Wall clock time and date at job start Mon Mar 30 2020 05:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47188 * 2 1 4 4 C 1.50698 * 109.46961 * 120.00549 * 2 1 3 5 5 H 1.07993 * 120.00441 * 116.02358 * 4 2 1 6 6 C 1.37882 * 119.99566 * 296.01622 * 4 2 1 7 7 N 1.31512 * 120.00407 * 356.69006 * 6 4 2 8 8 Si 1.86804 * 119.99561 * 176.68625 * 6 4 2 9 9 H 1.48499 * 109.47139 * 265.02293 * 8 6 4 10 10 H 1.48504 * 109.46860 * 145.02722 * 8 6 4 11 11 H 1.48495 * 109.47208 * 25.02828 * 8 6 4 12 12 N 1.46504 * 109.46936 * 240.00320 * 2 1 3 13 13 C 1.34775 * 119.99904 * 85.00050 * 12 2 1 14 14 O 1.21273 * 120.00302 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99629 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.43892 * 331.12894 * 15 13 12 17 17 C 1.54812 * 110.48532 * 208.58677 * 15 13 12 18 18 C 1.55235 * 101.98768 * 220.51758 * 17 15 13 19 19 C 1.53001 * 110.51523 * 278.38364 * 18 17 15 20 20 C 1.52993 * 110.77832 * 155.50098 * 18 17 15 21 21 O 1.44376 * 103.56306 * 36.87826 * 18 17 15 22 22 C 1.43747 * 106.97611 * 320.01458 * 21 18 17 23 23 C 1.53006 * 109.87798 * 267.08679 * 22 21 18 24 24 C 1.53002 * 109.87922 * 145.94020 * 22 21 18 25 25 H 1.09004 * 109.47281 * 177.67322 * 1 2 3 26 26 H 1.08996 * 109.47548 * 297.67646 * 1 2 3 27 27 H 1.09003 * 109.47576 * 57.67613 * 1 2 3 28 28 H 0.96995 * 120.00165 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99605 * 265.00195 * 12 2 1 30 30 H 1.08997 * 110.90707 * 338.63392 * 17 15 13 31 31 H 1.08998 * 110.90884 * 102.24239 * 17 15 13 32 32 H 1.09004 * 109.46373 * 162.72594 * 19 18 17 33 33 H 1.08995 * 109.47399 * 282.72572 * 19 18 17 34 34 H 1.09000 * 109.47280 * 42.72772 * 19 18 17 35 35 H 1.08998 * 109.47026 * 304.28933 * 20 18 17 36 36 H 1.09003 * 109.47431 * 64.28774 * 20 18 17 37 37 H 1.09004 * 109.46795 * 184.29382 * 20 18 17 38 38 H 1.08997 * 109.47071 * 183.60883 * 23 22 21 39 39 H 1.09001 * 109.47295 * 303.61288 * 23 22 21 40 40 H 1.09003 * 109.46588 * 63.61044 * 23 22 21 41 41 H 1.09005 * 109.46966 * 305.15563 * 24 22 21 42 42 H 1.09001 * 109.47250 * 65.15460 * 24 22 21 43 43 H 1.08996 * 109.46991 * 185.15014 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5991 -1.6245 1.1326 6 6 1.7682 -0.1935 2.4810 7 7 1.1347 0.9530 2.5984 8 14 2.3103 -1.1217 4.0088 9 1 1.1870 -1.9564 4.5055 10 1 2.7098 -0.1528 5.0609 11 1 3.4649 -1.9937 3.6747 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0181 -2.3572 14 8 1.8582 1.1584 -2.4117 15 6 2.6488 -0.7287 -3.5878 16 1 3.3120 -1.5480 -3.3104 17 6 3.3766 0.2634 -4.5273 18 6 2.8833 -0.1958 -5.9257 19 6 3.6952 -1.3978 -6.4126 20 6 2.9654 0.9518 -6.9340 21 8 1.5087 -0.5712 -5.6934 22 6 1.4677 -1.2518 -4.4279 23 6 1.6101 -2.7599 -4.6434 24 6 0.1479 -0.9476 -3.7161 25 1 -0.3634 -1.0268 -0.0417 26 1 -0.3634 0.4773 0.9100 27 1 -0.3634 0.5495 -0.8684 28 1 0.9486 1.3165 3.4782 29 1 2.2490 -1.6318 -1.1527 30 1 3.0685 1.2889 -4.3240 31 1 4.4581 0.1591 -4.4405 32 1 3.1601 -1.8933 -7.2228 33 1 4.6664 -1.0585 -6.7727 34 1 3.8373 -2.0979 -5.5894 35 1 2.4027 1.8065 -6.5584 36 1 4.0078 1.2371 -7.0758 37 1 2.5440 0.6296 -7.8863 38 1 1.5140 -3.2742 -3.6872 39 1 0.8300 -3.1053 -5.3218 40 1 2.5879 -2.9745 -5.0747 41 1 0.0211 0.1318 -3.6315 42 1 -0.6791 -1.3667 -4.2892 43 1 0.1614 -1.3910 -2.7205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528311968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:29 Heat of formation + Delta-G solvation = -119.187259 kcal Electronic energy + Delta-G solvation = -22324.817348 eV Core-core repulsion = 19175.633843 eV Total energy + Delta-G solvation = -3149.183506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01538 -39.82176 -36.69473 -35.24113 -34.27452 -33.58326 -31.23570 -30.40517 -28.98294 -27.57645 -27.29199 -25.44857 -23.11839 -21.67009 -21.22782 -20.65219 -18.73198 -17.66298 -17.27872 -16.78276 -16.55709 -16.07174 -15.87997 -15.41439 -15.08044 -14.47494 -14.42217 -14.10752 -13.95901 -13.77551 -13.67109 -13.11545 -13.04939 -13.00979 -12.97267 -12.89371 -12.76736 -12.73913 -12.55576 -12.32664 -12.15056 -12.11749 -11.82102 -11.62858 -11.36081 -11.11610 -10.76401 -10.61678 -10.46732 -9.73935 -8.18965 -6.35101 1.45061 1.45203 1.56368 1.76424 2.34258 2.57639 2.76569 3.13165 3.44892 3.66451 3.81726 3.91610 4.05221 4.09836 4.21694 4.37741 4.38352 4.52223 4.70346 4.73026 4.74616 4.77046 4.85419 4.88144 4.90256 4.93696 5.02693 5.06006 5.08906 5.16904 5.21403 5.31158 5.34553 5.43096 5.47583 5.61055 5.65048 5.90381 6.05795 6.10647 6.73946 6.96940 7.32602 7.56518 8.89276 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.004627 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.871358 B = 6049.958291 C = 6094.434209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.703 5.703 13 C 0.515 3.485 14 O -0.597 6.597 15 C -0.133 4.133 16 H 0.128 0.872 17 C -0.133 4.133 18 C 0.094 3.906 19 C -0.164 4.164 20 C -0.138 4.138 21 O -0.377 6.377 22 C 0.121 3.879 23 C -0.165 4.165 24 C -0.154 4.154 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.011 0.989 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.442 -9.424 -16.634 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.168 3.832 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.351 5.351 13 C 0.303 3.697 14 O -0.479 6.479 15 C -0.154 4.154 16 H 0.146 0.854 17 C -0.171 4.171 18 C 0.056 3.944 19 C -0.221 4.221 20 C -0.195 4.195 21 O -0.297 6.297 22 C 0.081 3.919 23 C -0.222 4.222 24 C -0.211 4.211 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.989 -8.435 -16.649 19.319 hybrid contribution -0.006 -0.028 1.405 1.405 sum 4.983 -8.463 -15.244 18.134 Atomic orbital electron populations 1.21825 0.98447 0.99242 0.99094 1.18308 0.90901 0.91959 0.82044 0.98536 1.21546 1.35668 1.10258 0.90776 0.90652 1.25822 0.94901 0.95477 1.02432 1.70104 1.41633 1.19432 1.24710 0.85337 0.78835 0.78116 0.78077 1.19833 1.21432 1.18436 1.46308 1.65193 1.14059 1.09585 1.20759 0.77025 0.86828 0.85118 1.90624 1.53079 1.18581 1.85622 1.22870 0.99184 1.00184 0.93185 0.85371 1.23246 1.01365 0.98938 0.93585 1.22728 0.81717 0.95836 0.94150 1.22421 1.00468 0.96916 1.02317 1.21776 1.03397 0.96082 0.98247 1.88910 1.27608 1.76524 1.36668 1.21866 0.93175 0.93788 0.83029 1.22504 1.04275 0.91788 1.03590 1.22067 0.97426 1.01177 1.00473 0.93557 0.92728 0.96971 0.92634 0.76059 0.91964 0.87821 0.91104 0.89658 0.90881 0.93743 0.88996 0.90993 0.90347 0.91123 0.89469 0.94735 0.90672 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.33 71.98 0.67 -5.76 16 2 C 0.27 14.08 2.46 44.24 0.11 14.18 16 3 H 0.00 -0.21 7.58 -2.39 -0.02 -0.22 16 4 C -0.54 -28.56 8.69 25.60 0.22 -28.34 16 5 H 0.08 3.65 7.72 -2.91 -0.02 3.63 16 6 C 0.01 0.73 5.27 84.66 0.45 1.18 16 7 N -0.92 -53.46 11.76 21.45 0.25 -53.21 16 8 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 12 N -0.70 -28.80 4.53 -446.10 -2.02 -30.82 16 13 C 0.52 20.69 4.74 87.66 0.42 21.11 16 14 O -0.60 -30.07 14.71 -3.01 -0.04 -30.12 16 15 C -0.13 -3.79 2.56 -10.55 -0.03 -3.82 16 16 H 0.13 2.80 7.70 -2.39 -0.02 2.78 16 17 C -0.13 -3.60 5.58 31.98 0.18 -3.42 16 18 C 0.09 2.14 1.25 -10.03 -0.01 2.13 16 19 C -0.16 -2.54 7.92 71.98 0.57 -1.97 16 20 C -0.14 -2.78 8.98 71.98 0.65 -2.14 16 21 O -0.38 -10.78 10.36 -148.98 -1.54 -12.32 16 22 C 0.12 3.27 1.14 -10.42 -0.01 3.26 16 23 C -0.16 -3.14 8.32 71.98 0.60 -2.54 16 24 C -0.15 -4.93 7.72 71.98 0.56 -4.37 16 25 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.05 3.02 6.47 -2.39 -0.02 3.01 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.40 13.68 8.53 -92.71 -0.79 12.89 16 30 H 0.06 2.14 6.82 -2.39 -0.02 2.13 16 31 H 0.10 2.22 8.05 -2.39 -0.02 2.20 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.07 1.03 5.25 -2.39 -0.01 1.02 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.33 4.99 -2.39 -0.01 1.32 16 41 H 0.03 1.35 7.11 -2.38 -0.02 1.34 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 2.31 7.03 -2.39 -0.02 2.30 16 Total: -1.00 -69.46 333.09 3.23 -66.23 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.20 Total: 26.94 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.36 Total: -10.50 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.77 Total: -84.03 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.59 Total: -42.44 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -69.46 3.23 -66.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528311968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.959 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds