Wall clock time and date at job start Mon Mar 30 2020 05:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50698 * 109.46961 * 120.00549 * 2 1 3 5 5 H 1.07993 * 120.00441 * 116.02358 * 4 2 1 6 6 C 1.37882 * 119.99566 * 296.01622 * 4 2 1 7 7 N 1.31512 * 120.00407 * 356.69006 * 6 4 2 8 8 Si 1.86804 * 119.99561 * 176.68625 * 6 4 2 9 9 H 1.48499 * 109.47139 * 265.02293 * 8 6 4 10 10 H 1.48504 * 109.46860 * 145.02722 * 8 6 4 11 11 H 1.48495 * 109.47208 * 25.02828 * 8 6 4 12 12 N 1.46504 * 109.46936 * 240.00320 * 2 1 3 13 13 C 1.34775 * 119.99904 * 85.00050 * 12 2 1 14 14 O 1.21273 * 120.00302 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99629 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.43892 * 331.12894 * 15 13 12 17 17 C 1.54812 * 110.48532 * 208.58677 * 15 13 12 18 18 C 1.55235 * 101.98768 * 220.51758 * 17 15 13 19 19 C 1.53001 * 110.51523 * 278.38364 * 18 17 15 20 20 C 1.52993 * 110.77832 * 155.50098 * 18 17 15 21 21 O 1.44376 * 103.56306 * 36.87826 * 18 17 15 22 22 C 1.43747 * 106.97611 * 320.01458 * 21 18 17 23 23 C 1.53006 * 109.87798 * 267.08679 * 22 21 18 24 24 C 1.53002 * 109.87922 * 145.94020 * 22 21 18 25 25 H 1.09004 * 109.47281 * 177.67322 * 1 2 3 26 26 H 1.08996 * 109.47548 * 297.67646 * 1 2 3 27 27 H 1.09003 * 109.47576 * 57.67613 * 1 2 3 28 28 H 0.96995 * 120.00165 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99605 * 265.00195 * 12 2 1 30 30 H 1.08997 * 110.90707 * 338.63392 * 17 15 13 31 31 H 1.08998 * 110.90884 * 102.24239 * 17 15 13 32 32 H 1.09004 * 109.46373 * 162.72594 * 19 18 17 33 33 H 1.08995 * 109.47399 * 282.72572 * 19 18 17 34 34 H 1.09000 * 109.47280 * 42.72772 * 19 18 17 35 35 H 1.08998 * 109.47026 * 304.28933 * 20 18 17 36 36 H 1.09003 * 109.47431 * 64.28774 * 20 18 17 37 37 H 1.09004 * 109.46795 * 184.29382 * 20 18 17 38 38 H 1.08997 * 109.47071 * 183.60883 * 23 22 21 39 39 H 1.09001 * 109.47295 * 303.61288 * 23 22 21 40 40 H 1.09003 * 109.46588 * 63.61044 * 23 22 21 41 41 H 1.09005 * 109.46966 * 305.15563 * 24 22 21 42 42 H 1.09001 * 109.47250 * 65.15460 * 24 22 21 43 43 H 1.08996 * 109.46991 * 185.15014 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5991 -1.6245 1.1326 6 6 1.7682 -0.1935 2.4810 7 7 1.1347 0.9530 2.5984 8 14 2.3103 -1.1217 4.0088 9 1 1.1870 -1.9564 4.5055 10 1 2.7098 -0.1528 5.0609 11 1 3.4649 -1.9937 3.6747 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7287 -3.5878 16 1 3.3120 -1.5480 -3.3104 17 6 3.3766 0.2634 -4.5273 18 6 2.8833 -0.1958 -5.9257 19 6 3.6952 -1.3978 -6.4126 20 6 2.9654 0.9518 -6.9340 21 8 1.5087 -0.5712 -5.6934 22 6 1.4677 -1.2518 -4.4279 23 6 1.6101 -2.7599 -4.6434 24 6 0.1479 -0.9476 -3.7161 25 1 -0.3634 -1.0268 -0.0417 26 1 -0.3634 0.4773 0.9100 27 1 -0.3634 0.5495 -0.8684 28 1 0.9486 1.3165 3.4782 29 1 2.2490 -1.6318 -1.1527 30 1 3.0685 1.2889 -4.3240 31 1 4.4581 0.1591 -4.4405 32 1 3.1601 -1.8933 -7.2228 33 1 4.6664 -1.0585 -6.7727 34 1 3.8373 -2.0979 -5.5894 35 1 2.4027 1.8065 -6.5584 36 1 4.0078 1.2371 -7.0758 37 1 2.5440 0.6296 -7.8863 38 1 1.5140 -3.2742 -3.6872 39 1 0.8300 -3.1053 -5.3218 40 1 2.5879 -2.9745 -5.0747 41 1 0.0211 0.1318 -3.6315 42 1 -0.6791 -1.3667 -4.2892 43 1 0.1614 -1.3910 -2.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528311968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:30 Heat of formation + Delta-G solvation = -99.044417 kcal Electronic energy + Delta-G solvation = -22323.943889 eV Core-core repulsion = 19175.633843 eV Total energy + Delta-G solvation = -3148.310046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78535 -38.29001 -34.78145 -34.17006 -32.60534 -32.14836 -29.93339 -28.76045 -28.00343 -26.63618 -25.24039 -24.12635 -21.56936 -20.27167 -19.96183 -19.13619 -17.04362 -16.15157 -15.74686 -15.39561 -15.14759 -14.87939 -14.30562 -13.94328 -13.78744 -13.19532 -12.99769 -12.85021 -12.73722 -12.38307 -12.23701 -12.05556 -11.95187 -11.77888 -11.76317 -11.49170 -11.10551 -11.07075 -10.97497 -10.74832 -10.70863 -10.56995 -10.39468 -10.31653 -10.28026 -9.61748 -9.07205 -8.91878 -8.55063 -7.90328 -6.13920 -4.21820 3.23359 3.30072 3.31580 3.33189 3.78180 4.05014 4.36687 4.58143 4.77150 4.87561 4.98483 5.01183 5.09738 5.19817 5.29957 5.40471 5.48047 5.52209 5.64358 5.68912 5.71118 5.81350 5.84714 5.95081 6.00196 6.07263 6.17136 6.19189 6.26529 6.36049 6.53654 6.78614 6.93288 7.12162 7.13139 7.45151 7.55100 7.68230 7.88290 8.09409 8.67209 8.78751 9.13516 9.45549 10.93652 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.004627 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.871358 B = 6049.958291 C = 6094.434209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.264 3.736 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.709 5.709 13 C 0.517 3.483 14 O -0.550 6.550 15 C -0.139 4.139 16 H 0.094 0.906 17 C -0.130 4.130 18 C 0.097 3.903 19 C -0.170 4.170 20 C -0.137 4.137 21 O -0.355 6.355 22 C 0.120 3.880 23 C -0.171 4.171 24 C -0.156 4.156 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.018 0.982 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -6.330 -15.612 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.302 3.698 14 O -0.428 6.428 15 C -0.161 4.161 16 H 0.113 0.887 17 C -0.168 4.168 18 C 0.058 3.942 19 C -0.227 4.227 20 C -0.194 4.194 21 O -0.275 6.275 22 C 0.080 3.920 23 C -0.228 4.228 24 C -0.213 4.213 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.219 0.781 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.301 -5.300 -15.597 16.801 hybrid contribution 0.543 -1.097 1.133 1.668 sum 3.844 -6.398 -14.464 16.276 Atomic orbital electron populations 1.22023 0.98700 0.98638 1.00772 1.18733 0.90757 0.94247 0.80050 0.93071 1.21209 1.35708 1.09884 0.90440 0.92137 1.24892 0.94942 0.94783 0.99036 1.69945 1.40352 1.17692 1.24001 0.86467 0.78839 0.79529 0.82459 1.20591 1.21086 1.19851 1.46575 1.65152 1.13393 1.10526 1.19916 0.78361 0.87321 0.84202 1.90641 1.51302 1.16088 1.84815 1.22812 0.98166 0.99504 0.95665 0.88738 1.23203 0.99988 1.01147 0.92467 1.22494 0.82612 0.94133 0.95003 1.22458 1.00035 0.98283 1.01921 1.21727 1.02136 0.97262 0.98305 1.88930 1.25697 1.76080 1.36788 1.21807 0.95003 0.91692 0.83463 1.22538 1.02818 0.94833 1.02615 1.22108 0.95164 1.03933 1.00098 0.95443 0.90187 0.96312 0.92590 0.78079 0.88399 0.90318 0.91756 0.91719 0.91588 0.91516 0.91299 0.92034 0.91396 0.91722 0.91490 0.90755 0.92198 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.33 37.16 0.35 -3.14 16 2 C 0.26 6.64 2.46 -69.08 -0.17 6.47 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.53 -14.02 8.69 -34.44 -0.30 -14.32 16 5 H 0.06 1.52 7.72 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 7 N -0.88 -24.95 11.76 55.43 0.65 -24.30 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.71 -14.49 4.53 -54.93 -0.25 -14.74 16 13 C 0.52 10.20 4.74 -10.99 -0.05 10.15 16 14 O -0.55 -13.06 14.71 5.56 0.08 -12.98 16 15 C -0.14 -2.10 2.56 -90.25 -0.23 -2.33 16 16 H 0.09 1.21 7.70 -51.93 -0.40 0.81 16 17 C -0.13 -1.83 5.58 -24.59 -0.14 -1.96 16 18 C 0.10 1.20 1.25 -89.44 -0.11 1.09 16 19 C -0.17 -1.66 7.92 37.16 0.29 -1.37 16 20 C -0.14 -1.48 8.98 37.15 0.33 -1.15 16 21 O -0.36 -5.30 10.36 -35.23 -0.36 -5.67 16 22 C 0.12 1.72 1.14 -90.05 -0.10 1.62 16 23 C -0.17 -1.94 8.32 37.16 0.31 -1.63 16 24 C -0.16 -2.48 7.72 37.16 0.29 -2.20 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 2.13 6.47 -51.93 -0.34 1.80 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 6.86 8.53 -40.82 -0.35 6.51 16 30 H 0.10 1.62 6.82 -51.93 -0.35 1.27 16 31 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.63 5.25 -51.93 -0.27 0.36 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.67 4.99 -51.93 -0.26 0.41 16 41 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.27 7.03 -51.93 -0.37 0.90 16 LS Contribution 333.09 15.07 5.02 5.02 Total: -1.00 -30.38 333.09 -6.79 -37.17 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.28 Total: 7.04 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 0.37 Total: -7.07 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.40 Total: -39.04 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.38 -6.79 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528311968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.871 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds