Wall clock time and date at job start Mon Mar 30 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46876 * 2 1 4 4 C 1.50697 * 109.46783 * 239.99613 * 2 1 3 5 5 H 1.08005 * 120.00334 * 239.99922 * 4 2 1 6 6 C 1.37880 * 119.99815 * 60.00208 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 C 1.50706 * 109.46925 * 119.99873 * 2 1 3 13 13 O 1.21282 * 119.99865 * 120.00227 * 12 2 1 14 14 N 1.34774 * 120.00164 * 299.99732 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 C 1.52992 * 109.47337 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47482 * 300.00145 * 16 15 14 18 18 C 1.52999 * 109.46961 * 60.00506 * 16 15 14 19 19 C 1.53005 * 109.47159 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46733 * 299.99162 * 19 18 16 21 21 C 1.53002 * 109.46965 * 60.00506 * 20 19 18 22 22 C 1.52997 * 109.47092 * 299.99543 * 21 20 19 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 O 1.42900 * 109.47084 * 300.00350 * 22 21 20 25 25 H 1.09004 * 109.47059 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46930 * 300.00226 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00140 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47062 * 59.99678 * 15 14 12 31 31 H 1.08996 * 109.46956 * 300.00500 * 15 14 12 32 32 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 33 33 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 34 34 H 1.09004 * 109.47261 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.46716 * 299.99630 * 18 16 15 36 36 H 1.09000 * 109.47486 * 59.99547 * 18 16 15 37 37 H 1.08992 * 109.47061 * 59.99386 * 19 18 16 38 38 H 1.09001 * 109.46812 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.46976 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47380 * 300.00211 * 20 19 18 41 41 H 1.09000 * 109.47312 * 59.99663 * 21 20 19 42 42 H 1.09002 * 109.47067 * 179.97438 * 21 20 19 43 43 H 0.96700 * 113.99855 * 299.99597 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6991 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6033 8 14 2.3223 -1.1198 -4.0079 9 1 3.1482 -2.2859 -3.6037 10 1 1.1676 -1.5868 -4.8164 11 1 3.1471 -0.1861 -4.8161 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 6 1.6860 -0.2186 4.9000 17 6 2.1959 1.2239 4.8994 18 6 0.1560 -0.2187 4.9005 19 6 -0.3536 0.5035 6.1495 20 6 0.1568 -0.2169 7.3990 21 6 1.6868 -0.2168 7.3985 22 6 2.1964 -0.9389 6.1496 23 1 3.2864 -0.9393 6.1494 24 8 1.7200 -2.2862 6.1507 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 0.7080 1.1607 -3.4843 29 1 1.1494 0.5390 2.5436 30 1 3.2855 -0.9398 3.6506 31 1 1.8326 -1.9679 3.6510 32 1 1.8323 1.7375 4.0094 33 1 3.2859 1.2239 4.8990 34 1 1.8325 1.7381 5.7892 35 1 -0.2077 0.2949 4.0105 36 1 -0.2073 -1.2463 4.9009 37 1 0.0097 1.5311 6.1486 38 1 -1.4436 0.5038 6.1496 39 1 -0.2066 0.2973 8.2888 40 1 -0.2066 -1.2446 7.3998 41 1 2.0501 0.8108 7.3976 42 1 2.0504 -0.7297 8.2889 43 1 2.0057 -2.8037 6.9160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597342816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:02 Heat of formation + Delta-G solvation = -139.459857 kcal Electronic energy + Delta-G solvation = -21847.315519 eV Core-core repulsion = 18697.252928 eV Total energy + Delta-G solvation = -3150.062591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33537 -40.10927 -36.65403 -35.78820 -35.51017 -33.16173 -32.01173 -30.95295 -27.83564 -27.22227 -26.67316 -24.33374 -23.46857 -22.03813 -21.05573 -19.35999 -18.37648 -17.98110 -17.78547 -16.90398 -16.54173 -16.22929 -16.01058 -15.68359 -15.32120 -14.86382 -14.61198 -14.28533 -14.03330 -13.71534 -13.51330 -13.39397 -13.14992 -12.97138 -12.73117 -12.69310 -12.59596 -12.43036 -12.30912 -12.20062 -12.02807 -11.88980 -11.58227 -11.09353 -11.04184 -10.89153 -10.60315 -10.54871 -10.28740 -9.92631 -8.15345 -6.25561 1.39018 1.40659 1.54665 1.94533 2.36717 2.55545 3.13922 3.29996 3.60856 3.78455 3.89876 4.13425 4.20667 4.31791 4.35202 4.41614 4.51893 4.62720 4.66234 4.73191 4.76484 4.84505 4.90264 4.93238 4.98302 5.03246 5.07266 5.13746 5.22552 5.28097 5.32311 5.40199 5.46283 5.49471 5.62387 5.66417 5.75122 5.93670 6.21316 6.74607 6.86606 6.98700 7.40096 7.56050 8.90773 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038660 B = 0.004121 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.084491 B = 6792.986848 C = 7111.170678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.592 6.592 14 N -0.720 5.720 15 C 0.137 3.863 16 C -0.054 4.054 17 C -0.146 4.146 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.144 4.144 22 C 0.116 3.884 23 H 0.058 0.942 24 O -0.579 6.579 25 H 0.020 0.980 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 2.984 23.098 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.782 3.218 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.472 6.472 14 N -0.374 5.374 15 C 0.013 3.987 16 C -0.055 4.055 17 C -0.203 4.203 18 C -0.143 4.143 19 C -0.155 4.155 20 C -0.150 4.150 21 C -0.182 4.182 22 C 0.057 3.943 23 H 0.076 0.924 24 O -0.387 6.387 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.712 2.594 22.343 22.558 hybrid contribution 0.417 -0.526 -0.671 0.950 sum -1.294 2.067 21.672 21.808 Atomic orbital electron populations 1.21543 0.95074 0.99277 1.01676 1.18813 0.95315 0.95945 0.89642 0.93978 1.21313 1.31568 1.12675 0.91218 0.93577 1.25595 0.95180 0.95759 1.01380 1.69950 1.37192 1.23575 1.24259 0.85537 0.78374 0.78568 0.79360 1.20630 1.19830 1.19776 1.21604 0.78260 0.83701 0.85763 1.90500 1.40224 1.28844 1.87638 1.46046 1.54183 1.32356 1.04823 1.21229 0.97637 0.95732 0.84101 1.20713 0.96699 0.95917 0.92152 1.22004 1.01420 0.93497 1.03381 1.21492 0.93338 1.00692 0.98731 1.21576 1.00444 0.99720 0.93742 1.21427 0.95186 1.00772 0.97657 1.22236 0.96668 1.02192 0.97100 1.21715 0.96584 0.82053 0.93942 0.92411 1.86540 1.77838 1.23752 1.50577 0.96095 0.93127 0.90902 0.92564 0.75583 0.93593 0.93818 0.92355 0.92211 0.89270 0.92600 0.93088 0.90554 0.91776 0.90782 0.92497 0.89646 0.90083 0.76070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.87 71.98 0.64 -4.92 16 2 C 0.02 1.26 2.64 -12.28 -0.03 1.22 16 3 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.53 -31.72 8.37 25.60 0.21 -31.51 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.86 11.32 21.45 0.24 -51.62 16 8 Si 0.96 45.92 29.54 68.60 2.03 47.95 16 9 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.52 25.22 7.15 87.66 0.63 25.85 16 13 O -0.59 -33.73 15.46 -3.04 -0.05 -33.78 16 14 N -0.72 -26.27 4.85 -463.08 -2.25 -28.52 16 15 C 0.14 4.43 4.42 86.38 0.38 4.81 16 16 C -0.05 -1.20 0.36 -52.18 -0.02 -1.22 16 17 C -0.15 -2.66 7.61 71.98 0.55 -2.12 16 18 C -0.10 -2.31 4.41 30.60 0.13 -2.17 16 19 C -0.12 -1.87 5.65 30.59 0.17 -1.70 16 20 C -0.11 -1.54 5.78 30.59 0.18 -1.36 16 21 C -0.14 -1.76 5.36 30.59 0.16 -1.60 16 22 C 0.12 2.09 2.74 30.60 0.08 2.17 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 O -0.58 -11.74 11.30 -148.98 -1.68 -13.42 16 25 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 1.93 7.57 -2.38 -0.02 1.91 16 27 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.41 12.61 5.58 -92.70 -0.52 12.09 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 32 H 0.06 1.15 6.86 -2.39 -0.02 1.13 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.19 4.81 -2.38 -0.01 1.18 16 35 H 0.06 1.29 6.86 -2.39 -0.02 1.28 16 36 H 0.05 1.35 7.68 -2.39 -0.02 1.33 16 37 H 0.08 1.04 6.43 -2.39 -0.02 1.02 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.06 0.91 7.68 -2.39 -0.02 0.90 16 41 H 0.09 0.89 6.43 -2.39 -0.02 0.88 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.39 4.47 9.08 -74.06 -0.67 3.80 16 Total: -1.00 -72.23 325.36 1.65 -70.57 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.18 Total: 19.76 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 3.54 Total: -10.95 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.00 Total: -80.14 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.73 Total: -47.20 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.23 1.65 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597342816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.885 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds