Wall clock time and date at job start Mon Mar 30 2020 04:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47215 * 2 1 4 4 O 1.42906 * 109.47204 * 240.00234 * 2 1 3 5 5 C 1.52999 * 109.47175 * 120.00697 * 2 1 3 6 6 H 1.08993 * 109.70714 * 72.55751 * 5 2 1 7 7 C 1.53190 * 109.58380 * 312.20172 * 5 2 1 8 8 C 1.53043 * 109.33941 * 185.59703 * 7 5 2 9 9 C 1.53044 * 109.53705 * 61.34825 * 8 7 5 10 10 C 1.53189 * 109.31314 * 298.63685 * 9 8 7 11 11 N 1.46925 * 108.77645 * 54.63430 * 10 9 8 12 12 C 1.34776 * 120.62858 * 126.38837 * 11 10 9 13 13 O 1.21282 * 120.00178 * 175.01523 * 12 11 10 14 14 C 1.50697 * 120.00310 * 355.02209 * 12 11 10 15 15 C 1.52995 * 109.47560 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.47458 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47045 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00205 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99773 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99990 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47371 * 89.99557 * 21 19 17 23 23 H 1.48504 * 109.47443 * 209.99873 * 21 19 17 24 24 H 1.48501 * 109.47125 * 330.00054 * 21 19 17 25 25 H 1.08997 * 109.47549 * 305.15670 * 1 2 3 26 26 H 1.09007 * 109.47439 * 65.15719 * 1 2 3 27 27 H 1.09005 * 109.47055 * 185.15747 * 1 2 3 28 28 H 0.96703 * 113.99862 * 295.01941 * 4 2 1 29 29 H 1.08997 * 109.49926 * 65.63040 * 7 5 2 30 30 H 1.09000 * 109.49880 * 305.56063 * 7 5 2 31 31 H 1.08999 * 109.46087 * 181.36644 * 8 7 5 32 32 H 1.09000 * 109.45749 * 301.32834 * 8 7 5 33 33 H 1.09004 * 109.49604 * 58.58712 * 9 8 7 34 34 H 1.09003 * 109.49692 * 178.68002 * 9 8 7 35 35 H 1.09003 * 109.58432 * 174.42858 * 10 9 8 36 36 H 1.08999 * 109.58472 * 294.84513 * 10 9 8 37 37 H 1.09005 * 109.47295 * 299.99932 * 14 12 11 38 38 H 1.09004 * 109.46993 * 59.99512 * 14 12 11 39 39 H 1.09004 * 109.47152 * 299.99862 * 15 14 12 40 40 H 1.08995 * 109.47196 * 59.99594 * 15 14 12 41 41 H 1.09004 * 109.46602 * 299.99924 * 16 15 14 42 42 H 1.08995 * 109.47473 * 59.99489 * 16 15 14 43 43 H 0.97005 * 119.99637 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7214 1.2491 6 1 1.8725 -1.7937 1.1484 7 6 1.2970 -0.1993 2.4829 8 6 1.9061 -0.8207 3.7419 9 6 3.3766 -0.4118 3.8545 10 6 4.1432 -0.9370 2.6367 11 7 3.4763 -0.4614 1.4170 12 6 4.1689 0.2015 0.4697 13 8 3.6295 0.5096 -0.5719 14 6 5.6137 0.5597 0.7046 15 6 6.1604 1.3016 -0.5166 16 6 7.6275 1.6648 -0.2783 17 6 8.1657 2.3961 -1.4810 18 1 7.5256 2.5828 -2.3306 19 6 9.4754 2.8269 -1.4968 20 7 10.2547 2.5999 -0.4620 21 14 10.1428 3.7327 -2.9879 22 1 9.9254 5.1920 -2.8188 23 1 11.5965 3.4612 -3.1224 24 1 9.4369 3.2653 -4.2079 25 1 -0.3634 0.5917 0.8402 26 1 -0.3634 0.4318 -0.9326 27 1 -0.3633 -1.0236 0.0924 28 1 1.7852 -1.6146 -1.1956 29 1 0.2438 -0.4717 2.4157 30 1 1.3899 0.8857 2.5314 31 1 1.3633 -0.4693 4.6194 32 1 1.8347 -1.9067 3.6818 33 1 3.4503 0.6751 3.8898 34 1 3.8034 -0.8355 4.7637 35 1 5.1676 -0.5655 2.6618 36 1 4.1472 -2.0269 2.6497 37 1 5.6911 1.1997 1.5836 38 1 6.1921 -0.3501 0.8656 39 1 6.0831 0.6613 -1.3954 40 1 5.5821 2.2113 -0.6780 41 1 7.7051 2.3049 0.6005 42 1 8.2055 0.7549 -0.1172 43 1 11.1761 2.9033 -0.4730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594336045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:41 Heat of formation + Delta-G solvation = -96.160491 kcal Electronic energy + Delta-G solvation = -21661.408409 eV Core-core repulsion = 18513.223419 eV Total energy + Delta-G solvation = -3148.184990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58629 -37.48758 -36.69979 -34.11290 -33.03024 -32.28782 -31.79810 -29.17240 -27.92365 -25.36596 -24.21804 -23.48389 -21.48179 -21.03906 -19.99256 -18.86533 -16.73293 -16.38684 -16.18532 -15.98340 -15.26772 -14.88907 -14.45112 -14.26608 -14.20367 -13.81789 -13.63381 -13.46994 -13.01984 -12.72096 -12.32253 -12.17874 -12.04434 -11.71241 -11.64496 -11.31512 -11.28336 -11.10644 -10.86973 -10.77420 -10.54625 -10.48916 -10.39310 -9.74584 -9.59043 -9.31101 -9.05504 -8.70735 -8.43232 -8.27426 -5.93392 -3.94308 3.07022 3.08410 3.37993 3.43542 3.49052 4.35394 4.45698 4.53401 4.58324 4.71915 4.84815 4.94897 5.02371 5.12927 5.20706 5.24632 5.39292 5.42722 5.44748 5.51014 5.60433 5.62654 5.69724 5.76922 5.78795 5.80969 5.83469 6.00926 6.04478 6.25013 6.34402 6.68741 6.81563 7.02255 7.24215 7.61409 7.76854 7.89919 7.95401 8.07996 8.52508 8.64699 9.12923 9.69397 11.18185 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.004054 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.812171 B = 6905.641849 C = 7713.648714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.117 3.883 3 H 0.111 0.889 4 O -0.523 6.523 5 C 0.117 3.883 6 H 0.066 0.934 7 C -0.131 4.131 8 C -0.119 4.119 9 C -0.137 4.137 10 C 0.108 3.892 11 N -0.620 5.620 12 C 0.501 3.499 13 O -0.490 6.490 14 C -0.137 4.137 15 C -0.093 4.093 16 C 0.021 3.979 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.347 0.653 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.283 -9.629 10.608 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.057 3.943 3 H 0.129 0.871 4 O -0.325 6.325 5 C 0.013 3.987 6 H 0.083 0.917 7 C -0.169 4.169 8 C -0.156 4.156 9 C -0.176 4.176 10 C -0.015 4.015 11 N -0.357 5.357 12 C 0.290 3.710 13 O -0.363 6.363 14 C -0.177 4.177 15 C -0.131 4.131 16 C -0.016 4.016 17 C -0.554 4.554 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.539 5.539 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.147 -8.815 9.927 23.299 hybrid contribution 0.240 -0.166 -0.287 0.409 sum -18.907 -8.980 9.639 23.044 Atomic orbital electron populations 1.22696 0.97631 1.01813 1.02674 1.21932 0.90416 0.98703 0.83237 0.87148 1.87093 1.79641 1.23933 1.41808 1.21982 0.81314 0.99188 0.96218 0.91656 1.22012 0.99372 1.01347 0.94188 1.21509 0.95906 1.00566 0.97636 1.21945 0.95648 1.01976 0.98000 1.21707 0.97322 0.98842 0.83667 1.48203 1.08307 1.58710 1.20495 1.21263 0.89535 0.77223 0.82968 1.90831 1.69239 1.51440 1.24829 1.21863 0.91162 1.02064 1.02569 1.21429 0.98726 0.98649 0.94332 1.19128 0.89123 0.96405 0.96987 1.21288 0.96101 1.35760 1.02270 0.92588 1.25017 0.97091 0.96278 0.96135 1.69969 1.06868 1.47255 1.29761 0.86600 0.77982 0.80080 0.83404 1.20711 1.21291 1.19820 0.91735 0.91708 0.92914 0.80879 0.90684 0.91267 0.91722 0.91946 0.91272 0.90761 0.88995 0.91818 0.89848 0.89867 0.92679 0.92858 0.96744 0.96699 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 8.65 37.15 0.32 -1.47 16 2 C 0.12 1.48 2.43 -26.74 -0.06 1.42 16 3 H 0.11 1.76 6.38 -51.93 -0.33 1.43 16 4 O -0.52 -7.94 10.60 -60.53 -0.64 -8.58 16 5 C 0.12 1.26 2.78 -67.60 -0.19 1.07 16 6 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 7 C -0.13 -1.10 4.43 -26.61 -0.12 -1.22 16 8 C -0.12 -0.87 5.88 -26.69 -0.16 -1.03 16 9 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 10 C 0.11 1.07 6.35 -3.71 -0.02 1.04 16 11 N -0.62 -7.86 2.97 -165.22 -0.49 -8.35 16 12 C 0.50 8.37 7.44 -10.99 -0.08 8.29 16 13 O -0.49 -9.76 10.19 -19.74 -0.20 -9.97 16 14 C -0.14 -2.38 4.05 -27.89 -0.11 -2.49 16 15 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 17 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.06 0.52 6.79 -51.93 -0.35 0.17 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.35 3.87 8.99 45.56 0.41 4.28 16 29 H 0.07 0.52 6.81 -51.93 -0.35 0.17 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.93 5.93 -51.93 -0.31 0.62 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16 38 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 39 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 40 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -34.07 332.27 -8.64 -42.72 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.78 Total: 0.05 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -1.25 Total: -11.49 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.25 Total: -35.09 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.84 Total: -18.54 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.07 -8.64 -42.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594336045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.444 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds