Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46812 * 2 1 4 4 C 1.53004 * 109.46850 * 120.00162 * 2 1 3 5 5 C 1.50703 * 109.46847 * 294.42969 * 4 2 1 6 6 H 1.08001 * 120.00117 * 355.59853 * 5 4 2 7 7 C 1.37878 * 119.99763 * 175.59370 * 5 4 2 8 8 N 1.31512 * 120.00120 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99890 * 180.27522 * 7 5 4 10 10 H 1.48497 * 109.47319 * 269.72972 * 9 7 5 11 11 H 1.48500 * 109.47021 * 29.72908 * 9 7 5 12 12 H 1.48508 * 109.46860 * 149.72812 * 9 7 5 13 13 N 1.46897 * 109.47141 * 239.99793 * 2 1 3 14 14 C 1.47010 * 111.00202 * 299.25035 * 13 2 1 15 15 C 1.53091 * 109.29914 * 177.60999 * 14 13 2 16 16 O 1.43037 * 109.24757 * 56.86426 * 15 14 13 17 17 C 1.42933 * 113.71425 * 301.42957 * 16 15 14 18 18 C 1.53093 * 109.50661 * 178.66078 * 17 16 15 19 19 C 1.53198 * 109.02988 * 63.10038 * 18 17 16 20 20 C 1.53087 * 109.16053 * 56.87054 * 19 18 17 21 21 O 1.42909 * 109.45012 * 302.38376 * 20 19 18 22 22 C 1.42918 * 114.07794 * 61.17776 * 21 20 19 23 23 C 1.47032 * 110.99891 * 175.62589 * 13 2 1 24 24 H 1.09000 * 109.47108 * 59.99917 * 1 2 3 25 25 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47427 * 300.00306 * 1 2 3 27 27 H 1.09001 * 109.46633 * 174.43548 * 4 2 1 28 28 H 1.08994 * 109.47314 * 54.43526 * 4 2 1 29 29 H 0.97000 * 120.00066 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.50100 * 297.55656 * 14 13 2 31 31 H 1.08998 * 109.50216 * 57.66659 * 14 13 2 32 32 H 1.08999 * 109.51406 * 176.79636 * 15 14 13 33 33 H 1.09003 * 109.51098 * 296.93618 * 15 14 13 34 34 H 1.09000 * 109.54459 * 182.96064 * 18 17 16 35 35 H 1.08999 * 109.54299 * 303.23561 * 18 17 16 36 36 H 1.09003 * 109.52000 * 296.97238 * 19 18 17 37 37 H 1.08993 * 109.52228 * 176.77924 * 19 18 17 38 38 H 1.09002 * 109.48086 * 182.39123 * 20 19 18 39 39 H 1.08998 * 109.47784 * 62.37937 * 20 19 18 40 40 H 1.08999 * 109.48844 * 178.94493 * 22 21 20 41 41 H 1.09011 * 109.49201 * 58.90738 * 22 21 20 42 42 H 1.09002 * 109.51152 * 302.20494 * 23 13 2 43 43 H 1.08998 * 109.51047 * 62.34993 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6533 0.0643 2.4759 6 1 1.1622 1.0205 2.3721 7 6 1.9266 -0.4378 3.7305 8 7 2.5250 -1.6021 3.8569 9 14 1.4404 0.5323 5.2510 10 1 2.5573 1.4283 5.6446 11 1 0.2342 1.3460 4.9542 12 1 1.1432 -0.4062 6.3629 13 7 2.0197 -0.6925 -1.1994 14 6 1.5631 -2.0897 -1.2244 15 6 2.0439 -2.7561 -2.5160 16 8 3.4680 -2.6510 -2.5990 17 6 3.9473 -1.3046 -2.5762 18 6 5.4771 -1.3054 -2.6359 19 6 5.9248 -1.9209 -3.9654 20 6 5.2965 -1.1355 -5.1195 21 8 3.8737 -1.1503 -4.9862 22 6 3.3944 -0.5445 -3.7837 23 6 3.4857 -0.6221 -1.2868 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1254 -0.8084 1.2008 28 1 1.5976 -1.7161 1.3005 29 1 2.7176 -1.9552 4.7396 30 1 1.9729 -2.6219 -0.3660 31 1 0.4742 -2.1174 -1.1843 32 1 1.7562 -3.8074 -2.5123 33 1 1.5916 -2.2573 -3.3733 34 1 5.8453 -0.2819 -2.5656 35 1 5.8739 -1.8948 -1.8093 36 1 5.6003 -2.9605 -4.0131 37 1 7.0110 -1.8735 -4.0413 38 1 5.5774 -1.5949 -6.0673 39 1 5.6531 -0.1058 -5.0950 40 1 2.3051 -0.5798 -3.7679 41 1 3.7251 0.4934 -3.7425 42 1 3.8003 0.4215 -1.2947 43 1 3.9264 -1.1294 -0.4286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411725343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = -93.690798 kcal Electronic energy + Delta-G solvation = -22460.276812 eV Core-core repulsion = 19312.198916 eV Total energy + Delta-G solvation = -3148.077896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45796 -38.07273 -36.14864 -33.51355 -32.94957 -31.48084 -30.63116 -28.11103 -27.12413 -25.19592 -24.79392 -23.49285 -22.90771 -21.27237 -19.53641 -18.56629 -16.73991 -16.46508 -16.14648 -15.67505 -15.32730 -14.84241 -14.66255 -14.57304 -14.15758 -13.82111 -13.36384 -13.11725 -12.93046 -12.53850 -12.38945 -12.10384 -11.91920 -11.73185 -11.35841 -11.06643 -11.00762 -10.97096 -10.90204 -10.64712 -10.50424 -10.39340 -10.20226 -9.82636 -9.75465 -9.51967 -9.12959 -8.93681 -8.39480 -7.56888 -6.04884 -4.07427 3.27855 3.34717 3.37455 3.82478 4.06286 4.31828 4.43810 4.79394 4.90420 4.92780 4.96177 5.23268 5.30574 5.33946 5.42676 5.54964 5.55825 5.59365 5.66061 5.74455 5.82758 5.84485 5.97546 6.03114 6.10546 6.18292 6.22824 6.28487 6.31036 6.37608 6.43778 6.75708 6.87548 6.96053 7.17736 7.42296 7.48496 7.52559 7.63680 7.78034 7.95015 8.37616 8.98761 9.56550 11.06187 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031351 B = 0.004770 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.903274 B = 5868.713656 C = 6146.121451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.079 3.921 3 H 0.069 0.931 4 C -0.002 4.002 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.534 5.534 14 C 0.011 3.989 15 C 0.063 3.937 16 O -0.367 6.367 17 C 0.092 3.908 18 C -0.109 4.109 19 C -0.150 4.150 20 C 0.060 3.940 21 O -0.378 6.378 22 C 0.047 3.953 23 C 0.030 3.970 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.013 0.987 28 H 0.022 0.978 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 0.413 -15.514 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 H 0.088 0.912 4 C -0.040 4.040 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.258 5.258 14 C -0.117 4.117 15 C -0.014 4.014 16 O -0.285 6.285 17 C 0.052 3.948 18 C -0.147 4.147 19 C -0.188 4.188 20 C -0.017 4.017 21 O -0.297 6.297 22 C -0.030 4.030 23 C -0.099 4.099 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.343 0.292 -15.951 16.300 hybrid contribution 0.147 0.369 2.116 2.153 sum 3.491 0.661 -13.835 14.283 Atomic orbital electron populations 1.21717 0.95173 1.01061 1.00641 1.21866 0.95104 0.97515 0.88293 0.91244 1.19677 0.96159 0.96380 0.91811 1.21138 1.38650 1.04893 0.90740 0.92537 1.25014 0.95221 0.94953 0.99148 1.69963 1.42000 1.18073 1.23349 0.86622 0.78917 0.79832 0.82814 1.20710 1.19820 1.21249 1.62661 1.08697 1.13520 1.40946 1.22806 1.01230 0.89919 0.97785 1.22687 0.81331 1.00597 0.96781 1.87975 1.21325 1.24870 1.94375 1.22050 0.94261 0.83805 0.94664 1.21559 0.92823 1.01735 0.98567 1.22111 1.00234 1.01589 0.94866 1.22553 0.81741 0.98915 0.98504 1.87939 1.20752 1.80975 1.40009 1.23103 1.00936 0.95208 0.83733 1.22634 0.89850 1.00910 0.96507 0.94157 0.93502 0.91504 0.96897 0.95988 0.93009 0.92851 0.89801 0.89056 0.92592 0.90544 0.90493 0.90296 0.91185 0.89296 0.93613 0.87311 0.92714 0.90393 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.80 37.16 0.33 -2.05 16 2 C 0.08 1.60 2.38 -67.71 -0.16 1.44 16 3 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 4 C 0.00 -0.06 3.69 -27.88 -0.10 -0.16 16 5 C -0.52 -14.11 8.33 -34.44 -0.29 -14.40 16 6 H 0.06 1.50 7.26 -52.49 -0.38 1.12 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.53 -9.37 4.14 -226.38 -0.94 -10.31 16 14 C 0.01 0.19 4.86 -3.72 -0.02 0.17 16 15 C 0.06 0.94 6.61 37.20 0.25 1.19 16 16 O -0.37 -6.01 9.70 -42.64 -0.41 -6.42 16 17 C 0.09 1.37 0.71 -90.55 -0.06 1.30 16 18 C -0.11 -1.39 5.04 -26.58 -0.13 -1.52 16 19 C -0.15 -1.67 5.98 -26.58 -0.16 -1.83 16 20 C 0.06 0.65 6.84 37.20 0.25 0.91 16 21 O -0.38 -5.29 10.70 -42.64 -0.46 -5.75 16 22 C 0.05 0.65 5.16 37.17 0.19 0.84 16 23 C 0.03 0.50 4.01 -3.75 -0.02 0.49 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 26 H 0.07 1.32 7.08 -51.93 -0.37 0.95 16 27 H 0.01 0.35 6.30 -51.93 -0.33 0.02 16 28 H 0.02 0.59 6.76 -51.93 -0.35 0.24 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.05 1.07 6.56 -51.93 -0.34 0.73 16 31 H 0.08 1.35 6.20 -51.93 -0.32 1.03 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.80 6.45 -51.93 -0.33 0.46 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.00 7.83 -51.93 -0.41 0.59 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 1.58 6.09 -51.93 -0.32 1.27 16 41 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.13 6.42 -51.93 -0.33 0.80 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -30.05 319.61 -8.47 -38.52 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.17 Total: 0.77 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.02 Total: -12.10 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.20 Total: -36.21 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.87 Total: -12.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.05 -8.47 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411725343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.172 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds