Wall clock time and date at job start Mon Mar 30 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00158 * 2 1 4 4 H 1.08997 * 109.43339 * 30.08695 * 3 2 1 5 5 C 1.52953 * 109.40063 * 270.19791 * 3 2 1 6 6 C 1.53084 * 109.68144 * 299.44087 * 5 3 2 7 7 C 1.52889 * 109.22814 * 300.23646 * 6 5 3 8 8 H 1.08992 * 109.44650 * 300.70131 * 7 6 5 9 9 O 1.42871 * 110.16844 * 180.40510 * 7 6 5 10 10 C 1.43114 * 113.43381 * 180.88989 * 9 7 6 11 11 C 1.53050 * 109.48651 * 58.40546 * 10 9 7 12 12 N 1.47093 * 109.48333 * 303.66370 * 11 10 9 13 13 C 1.46896 * 111.00201 * 181.90912 * 12 11 10 14 14 C 1.52996 * 109.47256 * 46.69601 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.46875 * 110.49425 * 58.31694 * 12 11 10 24 24 H 1.08993 * 109.45577 * 60.65208 * 23 12 11 25 25 C 1.52894 * 110.12590 * 181.03642 * 23 12 11 26 26 H 1.08997 * 109.46843 * 59.99950 * 1 2 3 27 27 H 1.08996 * 109.46816 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46946 * 299.99992 * 1 2 3 29 29 H 1.08993 * 109.44044 * 59.50770 * 5 3 2 30 30 H 1.09009 * 109.43662 * 179.38265 * 5 3 2 31 31 H 1.09008 * 109.50493 * 60.16002 * 6 5 3 32 32 H 1.08996 * 109.51478 * 180.30783 * 6 5 3 33 33 H 1.08998 * 109.47105 * 178.41136 * 10 9 7 34 34 H 1.08998 * 109.46879 * 298.39795 * 10 9 7 35 35 H 1.09006 * 109.46932 * 183.65670 * 11 10 9 36 36 H 1.08998 * 109.46780 * 63.66590 * 11 10 9 37 37 H 1.09004 * 109.46774 * 286.69800 * 13 12 11 38 38 H 1.09000 * 109.47723 * 166.70188 * 13 12 11 39 39 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 40 40 H 1.08994 * 109.47405 * 300.00209 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.08992 * 109.50903 * 300.28428 * 25 23 12 43 43 H 1.08995 * 109.51275 * 60.38350 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3453 1.9985 0.5153 5 6 2.2124 1.7716 -1.4427 6 6 3.1546 0.8080 -2.1686 7 6 4.5005 0.7781 -1.4438 8 1 4.9269 1.7810 -1.4288 9 8 5.3997 -0.1093 -2.1111 10 6 6.6790 -0.2060 -1.4770 11 6 6.4989 -0.6837 -0.0341 12 7 5.5890 0.2290 0.6749 13 6 5.4278 -0.1734 2.0784 14 6 6.8008 -0.4696 2.6849 15 6 6.6353 -0.8831 4.1247 16 1 5.6494 -0.9303 4.5631 17 6 7.7421 -1.2072 4.8804 18 7 8.9426 -1.1500 4.3464 19 14 7.5364 -1.7270 6.6627 20 1 7.3661 -3.2006 6.7320 21 1 8.7407 -1.3311 7.4360 22 1 6.3388 -1.0629 7.2371 23 6 4.2897 0.2922 -0.0071 24 1 3.8393 -0.7002 -0.0228 25 6 3.3595 1.2623 0.7218 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.2506 1.7933 -1.9550 30 1 2.6456 2.7719 -1.4433 31 1 2.7207 -0.1920 -2.1721 32 1 3.3011 1.1457 -3.1946 33 1 7.3009 -0.9175 -2.0202 34 1 7.1601 0.7720 -1.4785 35 1 7.4662 -0.6951 0.4683 36 1 6.0777 -1.6890 -0.0342 37 1 4.8068 -1.0677 2.1309 38 1 4.9509 0.6332 2.6353 39 1 7.4218 0.4247 2.6325 40 1 7.2776 -1.2762 2.1282 41 1 9.7213 -1.3777 4.8782 42 1 3.2130 0.9247 1.7477 43 1 3.8029 2.2580 0.7261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247055926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:51 Heat of formation + Delta-G solvation = -118.499081 kcal Electronic energy + Delta-G solvation = -22097.273391 eV Core-core repulsion = 18948.119727 eV Total energy + Delta-G solvation = -3149.153664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47391 -39.24122 -37.45972 -36.04291 -35.02003 -31.96950 -31.36177 -30.78089 -28.23474 -27.32163 -25.91693 -24.63156 -23.43924 -22.30086 -21.06284 -20.85327 -18.69125 -17.63420 -17.27718 -16.91796 -16.80070 -16.53130 -16.49457 -15.92731 -15.55019 -15.03954 -14.88236 -14.65345 -14.26137 -13.98121 -13.86962 -13.62459 -13.32873 -13.04620 -12.97700 -12.83027 -12.47692 -12.39249 -12.30680 -12.17050 -11.93012 -11.67837 -11.53102 -11.32989 -11.23804 -11.13758 -10.58743 -10.56377 -10.28474 -9.32900 -8.22517 -6.33703 1.38670 1.40013 1.51280 2.38260 2.69568 2.87760 2.95140 3.10928 3.65506 3.80700 3.91855 4.05111 4.10246 4.16020 4.22580 4.28795 4.35392 4.39914 4.49072 4.51543 4.56421 4.60405 4.67042 4.74854 4.83428 4.86297 4.87089 4.92428 4.99905 5.01864 5.10738 5.16503 5.23056 5.37019 5.41107 5.59943 5.73890 5.97739 6.11712 6.23735 6.26939 6.37262 6.81395 7.35179 8.89478 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.005006 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.511574 B = 5592.173583 C = 6598.332090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.089 3.911 4 H 0.087 0.913 5 C -0.130 4.130 6 C -0.098 4.098 7 C 0.098 3.902 8 H 0.068 0.932 9 O -0.396 6.396 10 C 0.072 3.928 11 C 0.017 3.983 12 N -0.537 5.537 13 C 0.082 3.918 14 C 0.032 3.968 15 C -0.546 4.546 16 H 0.056 0.944 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.062 3.938 24 H 0.025 0.975 25 C -0.108 4.108 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.019 0.981 37 H 0.007 0.993 38 H 0.069 0.931 39 H -0.002 1.002 40 H -0.001 1.001 41 H 0.265 0.735 42 H 0.057 0.943 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.270 6.745 -13.059 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.031 3.969 4 H 0.104 0.896 5 C -0.167 4.167 6 C -0.136 4.136 7 C 0.041 3.959 8 H 0.086 0.914 9 O -0.316 6.316 10 C -0.004 4.004 11 C -0.112 4.112 12 N -0.262 5.262 13 C -0.045 4.045 14 C -0.005 4.005 15 C -0.585 4.585 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.790 3.210 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.188 1.188 23 C -0.047 4.047 24 H 0.043 0.957 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.026 0.974 38 H 0.087 0.913 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.827 6.927 -13.199 21.025 hybrid contribution 0.042 -1.190 1.469 1.892 sum -14.785 5.736 -11.730 19.725 Atomic orbital electron populations 1.22932 0.79957 1.03289 1.00916 1.87966 1.21067 1.28642 1.95187 1.22234 0.93629 0.84841 0.96170 0.89556 1.21992 1.00458 0.99462 0.94785 1.21353 0.91832 1.00946 0.99511 1.22271 0.91363 0.92753 0.89554 0.91363 1.87904 1.24690 1.66772 1.52189 1.22710 0.85043 1.02122 0.90557 1.22808 0.98315 0.93802 0.96227 1.62449 1.11473 1.49875 1.02371 1.21975 0.98077 0.97112 0.87343 1.19040 0.92054 0.95013 0.94430 1.21576 0.93296 1.45983 0.97608 0.92532 1.25923 0.94776 0.95316 1.03339 1.70092 0.98755 1.49507 1.38539 0.85443 0.78020 0.78642 0.78916 1.19900 1.20429 1.18773 1.22177 0.88966 0.98360 0.95154 0.95699 1.21697 0.93838 1.00196 0.98818 0.92425 0.89617 0.93347 0.89080 0.88945 0.92234 0.89677 0.86612 0.91678 0.90280 0.96220 0.97424 0.91251 0.98368 0.98324 0.92665 0.92405 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.15 9.01 -148.98 -1.34 -11.50 16 3 C 0.09 1.88 2.91 30.61 0.09 1.96 16 4 H 0.09 1.42 7.78 -2.39 -0.02 1.40 16 5 C -0.13 -2.18 5.61 30.61 0.17 -2.01 16 6 C -0.10 -2.18 5.47 30.59 0.17 -2.01 16 7 C 0.10 2.79 2.63 30.60 0.08 2.87 16 8 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 9 O -0.40 -12.55 10.52 -148.98 -1.57 -14.11 16 10 C 0.07 2.23 7.00 72.00 0.50 2.73 16 11 C 0.02 0.65 4.93 86.28 0.42 1.07 16 12 N -0.54 -21.08 4.72 -870.40 -4.10 -25.18 16 13 C 0.08 3.74 4.43 86.30 0.38 4.12 16 14 C 0.03 1.75 4.26 29.85 0.13 1.87 16 15 C -0.55 -31.95 9.11 25.60 0.23 -31.71 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 19 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 23 C 0.06 2.06 1.62 44.93 0.07 2.13 16 24 H 0.02 0.97 7.65 -2.39 -0.02 0.95 16 25 C -0.11 -2.98 4.69 30.59 0.14 -2.83 16 26 H 0.06 0.72 7.83 -2.39 -0.02 0.70 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.09 1.17 7.83 -2.39 -0.02 1.15 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.06 1.53 7.72 -2.38 -0.02 1.51 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 3.38 6.08 -2.38 -0.01 3.36 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.01 0.36 8.08 -2.38 -0.02 0.34 16 38 H 0.07 3.06 6.90 -2.39 -0.02 3.04 16 39 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 40 H 0.00 -0.09 6.28 -2.39 -0.02 -0.10 16 41 H 0.26 15.19 8.31 -92.70 -0.77 14.41 16 42 H 0.06 1.81 6.64 -2.39 -0.02 1.79 16 43 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -68.59 327.52 0.34 -68.25 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.96 Total: 11.78 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 4.08 Total: -19.43 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.82 Total: -81.87 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -2.91 Total: -25.61 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -68.59 0.34 -68.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247055926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.253 kcal (2) G-P(sol) polarization free energy of solvation -68.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds