Wall clock time and date at job start Mon Mar 30 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46932 * 2 1 4 4 O 1.42902 * 109.47392 * 119.99827 * 2 1 3 5 5 C 1.52998 * 109.47049 * 240.00228 * 2 1 3 6 6 C 1.53009 * 109.47073 * 174.53945 * 5 2 1 7 7 H 1.08990 * 109.99720 * 54.46909 * 6 5 2 8 8 C 1.54321 * 109.87857 * 293.37494 * 6 5 2 9 9 C 1.55153 * 102.94420 * 218.39038 * 8 6 5 10 10 C 1.54698 * 101.67606 * 35.33554 * 9 8 6 11 11 N 1.47017 * 109.88023 * 175.56961 * 6 5 2 12 12 C 1.34774 * 125.65021 * 298.31602 * 11 6 5 13 13 O 1.21281 * 119.99998 * 354.94117 * 12 11 6 14 14 C 1.50698 * 120.00411 * 174.94020 * 12 11 6 15 15 C 1.52993 * 109.47432 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47197 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.47257 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99570 * 0.02562 * 17 16 15 19 19 C 1.37868 * 119.99993 * 179.97438 * 17 16 15 20 20 N 1.31523 * 120.00093 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00289 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47689 * 89.99581 * 21 19 17 23 23 H 1.48499 * 109.47237 * 209.99623 * 21 19 17 24 24 H 1.48497 * 109.47109 * 329.99401 * 21 19 17 25 25 H 1.09001 * 109.46932 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46921 * 299.99605 * 1 2 3 27 27 H 1.08999 * 109.47155 * 60.00200 * 1 2 3 28 28 H 0.96706 * 113.99089 * 60.00075 * 4 2 1 29 29 H 1.09000 * 109.47403 * 54.53601 * 5 2 1 30 30 H 1.08998 * 109.47025 * 294.53534 * 5 2 1 31 31 H 1.09007 * 110.72378 * 336.75444 * 8 6 5 32 32 H 1.09005 * 110.72329 * 100.02543 * 8 6 5 33 33 H 1.08998 * 111.00829 * 153.57848 * 9 8 6 34 34 H 1.09004 * 111.00751 * 277.43282 * 9 8 6 35 35 H 1.08996 * 110.39328 * 204.36740 * 10 9 8 36 36 H 1.08997 * 110.23113 * 82.11069 * 10 9 8 37 37 H 1.09004 * 109.47059 * 59.99742 * 14 12 11 38 38 H 1.09004 * 109.46943 * 300.00124 * 14 12 11 39 39 H 1.09000 * 109.47423 * 300.00463 * 15 14 12 40 40 H 1.09004 * 109.47169 * 59.99859 * 15 14 12 41 41 H 1.08995 * 109.47223 * 300.00000 * 16 15 14 42 42 H 1.09003 * 109.46748 * 60.00509 * 16 15 14 43 43 H 0.96997 * 120.00200 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2493 6 6 3.5639 -0.6034 -1.3198 7 1 4.0090 -0.9663 -0.3935 8 6 3.9662 0.8679 -1.5543 9 6 5.1680 0.7486 -2.5282 10 6 4.7515 -0.4651 -3.3923 11 7 4.0733 -1.3820 -2.4581 12 6 3.9466 -2.7142 -2.6181 13 8 3.4529 -3.3865 -1.7377 14 6 4.4183 -3.3685 -3.8911 15 6 4.1612 -4.8748 -3.8159 16 6 4.6396 -5.5390 -5.1086 17 6 4.3869 -7.0228 -5.0343 18 1 3.9304 -7.4493 -4.1534 19 6 4.7375 -7.8355 -6.0913 20 7 4.5175 -9.1306 -6.0263 21 14 5.5264 -7.0977 -7.6152 22 1 7.0027 -7.0900 -7.4542 23 1 5.1624 -7.9101 -8.8038 24 1 5.0414 -5.7063 -7.7993 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -1.5952 1.2328 29 1 1.5990 -0.2670 -2.1365 30 1 1.7587 -1.7732 -1.2017 31 1 3.1491 1.4223 -2.0162 32 1 4.2724 1.3377 -0.6196 33 1 5.2688 1.6474 -3.1365 34 1 6.0907 0.5399 -1.9866 35 1 5.6306 -0.9443 -3.8231 36 1 4.0662 -0.1501 -4.1792 37 1 5.4858 -3.1883 -4.0182 38 1 3.8756 -2.9487 -4.7381 39 1 4.7042 -5.2943 -2.9689 40 1 3.0938 -5.0553 -3.6885 41 1 4.0962 -5.1195 -5.9552 42 1 5.7069 -5.3585 -5.2363 43 1 4.7639 -9.7024 -6.7701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594325322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:56 Heat of formation + Delta-G solvation = -138.772356 kcal Electronic energy + Delta-G solvation = -20997.227423 eV Core-core repulsion = 17847.194644 eV Total energy + Delta-G solvation = -3150.032779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.32700 -39.16191 -37.98515 -36.15542 -34.21953 -33.36676 -32.52236 -30.78688 -29.90212 -26.69142 -25.92357 -23.70432 -22.88432 -22.08970 -21.36736 -19.91479 -18.84680 -18.05301 -17.76768 -16.89281 -16.73707 -16.58876 -16.21126 -15.66553 -15.01570 -14.92593 -14.82076 -14.50953 -14.30862 -13.87173 -13.79000 -13.65773 -13.32713 -13.10750 -12.86571 -12.71597 -12.59860 -12.48940 -12.10216 -11.84108 -11.79636 -11.72915 -11.62585 -11.59735 -11.50073 -11.34364 -11.07225 -10.75832 -10.69651 -9.60897 -8.28457 -6.34414 1.37894 1.41598 1.53757 1.63172 2.00181 2.38633 3.06448 3.41139 3.48575 3.67299 3.84888 3.90884 4.01731 4.10664 4.12945 4.20964 4.25936 4.39579 4.45556 4.49680 4.64215 4.79366 4.80663 4.83903 4.87907 4.91326 4.92407 4.98981 5.01747 5.09992 5.16577 5.19302 5.27993 5.37667 5.49768 5.54520 5.57662 5.66768 6.29415 6.53079 6.71271 6.74043 7.19645 7.30028 8.89299 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.003685 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.257076 B = 7596.079425 C = 8311.682196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 H 0.115 0.885 4 O -0.582 6.582 5 C -0.155 4.155 6 C 0.133 3.867 7 H 0.052 0.948 8 C -0.120 4.120 9 C -0.125 4.125 10 C 0.087 3.913 11 N -0.620 5.620 12 C 0.522 3.478 13 O -0.585 6.585 14 C -0.125 4.125 15 C -0.079 4.079 16 C -0.007 4.007 17 C -0.541 4.541 18 H 0.018 0.982 19 C -0.003 4.003 20 N -0.957 5.957 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.236 1.236 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.382 0.618 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 29.613 5.703 30.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.049 3.951 3 H 0.132 0.868 4 O -0.389 6.389 5 C -0.194 4.194 6 C 0.030 3.970 7 H 0.070 0.930 8 C -0.158 4.158 9 C -0.163 4.163 10 C -0.035 4.035 11 N -0.354 5.354 12 C 0.313 3.687 13 O -0.465 6.465 14 C -0.165 4.165 15 C -0.117 4.117 16 C -0.045 4.045 17 C -0.579 4.579 18 H 0.037 0.963 19 C -0.199 4.199 20 N -0.598 5.598 21 Si 0.784 3.216 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.159 1.159 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.231 0.769 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.532 29.610 6.175 30.286 hybrid contribution -0.254 -1.593 -0.387 1.659 sum -1.786 28.017 5.787 28.664 Atomic orbital electron populations 1.22469 0.95548 1.02467 1.03477 1.21960 0.93456 0.96703 0.82985 0.86752 1.86497 1.77832 1.29978 1.44572 1.22608 0.95726 1.00974 1.00105 1.21611 0.93665 0.92791 0.88970 0.92977 1.22745 0.99289 0.92453 1.01301 1.22765 0.97829 0.98067 0.97653 1.22643 0.97646 0.90406 0.92776 1.48762 1.56570 1.05769 1.24253 1.20855 0.77853 0.80906 0.89108 1.90658 1.47065 1.63611 1.45189 1.21690 1.04278 0.95323 0.95159 1.21035 0.99740 0.93127 0.97832 1.19531 0.96838 0.93247 0.94857 1.21544 1.40444 0.93536 1.02352 0.96321 1.26207 0.95940 0.94997 1.02782 1.70110 1.50015 1.05845 1.33796 0.85483 0.79121 0.79944 0.77009 1.18866 1.21096 1.15869 0.93158 0.91253 0.90294 0.76938 0.89809 0.93706 0.88634 0.89129 0.86829 0.90924 0.89493 0.89546 0.86998 0.86929 0.94672 0.94587 0.95109 0.95303 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.53 71.98 0.69 -1.91 16 2 C 0.11 1.80 3.50 30.59 0.11 1.91 16 3 H 0.11 1.50 7.30 -2.39 -0.02 1.48 16 4 O -0.58 -12.43 12.83 -148.98 -1.91 -14.34 16 5 C -0.16 -3.15 4.35 30.60 0.13 -3.02 16 6 C 0.13 2.76 2.82 45.34 0.13 2.88 16 7 H 0.05 1.38 7.73 -2.39 -0.02 1.36 16 8 C -0.12 -1.39 5.50 31.78 0.17 -1.22 16 9 C -0.13 -1.22 7.07 31.91 0.23 -0.99 16 10 C 0.09 1.23 6.64 86.78 0.58 1.81 16 11 N -0.62 -14.56 3.07 -788.50 -2.42 -16.98 16 12 C 0.52 16.98 7.57 87.66 0.66 17.64 16 13 O -0.59 -24.55 15.16 -3.03 -0.05 -24.60 16 14 C -0.13 -3.84 4.80 29.85 0.14 -3.70 16 15 C -0.08 -3.42 4.44 30.59 0.14 -3.28 16 16 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 17 C -0.54 -32.97 9.66 25.60 0.25 -32.72 16 18 H 0.02 1.28 7.99 -2.91 -0.02 1.25 16 19 C 0.00 -0.20 5.47 84.65 0.46 0.26 16 20 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 21 Si 0.96 44.16 27.47 68.60 1.88 46.04 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.38 7.29 9.05 -74.05 -0.67 6.62 16 29 H 0.08 1.46 8.04 -2.39 -0.02 1.44 16 30 H 0.04 1.25 6.90 -2.39 -0.02 1.24 16 31 H 0.10 0.78 7.78 -2.38 -0.02 0.76 16 32 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 33 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.13 7.51 -2.39 -0.02 1.11 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 2.87 7.76 -2.38 -0.02 2.85 16 38 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 39 H 0.03 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 41 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 42 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 43 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -80.32 343.10 1.86 -78.46 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.25 Total: 15.94 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 3.80 Total: -22.57 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.12 Total: -78.94 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.96 Total: -38.93 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -80.32 1.86 -78.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594325322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.307 kcal (2) G-P(sol) polarization free energy of solvation -80.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds