Wall clock time and date at job start Mon Mar 30 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99764 * 2 1 4 4 H 1.08992 * 109.47503 * 29.99128 * 3 2 1 5 5 C 1.53002 * 109.47088 * 269.99364 * 3 2 1 6 6 C 1.53000 * 109.47574 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46872 * 59.99667 * 6 5 3 8 8 C 1.52999 * 109.47618 * 300.00339 * 7 6 5 9 9 C 1.53001 * 109.47157 * 149.99914 * 3 2 1 10 10 H 1.09005 * 109.46709 * 299.99470 * 9 3 2 11 11 C 1.50699 * 109.47515 * 59.99650 * 9 3 2 12 12 O 1.21283 * 119.99479 * 6.19548 * 11 9 3 13 13 N 1.34776 * 119.99971 * 186.20019 * 11 9 3 14 14 C 1.46496 * 119.99690 * 185.08792 * 13 11 9 15 15 C 1.46497 * 120.00316 * 5.08975 * 13 11 9 16 16 H 1.09006 * 109.46911 * 355.23165 * 15 13 11 17 17 C 1.52998 * 109.47245 * 235.22638 * 15 13 11 18 18 C 1.50705 * 109.47117 * 115.22408 * 15 13 11 19 19 H 1.07997 * 119.99700 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99862 * 179.97438 * 18 15 13 21 21 N 1.31512 * 119.99983 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 119.99932 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.46713 * 60.00382 * 22 20 18 24 24 H 1.48496 * 109.46926 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47149 * 300.00456 * 22 20 18 26 26 H 1.08994 * 109.47409 * 300.00989 * 1 2 3 27 27 H 1.09006 * 109.46332 * 60.00897 * 1 2 3 28 28 H 1.08993 * 109.46701 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46866 * 59.99698 * 5 3 2 30 30 H 1.09002 * 109.47219 * 300.00435 * 5 3 2 31 31 H 1.09004 * 109.46557 * 300.00198 * 6 5 3 32 32 H 1.08993 * 109.46984 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47096 * 60.00861 * 7 6 5 34 34 H 1.08998 * 109.47011 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.47007 * 179.97438 * 8 7 6 36 36 H 1.08992 * 109.46728 * 300.00067 * 8 7 6 37 37 H 1.09007 * 109.47275 * 84.90317 * 14 13 11 38 38 H 1.09006 * 109.47384 * 204.89913 * 14 13 11 39 39 H 1.09000 * 109.47689 * 324.89842 * 14 13 11 40 40 H 1.09000 * 109.47235 * 179.97438 * 17 15 13 41 41 H 1.08994 * 109.47224 * 300.00078 * 17 15 13 42 42 H 1.09007 * 109.46860 * 59.99948 * 17 15 13 43 43 H 0.97001 * 119.99874 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5136 5 6 2.2178 1.7713 -1.4425 6 6 2.8406 3.1688 -1.4427 7 6 4.1893 3.1261 -0.7214 8 6 3.9818 2.6603 0.7211 9 6 3.3589 1.2634 0.7213 10 1 3.2110 0.9315 1.7490 11 6 4.2787 0.3040 0.0110 12 8 3.9355 -0.2021 -1.0364 13 7 5.4827 0.0083 0.5398 14 6 6.4218 -0.8355 -0.2033 15 6 5.8522 0.5306 1.8577 16 1 5.0698 1.1999 2.2156 17 6 7.1710 1.2987 1.7504 18 6 6.0147 -0.6142 2.8242 19 1 5.8588 -1.6293 2.4901 20 6 6.3635 -0.3657 4.1348 21 7 6.5538 0.8704 4.5415 22 14 6.5657 -1.7847 5.3327 23 1 7.6313 -2.6964 4.8446 24 1 6.9401 -1.2552 6.6686 25 1 5.2858 -2.5304 5.4372 26 1 -0.3634 0.5139 0.8898 27 1 -0.3632 0.5137 -0.8902 28 1 -0.3632 -1.0276 -0.0005 29 1 1.2570 1.8013 -1.9564 30 1 2.8831 1.0774 -1.9563 31 1 2.1756 3.8630 -0.9287 32 1 2.9880 3.5008 -2.4703 33 1 4.8543 2.4320 -1.2353 34 1 4.6332 4.1216 -0.7219 35 1 4.9427 2.6295 1.2347 36 1 3.3169 3.3545 1.2349 37 1 6.9930 -0.2191 -0.8977 38 1 7.1027 -1.3230 0.4944 39 1 5.8686 -1.5922 -0.7597 40 1 7.4457 1.6877 2.7309 41 1 7.9532 0.6294 1.3925 42 1 7.0534 2.1267 1.0513 43 1 6.7989 1.0453 5.4636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339932271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:54 Heat of formation + Delta-G solvation = -105.476386 kcal Electronic energy + Delta-G solvation = -22863.220937 eV Core-core repulsion = 19714.631980 eV Total energy + Delta-G solvation = -3148.588957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67982 -39.08195 -37.23166 -37.10406 -34.52971 -32.26489 -30.95561 -30.82275 -28.00377 -27.25359 -27.14649 -24.15711 -23.16559 -23.01084 -21.50905 -19.43961 -18.54209 -17.64524 -17.56882 -16.90891 -16.36343 -16.17953 -16.12417 -15.66946 -15.15258 -14.74704 -14.55672 -14.46092 -14.24042 -13.70330 -13.50055 -13.29209 -13.11033 -12.93554 -12.85445 -12.75170 -12.66992 -12.48935 -12.34254 -12.17436 -12.01916 -11.81466 -11.64838 -11.38699 -11.28273 -11.15151 -10.49184 -10.30076 -10.13833 -9.26469 -8.13203 -6.27301 1.42374 1.43772 1.50635 1.91491 2.37427 2.53187 2.90043 3.14040 3.66734 3.76005 4.02317 4.11899 4.23894 4.27017 4.35132 4.50612 4.52610 4.58123 4.61139 4.62058 4.68045 4.75333 4.83011 4.84920 4.95127 4.96352 4.97672 5.09783 5.10092 5.19428 5.25672 5.31367 5.35599 5.46646 5.58712 5.67924 5.79190 6.07353 6.25253 6.43809 6.70558 6.92287 7.39523 7.55537 8.88903 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020772 B = 0.006583 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.613601 B = 4252.644324 C = 4622.316816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.114 3.886 4 H 0.083 0.917 5 C -0.153 4.153 6 C -0.106 4.106 7 C -0.118 4.118 8 C -0.110 4.110 9 C -0.104 4.104 10 H 0.080 0.920 11 C 0.520 3.480 12 O -0.575 6.575 13 N -0.603 5.603 14 C 0.097 3.903 15 C 0.258 3.742 16 H 0.052 0.948 17 C -0.137 4.137 18 C -0.548 4.548 19 H 0.044 0.956 20 C 0.031 3.969 21 N -0.905 5.905 22 Si 0.949 3.051 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.280 1.280 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 6.135 -7.204 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.056 3.944 4 H 0.100 0.900 5 C -0.190 4.190 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.148 4.148 9 C -0.125 4.125 10 H 0.098 0.902 11 C 0.309 3.691 12 O -0.457 6.457 13 N -0.334 5.334 14 C -0.046 4.046 15 C 0.157 3.843 16 H 0.070 0.930 17 C -0.196 4.196 18 C -0.587 4.587 19 H 0.062 0.938 20 C -0.170 4.170 21 N -0.543 5.543 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.205 1.205 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.448 5.808 -7.562 12.099 hybrid contribution 0.218 -0.981 0.952 1.384 sum -7.230 4.827 -6.611 10.921 Atomic orbital electron populations 1.22931 0.80192 1.03257 1.00711 1.88036 1.20871 1.28659 1.95134 1.21918 0.92019 0.84326 0.96124 0.89960 1.22279 1.01915 0.98238 0.96608 1.21460 0.95980 0.95836 1.01105 1.21545 0.97996 1.01457 0.94502 1.21658 1.01823 0.92821 0.98500 1.21417 0.94646 0.96662 0.99782 0.90200 1.20638 0.81715 0.81933 0.84808 1.90479 1.75072 1.54791 1.25378 1.48273 1.15521 1.49468 1.20152 1.21366 0.92873 0.94465 0.95898 1.18943 0.94508 0.93234 0.77661 0.93005 1.21941 0.98065 0.98044 1.01543 1.21588 1.48269 0.93446 0.95363 0.93771 1.25442 0.94587 0.97796 0.99179 1.69916 1.47323 1.19444 1.17630 0.85758 0.78364 0.79939 0.78450 1.19970 1.20317 1.20550 0.93020 0.93004 0.89478 0.91420 0.90760 0.90054 0.90762 0.94547 0.89618 0.91182 0.88765 0.92798 0.91226 0.92909 0.90733 0.94979 0.94906 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.82 113.37 1.23 1.86 16 2 O -0.41 -14.70 9.40 -133.48 -1.26 -15.95 16 3 C 0.11 3.64 2.19 30.60 0.07 3.71 16 4 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 5 C -0.15 -4.51 5.25 30.59 0.16 -4.35 16 6 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 7 C -0.12 -3.23 5.70 30.59 0.17 -3.06 16 8 C -0.11 -3.43 5.04 30.58 0.15 -3.28 16 9 C -0.10 -3.84 1.90 -11.56 -0.02 -3.86 16 10 H 0.08 3.29 7.32 -2.38 -0.02 3.27 16 11 C 0.52 22.48 5.34 87.66 0.47 22.95 16 12 O -0.58 -26.82 12.52 12.46 0.16 -26.66 16 13 N -0.60 -26.71 2.75 -826.78 -2.28 -28.98 16 14 C 0.10 3.92 9.30 127.77 1.19 5.11 16 15 C 0.26 12.14 1.69 44.25 0.07 12.22 16 16 H 0.05 2.53 4.39 -2.38 -0.01 2.52 16 17 C -0.14 -6.10 8.58 71.98 0.62 -5.48 16 18 C -0.55 -28.90 8.05 25.60 0.21 -28.69 16 19 H 0.04 2.42 7.75 -2.91 -0.02 2.40 16 20 C 0.03 1.60 5.30 84.66 0.45 2.05 16 21 N -0.90 -47.62 11.32 21.45 0.24 -47.38 16 22 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.05 1.11 7.87 -2.38 -0.02 1.09 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 1.74 7.87 -2.39 -0.02 1.72 16 30 H 0.07 2.78 5.29 -2.39 -0.01 2.77 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.19 7.22 -2.39 -0.02 1.18 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.48 4.89 -2.39 -0.01 2.47 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.07 2.82 7.29 -2.38 -0.02 2.81 16 39 H 0.05 2.14 7.51 -2.39 -0.02 2.12 16 40 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 41 H 0.03 1.38 7.44 -2.39 -0.02 1.36 16 42 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 43 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -61.39 323.46 4.82 -56.57 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.98 Total: 21.50 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.95 Total: -3.17 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.03 Total: -76.36 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.10 Total: -42.61 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -61.39 4.82 -56.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339932271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.905 kcal (2) G-P(sol) polarization free energy of solvation -61.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds