4696 2.6849 15 6 6.6353 -0.8831 4.1247 16 1 5.6494 -0.9303 4.5631 17 6 7.7421 -1.2072 4.8804 18 7 8.9426 -1.1500 4.3464 19 14 7.5364 -1.7270 6.6627 20 1 7.3661 -3.2006 6.7320 21 1 8.7407 -1.3311 7.4360 22 1 6.3388 -1.0629 7.2371 23 6 4.2897 0.2922 -0.0071 24 1 3.8393 -0.7002 -0.0228 25 6 3.3595 1.2623 0.7218 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.2506 1.7933 -1.9550 30 1 2.6456 2.7719 -1.4433 31 1 2.7207 -0.1920 -2.1721 32 1 3.3011 1.1457 -3.1946 33 1 7.3009 -0.9175 -2.0202 34 1 7.1601 0.7720 -1.4785 35 1 7.4662 -0.6951 0.4683 36 1 6.0777 -1.6890 -0.0342 37 1 4.8068 -1.0677 2.1309 38 1 4.9509 0.6332 2.6353 39 1 7.4218 0.4247 2.6325 40 1 7.2776 -1.2762 2.1282 41 1 9.7213 -1.3777 4.8782 42 1 3.2130 0.9247 1.7477 43 1 3.8029 2.2580 0.7261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247055926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:52 Heat of formation + Delta-G solvation = -96.962786 kcal Electronic energy + Delta-G solvation = -22096.339507 eV Core-core repulsion = 18948.119727 eV Total energy + Delta-G solvation = -3148.219780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24684 -38.19595 -35.90669 -34.98211 -32.93832 -30.43049 -29.95275 -29.54130 -26.61739 -26.55681 -24.13074 -23.30960 -22.10218 -20.87251 -19.81984 -19.43507 -16.79203 -16.32502 -16.18339 -15.76724 -15.45053 -15.43567 -14.62245 -14.57258 -14.20431 -13.68535 -13.45935 -13.29694 -13.00891 -12.77230 -12.29751 -12.12391 -12.04662 -11.97119 -11.47916 -11.25068 -11.10043 -10.98309 -10.92058 -10.60898 -10.53534 -10.31014 -10.11006 -9.92579 -9.60606 -9.39627 -9.08737 -9.01561 -8.34285 -7.70590 -6.00393 -4.02376 3.32137 3.38299 3.41692 3.70110 3.95088 4.27035 4.48949 4.71713 4.74545 5.08135 5.11361 5.14089 5.23512 5.25793 5.35830 5.40353 5.42339 5.51776 5.52473 5.56267 5.63613 5.65800 5.77730 5.86269 5.99439 6.05879 6.17558 6.21929 6.26855 6.36622 6.38983 6.51121 6.57016 6.94871 7.15552 7.42233 7.48965 7.59850 7.77624 7.85386 8.04338 8.43175 9.04027 9.61301 11.11076 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.005006 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.511574 B = 5592.173583 C = 6598.332090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.088 3.912 4 H 0.063 0.937 5 C -0.136 4.136 6 C -0.104 4.104 7 C 0.100 3.900 8 H 0.060 0.940 9 O -0.387 6.387 10 C 0.065 3.935 11 C 0.017 3.983 12 N -0.535 5.535 13 C 0.063 3.937 14 C 0.021 3.979 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.060 3.940 24 H 0.053 0.947 25 C -0.108 4.108 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.019 0.981 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 5.623 -12.611 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.030 3.970 4 H 0.081 0.919 5 C -0.174 4.174 6 C -0.142 4.142 7 C 0.042 3.958 8 H 0.078 0.922 9 O -0.307 6.307 10 C -0.012 4.012 11 C -0.112 4.112 12 N -0.260 5.260 13 C -0.064 4.064 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.049 4.049 24 H 0.071 0.929 25 C -0.146 4.146 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.130 5.799 -12.735 19.189 hybrid contribution -0.489 -0.816 1.353 1.654 sum -13.619 4.983 -11.382 18.435 Atomic orbital electron populations 1.22760 0.81755 1.02549 0.99565 1.88000 1.18975 1.27665 1.94947 1.22199 0.94989 0.84686 0.95124 0.91909 1.21985 0.99762 0.99465 0.96193 1.21344 0.93264 1.00981 0.98605 1.22076 0.90055 0.92952 0.90725 0.92183 1.87902 1.24404 1.66240 1.52107 1.22706 0.84684 1.01108 0.92694 1.22830 0.99720 0.94397 0.94209 1.62433 1.09672 1.50320 1.03552 1.22340 1.01075 0.97580 0.85376 1.19233 0.90348 0.97128 0.94900 1.21178 0.92918 1.45447 0.96376 0.92784 1.24984 0.95267 0.95625 0.98391 1.69965 0.97867 1.48921 1.36579 0.86591 0.77591 0.78837 0.84964 1.20709 1.21196 1.19887 1.22092 0.90352 0.98880 0.93620 0.92914 1.21677 0.92416 1.00676 0.99798 0.94374 0.89879 0.94213 0.91446 0.90743 0.90603 0.91408 0.88881 0.92619 0.88018 0.94564 0.96101 0.91748 0.95742 0.96251 0.92999 0.90403 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.91 9.01 -35.23 -0.32 -5.23 16 3 C 0.09 1.02 2.91 -26.71 -0.08 0.95 16 4 H 0.06 0.62 7.78 -51.93 -0.40 0.21 16 5 C -0.14 -1.38 5.61 -26.71 -0.15 -1.53 16 6 C -0.10 -1.27 5.47 -26.75 -0.15 -1.42 16 7 C 0.10 1.48 2.63 -26.72 -0.07 1.41 16 8 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 9 O -0.39 -6.32 10.52 -35.23 -0.37 -6.69 16 10 C 0.06 1.01 7.00 37.18 0.26 1.27 16 11 C 0.02 0.31 4.93 -3.69 -0.02 0.29 16 12 N -0.53 -10.19 4.72 -226.46 -1.07 -11.25 16 13 C 0.06 1.37 4.43 -3.83 -0.02 1.35 16 14 C 0.02 0.55 4.26 -27.88 -0.12 0.43 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.06 0.98 1.62 -67.72 -0.11 0.87 16 24 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 25 C -0.11 -1.53 4.69 -26.74 -0.13 -1.66 16 26 H 0.04 0.30 7.83 -51.93 -0.41 -0.11 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.08 1.02 7.72 -51.92 -0.40 0.62 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 2.03 6.08 -51.93 -0.32 1.72 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.06 1.38 6.90 -51.93 -0.36 1.02 16 39 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.53 6.28 -51.93 -0.33 0.20 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.21 6.64 -51.93 -0.35 0.86 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -31.11 327.52 -8.54 -39.66 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.55 Total: -1.84 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 0.11 Total: -10.22 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.33 Total: -37.37 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.69 Total: -11.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.11 -8.54 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247055926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.306 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds