Wall clock time and date at job start Mon Mar 30 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46492 * 109.46964 * 2 1 4 4 C 1.46500 * 120.00213 * 89.99985 * 3 2 1 5 5 C 1.50706 * 109.47299 * 89.99368 * 4 3 2 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.34776 * 120.00340 * 269.99855 * 3 2 1 14 14 O 1.21283 * 120.00358 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99688 * 359.97438 * 13 3 2 16 16 C 1.53004 * 109.47326 * 180.02562 * 15 13 3 17 17 H 1.08997 * 109.47056 * 54.99693 * 16 15 13 18 18 C 1.53004 * 109.46919 * 295.00316 * 16 15 13 19 19 C 1.52993 * 109.47425 * 175.00334 * 16 15 13 20 20 H 1.09010 * 110.27612 * 60.63406 * 19 16 15 21 21 C 1.54941 * 110.31413 * 182.83147 * 19 16 15 22 22 C 1.55301 * 100.94500 * 155.35577 * 21 19 16 23 23 C 1.54381 * 102.25569 * 325.87159 * 22 21 19 24 24 O 1.43243 * 107.58333 * 21.35354 * 23 22 21 25 25 H 1.09008 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47416 * 299.99790 * 1 2 3 27 27 H 1.09004 * 109.47270 * 59.99907 * 1 2 3 28 28 H 1.09003 * 109.47173 * 239.99641 * 2 1 3 29 29 H 1.08998 * 109.46859 * 120.00090 * 2 1 3 30 30 H 1.09004 * 109.47078 * 330.00130 * 4 3 2 31 31 H 1.08993 * 109.47364 * 209.99901 * 4 3 2 32 32 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 33 33 H 1.08999 * 109.47673 * 300.00630 * 15 13 3 34 34 H 1.09002 * 109.47028 * 60.00354 * 15 13 3 35 35 H 1.08992 * 109.47012 * 179.97438 * 18 16 15 36 36 H 1.09004 * 109.47309 * 299.99886 * 18 16 15 37 37 H 1.08999 * 109.47077 * 59.99595 * 18 16 15 38 38 H 1.08993 * 111.12914 * 273.28161 * 21 19 16 39 39 H 1.09001 * 111.12024 * 37.43935 * 21 19 16 40 40 H 1.08995 * 110.84904 * 207.67649 * 22 21 19 41 41 H 1.09009 * 111.01818 * 84.14078 * 22 21 19 42 42 H 1.08997 * 109.82962 * 261.84127 * 23 22 21 43 43 H 1.08994 * 109.83145 * 140.86476 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2687 5 6 3.6857 1.8350 1.7039 6 1 4.3427 1.2308 1.0959 7 6 4.1490 2.3895 2.8780 8 7 3.3505 3.1297 3.6156 9 14 5.9134 2.0965 3.4170 10 1 5.9762 0.8789 4.2648 11 1 6.7724 1.9111 2.2199 12 1 6.3943 3.2666 4.1948 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9924 1.3059 -2.4723 16 6 2.3243 2.2431 -3.6352 17 1 3.3459 2.6076 -3.5280 18 6 1.3566 3.4283 -3.6273 19 6 2.1897 1.4838 -4.9566 20 1 1.1689 1.1228 -5.0826 21 6 2.5905 2.3951 -6.1439 22 6 3.0063 1.3361 -7.2011 23 6 3.6253 0.2251 -6.3261 24 8 3.1152 0.3861 -4.9973 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5816 1.6877 2.0284 31 1 2.0955 3.1410 1.1384 32 1 2.4343 3.2821 3.3357 33 1 2.6228 0.4187 -2.5298 34 1 0.9445 1.0114 -2.5302 35 1 1.5933 4.0961 -4.4555 36 1 0.3349 3.0639 -3.7345 37 1 1.4524 3.9692 -2.6859 38 1 1.7417 2.9843 -6.4908 39 1 3.4305 3.0375 -5.8798 40 1 3.7458 1.7450 -7.8895 41 1 2.1376 0.9636 -7.7440 42 1 4.7110 0.3213 -6.3196 43 1 3.3419 -0.7529 -6.7150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596890874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:14 Heat of formation + Delta-G solvation = -105.023075 kcal Electronic energy + Delta-G solvation = -21594.070969 eV Core-core repulsion = 18445.501668 eV Total energy + Delta-G solvation = -3148.569300 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90842 -38.92907 -35.57587 -34.46273 -32.99971 -32.21919 -30.01077 -28.90846 -27.68472 -26.02038 -23.49939 -23.00015 -22.37771 -21.66544 -20.11746 -18.34585 -16.90838 -16.81474 -16.49882 -15.65411 -15.36215 -15.20538 -14.64101 -13.78473 -13.69162 -13.46645 -13.42556 -13.27804 -13.06895 -12.42018 -12.26663 -12.16277 -11.96547 -11.79095 -11.50045 -11.45674 -11.27540 -11.15463 -10.99433 -10.77507 -10.68180 -10.58965 -10.54799 -10.37060 -10.07903 -9.53649 -9.07373 -8.77807 -8.33549 -7.54707 -6.33604 -4.04937 3.44425 3.48345 3.51890 3.66846 3.70623 3.93181 4.33371 4.56678 4.60313 4.71519 4.96101 5.02183 5.06834 5.28958 5.30868 5.35915 5.41448 5.48102 5.54037 5.54934 5.61215 5.66603 5.67798 5.76071 5.82759 5.86675 5.94146 6.03768 6.07393 6.21274 6.24840 6.47890 6.51361 6.59919 6.89586 7.00149 7.19794 7.50983 8.10614 8.39819 8.50908 8.83705 9.13386 9.64843 11.03686 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.004557 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.891995 B = 6142.847764 C = 6524.139298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.236 3.764 5 C -0.603 4.603 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 1.074 2.926 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.543 6.543 15 C -0.132 4.132 16 C -0.071 4.071 17 H 0.084 0.916 18 C -0.150 4.150 19 C 0.085 3.915 20 H 0.069 0.931 21 C -0.150 4.150 22 C -0.157 4.157 23 C 0.050 3.950 24 O -0.378 6.378 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.019 0.981 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -6.467 -19.480 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.116 3.884 5 C -0.642 4.642 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.548 5.548 9 Si 0.902 3.098 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.421 6.421 15 C -0.172 4.172 16 C -0.090 4.090 17 H 0.102 0.898 18 C -0.207 4.207 19 C 0.028 3.972 20 H 0.087 0.913 21 C -0.187 4.187 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.297 6.297 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.900 -5.641 -18.086 19.342 hybrid contribution -1.189 -0.470 -1.426 1.915 sum -5.089 -6.110 -19.512 21.070 Atomic orbital electron populations 1.22215 0.96895 1.01409 1.02122 1.21403 0.93371 0.84182 1.02786 1.48063 1.63961 1.13224 1.07431 1.19288 0.96756 0.93043 0.79277 1.22296 0.97035 1.35514 1.09389 0.93071 1.25798 1.05833 0.93495 0.93387 1.70772 1.07938 1.36283 1.39830 0.83476 0.74339 0.76382 0.75592 1.21473 1.21532 1.20906 1.20396 0.78076 0.86905 0.85203 1.90610 1.45959 1.18285 1.87225 1.21707 1.02814 0.99882 0.92823 1.21002 1.01946 0.94695 0.91382 0.89755 1.21926 0.97543 0.97453 1.03819 1.23091 0.92902 0.86036 0.95147 0.91328 1.23299 1.02442 0.98129 0.94860 1.23124 1.01446 0.96396 0.98516 1.23083 0.98557 0.98184 0.82804 1.88442 1.61421 1.51624 1.28237 0.92122 0.92331 0.93025 0.91391 0.90197 0.96309 0.94998 0.92256 0.88862 0.89970 0.93026 0.93504 0.89697 0.89916 0.90029 0.90211 0.90730 0.91476 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.11 1.82 5.93 -4.05 -0.02 1.79 16 3 N -0.60 -13.06 2.46 -175.06 -0.43 -13.49 16 4 C 0.24 6.31 4.47 -5.19 -0.02 6.29 16 5 C -0.60 -17.77 9.39 -34.44 -0.32 -18.09 16 6 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 8 N -0.91 -28.34 13.65 55.43 0.76 -27.58 16 9 Si 1.07 26.28 29.90 -169.99 -5.08 21.20 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.51 10.85 7.39 -10.99 -0.08 10.76 16 14 O -0.54 -13.69 13.55 5.56 0.08 -13.61 16 15 C -0.13 -2.12 3.67 -27.88 -0.10 -2.22 16 16 C -0.07 -1.04 1.80 -90.62 -0.16 -1.21 16 17 H 0.08 1.44 7.95 -51.93 -0.41 1.03 16 18 C -0.15 -2.09 8.74 37.16 0.32 -1.77 16 19 C 0.09 1.02 2.96 -25.71 -0.08 0.94 16 20 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 21 C -0.15 -1.44 5.55 -24.49 -0.14 -1.57 16 22 C -0.16 -1.26 7.02 -24.79 -0.17 -1.44 16 23 C 0.05 0.50 7.80 37.88 0.30 0.79 16 24 O -0.38 -5.03 10.39 -35.23 -0.37 -5.39 16 25 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.68 7.22 -51.93 -0.38 0.31 16 28 H 0.07 1.01 6.44 -51.93 -0.33 0.67 16 29 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 30 H 0.02 0.50 7.94 -51.93 -0.41 0.09 16 31 H 0.03 0.95 7.28 -51.93 -0.38 0.57 16 32 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 33 H 0.09 1.49 6.88 -51.93 -0.36 1.13 16 34 H 0.08 1.13 7.19 -51.93 -0.37 0.76 16 35 H 0.05 0.61 7.28 -51.93 -0.38 0.23 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 38 H 0.08 0.67 8.05 -51.93 -0.42 0.26 16 39 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -34.16 340.17 -7.59 -41.75 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.47 Total: -0.76 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.20 Total: -7.23 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.33 Total: -41.08 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.29 Total: -19.01 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.08 Total: 21.20 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.16 -7.59 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596890874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.275 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds