Wall clock time and date at job start Mon Mar 30 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46812 * 2 1 4 4 C 1.53004 * 109.46850 * 120.00162 * 2 1 3 5 5 C 1.50703 * 109.46847 * 294.42969 * 4 2 1 6 6 H 1.08001 * 120.00117 * 355.59853 * 5 4 2 7 7 C 1.37878 * 119.99763 * 175.59370 * 5 4 2 8 8 N 1.31512 * 120.00120 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99890 * 180.27522 * 7 5 4 10 10 H 1.48497 * 109.47319 * 269.72972 * 9 7 5 11 11 H 1.48500 * 109.47021 * 29.72908 * 9 7 5 12 12 H 1.48508 * 109.46860 * 149.72812 * 9 7 5 13 13 N 1.46897 * 109.47141 * 239.99793 * 2 1 3 14 14 C 1.47010 * 111.00202 * 299.25035 * 13 2 1 15 15 C 1.53091 * 109.29914 * 177.60999 * 14 13 2 16 16 O 1.43037 * 109.24757 * 56.86426 * 15 14 13 17 17 C 1.42933 * 113.71425 * 301.42957 * 16 15 14 18 18 C 1.53093 * 109.50661 * 178.66078 * 17 16 15 19 19 C 1.53198 * 109.02988 * 63.10038 * 18 17 16 20 20 C 1.53087 * 109.16053 * 56.87054 * 19 18 17 21 21 O 1.42909 * 109.45012 * 302.38376 * 20 19 18 22 22 C 1.42918 * 114.07794 * 61.17776 * 21 20 19 23 23 C 1.47032 * 110.99891 * 175.62589 * 13 2 1 24 24 H 1.09000 * 109.47108 * 59.99917 * 1 2 3 25 25 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47427 * 300.00306 * 1 2 3 27 27 H 1.09001 * 109.46633 * 174.43548 * 4 2 1 28 28 H 1.08994 * 109.47314 * 54.43526 * 4 2 1 29 29 H 0.97000 * 120.00066 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.50100 * 297.55656 * 14 13 2 31 31 H 1.08998 * 109.50216 * 57.66659 * 14 13 2 32 32 H 1.08999 * 109.51406 * 176.79636 * 15 14 13 33 33 H 1.09003 * 109.51098 * 296.93618 * 15 14 13 34 34 H 1.09000 * 109.54459 * 182.96064 * 18 17 16 35 35 H 1.08999 * 109.54299 * 303.23561 * 18 17 16 36 36 H 1.09003 * 109.52000 * 296.97238 * 19 18 17 37 37 H 1.08993 * 109.52228 * 176.77924 * 19 18 17 38 38 H 1.09002 * 109.48086 * 182.39123 * 20 19 18 39 39 H 1.08998 * 109.47784 * 62.37937 * 20 19 18 40 40 H 1.08999 * 109.48844 * 178.94493 * 22 21 20 41 41 H 1.09011 * 109.49201 * 58.90738 * 22 21 20 42 42 H 1.09002 * 109.51152 * 302.20494 * 23 13 2 43 43 H 1.08998 * 109.51047 * 62.34993 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6533 0.0643 2.4759 6 1 1.1622 1.0205 2.3721 7 6 1.9266 -0.4378 3.7305 8 7 2.5250 -1.6021 3.8569 9 14 1.4404 0.5323 5.2510 10 1 2.5573 1.4283 5.6446 11 1 0.2342 1.3460 4.9542 12 1 1.1432 -0.4062 6.3629 13 7 2.0197 -0.6925 -1.1994 14 6 1.5631 -2.0897 -1.2244 15 6 2.0439 -2.7561 -2.5160 16 8 3.4680 -2.6510 -2.5990 17 6 3.9473 -1.3046 -2.5762 18 6 5.4771 -1.3054 -2.6359 19 6 5.9248 -1.9209 -3.9654 20 6 5.2965 -1.1355 -5.1195 21 8 3.8737 -1.1503 -4.9862 22 6 3.3944 -0.5445 -3.7837 23 6 3.4857 -0.6221 -1.2868 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1254 -0.8084 1.2008 28 1 1.5976 -1.7161 1.3005 29 1 2.7176 -1.9552 4.7396 30 1 1.9729 -2.6219 -0.3660 31 1 0.4742 -2.1174 -1.1843 32 1 1.7562 -3.8074 -2.5123 33 1 1.5916 -2.2573 -3.3733 34 1 5.8453 -0.2819 -2.5656 35 1 5.8739 -1.8948 -1.8093 36 1 5.6003 -2.9605 -4.0131 37 1 7.0110 -1.8735 -4.0413 38 1 5.5774 -1.5949 -6.0673 39 1 5.6531 -0.1058 -5.0950 40 1 2.3051 -0.5798 -3.7679 41 1 3.7251 0.4934 -3.7425 42 1 3.8003 0.4215 -1.2947 43 1 3.9264 -1.1294 -0.4286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411725343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:18 Heat of formation + Delta-G solvation = -113.875841 kcal Electronic energy + Delta-G solvation = -22461.152101 eV Core-core repulsion = 19312.198916 eV Total energy + Delta-G solvation = -3148.953185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68196 -39.32451 -37.55450 -34.96834 -34.59078 -32.83179 -32.07593 -29.37953 -29.05532 -26.27397 -26.04812 -25.29198 -24.36466 -22.47195 -20.75655 -20.11094 -18.64245 -17.70000 -17.38467 -16.91114 -16.61169 -16.54314 -16.01104 -15.74371 -15.55191 -15.26784 -14.98733 -14.40281 -14.27635 -14.03049 -13.75618 -13.52936 -13.36151 -12.95145 -12.92222 -12.78963 -12.74133 -12.37402 -12.21184 -12.05298 -12.02926 -11.69792 -11.56636 -11.47240 -11.28058 -11.12245 -10.72452 -10.56507 -10.10497 -9.17623 -8.21727 -6.32669 1.37728 1.38384 1.49576 2.37976 2.69470 2.92764 3.04693 3.11437 3.71291 3.76301 3.79764 4.04246 4.07377 4.15211 4.20503 4.32309 4.41511 4.45293 4.53877 4.55158 4.60074 4.67746 4.71417 4.73867 4.84243 4.87842 4.95707 5.01341 5.05095 5.08997 5.19424 5.23694 5.35348 5.39843 5.47380 5.53884 5.70904 5.97662 6.09484 6.17448 6.31201 6.38933 6.84175 7.36387 8.89573 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031351 B = 0.004770 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.903274 B = 5868.713656 C = 6146.121451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.010 3.990 5 C -0.529 4.529 6 H 0.065 0.935 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.260 1.260 12 H -0.285 1.285 13 N -0.518 5.518 14 C 0.014 3.986 15 C 0.067 3.933 16 O -0.384 6.384 17 C 0.092 3.908 18 C -0.112 4.112 19 C -0.144 4.144 20 C 0.054 3.946 21 O -0.394 6.394 22 C 0.055 3.945 23 C 0.032 3.968 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.053 0.947 27 H -0.019 1.019 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.013 0.987 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 1.913 -17.002 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.028 4.028 5 C -0.567 4.567 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.184 1.184 12 H -0.211 1.211 13 N -0.242 5.242 14 C -0.114 4.114 15 C -0.009 4.009 16 O -0.303 6.303 17 C 0.052 3.948 18 C -0.150 4.150 19 C -0.181 4.181 20 C -0.022 4.022 21 O -0.313 6.313 22 C -0.022 4.022 23 C -0.097 4.097 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.072 0.928 27 H -0.001 1.001 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.079 1.800 -17.460 17.821 hybrid contribution 0.285 -0.136 2.560 2.579 sum 3.364 1.664 -14.900 15.366 Atomic orbital electron populations 1.21629 0.93491 1.01235 1.01466 1.21700 0.96419 0.96959 0.86993 0.91171 1.19514 0.93979 0.95237 0.94062 1.21570 1.38184 1.05271 0.91707 0.91716 1.25953 0.95133 0.95910 1.02740 1.70117 1.43446 1.19988 1.24121 0.85498 0.79079 0.78365 0.78447 1.19963 1.18356 1.21118 1.62720 1.09146 1.13632 1.38702 1.22827 1.01717 0.89242 0.97642 1.22749 0.80864 1.01605 0.95696 1.87963 1.22039 1.26024 1.94301 1.22169 0.95636 0.83077 0.93878 1.21637 0.91343 1.02816 0.99207 1.22078 1.01834 1.00341 0.93882 1.22794 0.80141 1.00152 0.99102 1.87919 1.22667 1.81139 1.39567 1.22968 1.00493 0.95624 0.83107 1.22670 0.89116 1.01391 0.96547 0.91133 0.93675 0.92753 1.00062 0.99080 0.93003 0.96845 0.88698 0.87363 0.91052 0.88687 0.92115 0.92119 0.88618 0.87341 0.91783 0.88045 0.91231 0.89293 0.96402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 8.80 71.98 0.63 -3.73 16 2 C 0.09 3.54 2.38 44.92 0.11 3.64 16 3 H 0.07 2.85 8.13 -2.39 -0.02 2.83 16 4 C 0.01 0.54 3.69 29.85 0.11 0.65 16 5 C -0.53 -29.49 8.33 25.60 0.21 -29.27 16 6 H 0.06 3.43 7.26 -2.91 -0.02 3.41 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.52 -18.25 4.14 -870.12 -3.61 -21.86 16 14 C 0.01 0.49 4.86 86.31 0.42 0.91 16 15 C 0.07 1.98 6.61 72.01 0.48 2.46 16 16 O -0.38 -12.58 9.70 -141.90 -1.38 -13.95 16 17 C 0.09 2.69 0.71 -10.75 -0.01 2.68 16 18 C -0.11 -2.77 5.04 30.69 0.15 -2.61 16 19 C -0.14 -2.92 5.98 30.69 0.18 -2.73 16 20 C 0.05 1.02 6.84 72.01 0.49 1.52 16 21 O -0.39 -10.06 10.70 -141.90 -1.52 -11.58 16 22 C 0.05 1.41 5.16 71.99 0.37 1.78 16 23 C 0.03 1.09 4.01 86.28 0.35 1.43 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.04 1.62 6.37 -2.39 -0.02 1.61 16 26 H 0.05 2.09 7.08 -2.39 -0.02 2.07 16 27 H -0.02 -1.09 6.30 -2.39 -0.02 -1.11 16 28 H -0.01 -0.53 6.76 -2.39 -0.02 -0.55 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.01 0.57 6.56 -2.39 -0.02 0.55 16 31 H 0.09 3.05 6.20 -2.39 -0.01 3.03 16 32 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 1.91 6.45 -2.39 -0.02 1.89 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.46 7.83 -2.39 -0.02 1.44 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 2.73 6.09 -2.39 -0.01 2.72 16 41 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.02 0.75 6.42 -2.39 -0.02 0.74 16 Total: -1.00 -66.49 319.61 0.75 -65.74 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.98 Total: 15.59 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.96 Total: -22.81 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.32 Total: -79.14 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -2.90 Total: -25.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.49 0.75 -65.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411725343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.133 kcal (2) G-P(sol) polarization free energy of solvation -66.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds