Wall clock time and date at job start Mon Mar 30 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46932 * 2 1 4 4 O 1.42902 * 109.47392 * 119.99827 * 2 1 3 5 5 C 1.52998 * 109.47049 * 240.00228 * 2 1 3 6 6 C 1.53009 * 109.47073 * 174.53945 * 5 2 1 7 7 H 1.08990 * 109.99720 * 54.46909 * 6 5 2 8 8 C 1.54321 * 109.87857 * 293.37494 * 6 5 2 9 9 C 1.55153 * 102.94420 * 218.39038 * 8 6 5 10 10 C 1.54698 * 101.67606 * 35.33554 * 9 8 6 11 11 N 1.47017 * 109.88023 * 175.56961 * 6 5 2 12 12 C 1.34774 * 125.65021 * 298.31602 * 11 6 5 13 13 O 1.21281 * 119.99998 * 354.94117 * 12 11 6 14 14 C 1.50698 * 120.00411 * 174.94020 * 12 11 6 15 15 C 1.52993 * 109.47432 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47197 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.47257 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99570 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99993 * 179.97438 * 17 16 15 20 20 N 1.31523 * 120.00093 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00289 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47689 * 89.99581 * 21 19 17 23 23 H 1.48499 * 109.47237 * 209.99623 * 21 19 17 24 24 H 1.48497 * 109.47109 * 329.99401 * 21 19 17 25 25 H 1.09001 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46921 * 299.99605 * 1 2 3 27 27 H 1.08999 * 109.47155 * 60.00200 * 1 2 3 28 28 H 0.96706 * 113.99089 * 60.00075 * 4 2 1 29 29 H 1.09000 * 109.47403 * 54.53601 * 5 2 1 30 30 H 1.08998 * 109.47025 * 294.53534 * 5 2 1 31 31 H 1.09007 * 110.72378 * 336.75444 * 8 6 5 32 32 H 1.09005 * 110.72329 * 100.02543 * 8 6 5 33 33 H 1.08998 * 111.00829 * 153.57848 * 9 8 6 34 34 H 1.09004 * 111.00751 * 277.43282 * 9 8 6 35 35 H 1.08996 * 110.39328 * 204.36740 * 10 9 8 36 36 H 1.08997 * 110.23113 * 82.11069 * 10 9 8 37 37 H 1.09004 * 109.47059 * 59.99742 * 14 12 11 38 38 H 1.09004 * 109.46943 * 300.00124 * 14 12 11 39 39 H 1.09000 * 109.47423 * 300.00463 * 15 14 12 40 40 H 1.09004 * 109.47169 * 59.99859 * 15 14 12 41 41 H 1.08995 * 109.47223 * 300.00000 * 16 15 14 42 42 H 1.09003 * 109.46748 * 60.00509 * 16 15 14 43 43 H 0.96997 * 120.00200 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5639 -0.6034 -1.3198 7 1 4.0090 -0.9663 -0.3935 8 6 3.9662 0.8679 -1.5543 9 6 5.1680 0.7486 -2.5282 10 6 4.7515 -0.4651 -3.3923 11 7 4.0733 -1.3820 -2.4581 12 6 3.9466 -2.7142 -2.6181 13 8 3.4529 -3.3865 -1.7377 14 6 4.4183 -3.3685 -3.8911 15 6 4.1612 -4.8748 -3.8159 16 6 4.6396 -5.5390 -5.1086 17 6 4.3869 -7.0228 -5.0343 18 1 3.9304 -7.4493 -4.1534 19 6 4.7375 -7.8355 -6.0913 20 7 4.5175 -9.1306 -6.0263 21 14 5.5264 -7.0977 -7.6152 22 1 7.0027 -7.0900 -7.4542 23 1 5.1624 -7.9101 -8.8038 24 1 5.0414 -5.7063 -7.7993 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -1.5952 1.2328 29 1 1.5990 -0.2670 -2.1365 30 1 1.7587 -1.7732 -1.2017 31 1 3.1491 1.4223 -2.0162 32 1 4.2724 1.3377 -0.6196 33 1 5.2688 1.6474 -3.1365 34 1 6.0907 0.5399 -1.9866 35 1 5.6306 -0.9443 -3.8231 36 1 4.0662 -0.1501 -4.1792 37 1 5.4858 -3.1883 -4.0182 38 1 3.8756 -2.9487 -4.7381 39 1 4.7042 -5.2943 -2.9689 40 1 3.0938 -5.0553 -3.6885 41 1 4.0962 -5.1195 -5.9552 42 1 5.7069 -5.3585 -5.2363 43 1 4.7639 -9.7024 -6.7701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594325322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:57 Heat of formation + Delta-G solvation = -113.883638 kcal Electronic energy + Delta-G solvation = -20996.148167 eV Core-core repulsion = 17847.194644 eV Total energy + Delta-G solvation = -3148.953523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31931 -38.15935 -37.11049 -34.30711 -32.67892 -32.03426 -31.57377 -29.97725 -28.23944 -25.97126 -24.26926 -22.53641 -22.18002 -20.90724 -19.95932 -18.81331 -17.04626 -16.89004 -16.60141 -16.05914 -15.86811 -15.28153 -14.68816 -14.27588 -14.07781 -13.81958 -13.50110 -13.47930 -13.09501 -12.84174 -12.62428 -12.32371 -12.20305 -11.97514 -11.89246 -11.58595 -11.48524 -11.16245 -10.96888 -10.94754 -10.83325 -10.75999 -10.28404 -9.97435 -9.80405 -9.68332 -9.36907 -9.11480 -8.60976 -8.50051 -5.99766 -3.97471 2.86100 2.99868 3.32060 3.39072 3.42057 4.14364 4.25984 4.31831 4.47895 4.55516 4.67674 4.78897 4.90096 5.03594 5.07091 5.12694 5.22514 5.33473 5.38617 5.44379 5.47253 5.54038 5.56177 5.59009 5.61635 5.65996 5.82615 5.83995 6.01799 6.06942 6.11741 6.40106 6.57757 6.71511 6.93570 7.38177 7.45690 7.47029 7.58663 7.83780 8.38861 8.60430 9.06992 9.62306 11.13977 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.003685 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.257076 B = 7596.079425 C = 8311.682196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.097 0.903 4 O -0.565 6.565 5 C -0.163 4.163 6 C 0.140 3.860 7 H 0.081 0.919 8 C -0.129 4.129 9 C -0.134 4.134 10 C 0.099 3.901 11 N -0.625 5.625 12 C 0.529 3.471 13 O -0.533 6.533 14 C -0.137 4.137 15 C -0.087 4.087 16 C -0.014 4.014 17 C -0.518 4.518 18 H 0.072 0.928 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.379 0.621 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 25.400 7.875 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.046 3.954 3 H 0.115 0.885 4 O -0.371 6.371 5 C -0.202 4.202 6 C 0.037 3.963 7 H 0.099 0.901 8 C -0.167 4.167 9 C -0.172 4.172 10 C -0.024 4.024 11 N -0.361 5.361 12 C 0.319 3.681 13 O -0.408 6.408 14 C -0.177 4.177 15 C -0.125 4.125 16 C -0.051 4.051 17 C -0.556 4.556 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.544 5.544 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.227 0.773 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.664 25.332 8.340 26.802 hybrid contribution 0.142 -0.224 -1.169 1.199 sum -2.521 25.108 7.171 26.233 Atomic orbital electron populations 1.22503 0.96487 1.02815 1.02521 1.21847 0.92720 0.96435 0.84357 0.88537 1.86529 1.77339 1.29514 1.43705 1.22689 0.95855 1.02952 0.98696 1.21451 0.93596 0.90686 0.90560 0.90105 1.22741 0.98294 0.95326 1.00313 1.22746 0.98533 0.97913 0.97983 1.22261 0.97159 0.90359 0.92645 1.48743 1.57608 1.06556 1.23229 1.20860 0.78033 0.79597 0.89582 1.90673 1.44518 1.62002 1.43643 1.21863 1.02258 0.99385 0.94170 1.21270 1.01842 0.89263 1.00129 1.19603 0.95631 0.96804 0.93097 1.21164 1.40461 0.90179 1.03810 0.90941 1.25053 0.95457 0.94716 0.98441 1.69927 1.48519 1.03770 1.32186 0.86757 0.79890 0.79592 0.82886 1.20343 1.21444 1.19068 0.92114 0.91845 0.91675 0.77329 0.91068 0.90029 0.90620 0.90055 0.89844 0.90550 0.90300 0.91454 0.89587 0.89528 0.92098 0.92136 0.96701 0.97127 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 9.53 37.16 0.35 -1.07 16 2 C 0.11 0.93 3.50 -26.73 -0.09 0.84 16 3 H 0.10 0.75 7.30 -51.93 -0.38 0.37 16 4 O -0.56 -5.94 12.83 -35.23 -0.45 -6.40 16 5 C -0.16 -1.69 4.35 -26.73 -0.12 -1.81 16 6 C 0.14 1.53 2.82 -66.95 -0.19 1.34 16 7 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 8 C -0.13 -0.96 5.50 -24.90 -0.14 -1.10 16 9 C -0.13 -0.93 7.07 -24.70 -0.17 -1.10 16 10 C 0.10 0.89 6.64 -2.64 -0.02 0.87 16 11 N -0.63 -7.81 3.07 -163.16 -0.50 -8.31 16 12 C 0.53 8.62 7.57 -10.99 -0.08 8.53 16 13 O -0.53 -10.58 15.16 5.56 0.08 -10.50 16 14 C -0.14 -2.22 4.80 -27.89 -0.13 -2.35 16 15 C -0.09 -1.84 4.44 -26.73 -0.12 -1.96 16 16 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 17 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 18 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 19 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 21 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.38 3.31 9.05 45.56 0.41 3.72 16 29 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16 30 H 0.08 1.08 6.90 -51.93 -0.36 0.72 16 31 H 0.08 0.48 7.78 -51.93 -0.40 0.08 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.68 7.51 -51.93 -0.39 0.29 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.25 7.76 -51.93 -0.40 0.84 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -34.55 343.10 -7.76 -42.32 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.92 Total: 0.32 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.25 Total: -12.05 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.27 Total: -36.08 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.37 Total: -16.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.55 -7.76 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594325322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.567 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds