Wall clock time and date at job start Mon Mar 30 2020 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99734 * 2 1 4 4 C 1.52999 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.32769 * 305.34199 * 4 3 2 6 6 C 1.47091 * 109.33344 * 64.99837 * 4 3 2 7 7 C 1.52568 * 114.33086 * 183.06714 * 6 4 3 8 8 C 1.50881 * 109.35351 * 274.98306 * 7 6 4 9 9 C 1.53940 * 110.09829 * 91.88533 * 8 7 6 10 10 N 1.47610 * 112.14048 * 319.43539 * 9 8 7 11 11 C 1.34784 * 118.64085 * 137.86722 * 10 9 8 12 12 O 1.21283 * 119.99649 * 179.97438 * 11 10 9 13 13 C 1.50697 * 119.99774 * 359.72726 * 11 10 9 14 14 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 15 15 C 1.52998 * 109.47737 * 59.99989 * 13 11 10 16 16 C 1.50700 * 109.46617 * 180.02562 * 13 11 10 17 17 H 1.07996 * 120.00295 * 359.97438 * 16 13 11 18 18 C 1.37888 * 119.99812 * 179.97438 * 16 13 11 19 19 N 1.31512 * 119.99790 * 179.97438 * 18 16 13 20 20 Si 1.86799 * 119.99752 * 359.97438 * 18 16 13 21 21 H 1.48510 * 109.47091 * 90.00165 * 20 18 16 22 22 H 1.48505 * 109.46915 * 209.99414 * 20 18 16 23 23 H 1.48494 * 109.47340 * 329.99806 * 20 18 16 24 24 C 1.44575 * 122.71660 * 318.14343 * 10 9 8 25 25 H 1.09002 * 109.47185 * 60.00134 * 1 2 3 26 26 H 1.09004 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47544 * 300.00010 * 1 2 3 28 28 H 1.09001 * 109.47351 * 59.99766 * 3 2 1 29 29 H 1.08999 * 109.46987 * 299.99676 * 3 2 1 30 30 H 1.08999 * 108.51029 * 61.81014 * 6 4 3 31 31 H 1.09005 * 108.38574 * 304.23334 * 6 4 3 32 32 H 1.08999 * 109.49093 * 155.01652 * 7 6 4 33 33 H 1.09004 * 109.48959 * 34.94194 * 7 6 4 34 34 H 1.09002 * 109.36684 * 331.68761 * 8 7 6 35 35 H 1.08997 * 109.36167 * 212.07832 * 8 7 6 36 36 H 1.09003 * 108.94810 * 198.75163 * 9 8 7 37 37 H 1.08999 * 108.94928 * 80.11751 * 9 8 7 38 38 H 1.09006 * 109.46641 * 299.99898 * 15 13 11 39 39 H 1.08998 * 109.46893 * 59.99480 * 15 13 11 40 40 H 1.08994 * 109.47310 * 179.97438 * 15 13 11 41 41 H 0.97001 * 119.99371 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.44918 * 210.48810 * 24 10 9 43 43 H 1.09005 * 109.44654 * 330.40822 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8484 0.5630 0.8382 6 6 3.9740 0.5618 -1.2588 7 6 5.4775 0.3185 -1.3491 8 6 6.1581 1.5718 -1.8415 9 6 6.5938 2.4409 -0.6480 10 7 5.5757 2.4694 0.4204 11 6 5.9817 2.3761 1.7023 12 8 5.1661 2.3974 2.5997 13 6 7.4484 2.2395 2.0201 14 1 7.8385 1.3348 1.5538 15 6 8.2026 3.4569 1.4814 16 6 7.6329 2.1541 3.5133 17 1 6.7740 2.1950 4.1668 18 6 8.8983 2.0236 4.0453 19 7 9.0594 1.9495 5.3484 20 14 10.3838 1.9522 2.9149 21 1 10.8938 3.3270 2.6802 22 1 11.4475 1.1308 3.5467 23 1 9.9911 1.3420 1.6193 24 6 4.1607 2.5876 0.1485 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.6775 1.2066 -2.0861 31 1 3.4616 -0.3944 -1.3660 32 1 5.6726 -0.4984 -2.0439 33 1 5.8636 0.0582 -0.3635 34 1 5.4667 2.1367 -2.4668 35 1 7.0345 1.2998 -2.4297 36 1 6.7695 3.4586 -0.9967 37 1 7.5231 2.0426 -0.2407 38 1 8.0690 3.5182 0.4013 39 1 7.8124 4.3615 1.9477 40 1 9.2633 3.3583 1.7117 41 1 9.9496 1.8581 5.7225 42 1 3.6752 3.1106 0.9724 43 1 4.0141 3.1493 -0.7742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597516390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:36 Heat of formation + Delta-G solvation = -78.459202 kcal Electronic energy + Delta-G solvation = -22182.888420 eV Core-core repulsion = 19035.471015 eV Total energy + Delta-G solvation = -3147.417404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13583 -38.21247 -36.83465 -34.40466 -33.37270 -32.78761 -31.11567 -28.01469 -26.78146 -25.59847 -25.10111 -24.07832 -22.43286 -20.65719 -20.22563 -18.34309 -16.86380 -16.67250 -16.01553 -15.91219 -15.78973 -15.16879 -14.76047 -14.36106 -14.09760 -13.91243 -13.66204 -13.11720 -13.07538 -12.79994 -12.41746 -12.22094 -12.00573 -11.74939 -11.58716 -11.34018 -11.23323 -10.94955 -10.79224 -10.53596 -10.50891 -10.42929 -10.25471 -10.19197 -9.70793 -9.57781 -9.05972 -8.63068 -8.54712 -8.14472 -6.02253 -4.01926 3.24640 3.31329 3.37520 3.39127 3.60327 3.85958 4.40066 4.65197 4.87957 4.95975 5.03132 5.08923 5.19857 5.22539 5.27100 5.34616 5.37107 5.38539 5.51429 5.62669 5.69668 5.71646 5.79111 5.85140 5.96552 6.04039 6.13554 6.15205 6.26220 6.32169 6.36511 6.41514 6.47414 6.51047 6.71418 7.08763 7.18346 7.20102 7.57302 7.99583 8.57421 9.10771 9.18293 9.57004 11.10872 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.005427 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.554008 B = 5158.014303 C = 5752.854374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.070 3.930 4 C -0.103 4.103 5 H 0.085 0.915 6 C -0.106 4.106 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.106 3.894 10 N -0.619 5.619 11 C 0.526 3.474 12 O -0.527 6.527 13 C -0.004 4.004 14 H 0.051 0.949 15 C -0.158 4.158 16 C -0.503 4.503 17 H 0.093 0.907 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.884 3.116 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.128 3.872 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.264 0.736 42 H 0.080 0.920 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -0.461 -17.966 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.007 4.007 4 C -0.123 4.123 5 H 0.103 0.897 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.171 4.171 9 C -0.017 4.017 10 N -0.354 5.354 11 C 0.316 3.684 12 O -0.401 6.401 13 C -0.026 4.026 14 H 0.068 0.932 15 C -0.215 4.215 16 C -0.542 4.542 17 H 0.111 0.889 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.714 3.286 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.004 3.996 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.518 -0.618 -17.317 20.270 hybrid contribution 0.701 0.215 -0.595 0.944 sum -9.817 -0.403 -17.912 20.430 Atomic orbital electron populations 1.22710 0.81423 1.02521 0.99798 1.87888 1.19308 1.28198 1.95367 1.22507 0.93657 0.84463 1.00031 1.20727 0.92595 0.98931 1.00040 0.89695 1.20421 0.95944 1.01113 0.96898 1.21051 0.95240 0.97084 1.02121 1.21822 1.00982 0.96819 0.97446 1.22200 0.92045 0.99364 0.88101 1.47827 1.05476 1.75391 1.06710 1.21365 0.92697 0.73732 0.80624 1.90575 1.55808 1.48167 1.45581 1.19283 0.87932 0.95522 0.99828 0.93159 1.22425 1.00215 1.00078 0.98769 1.20949 0.95156 1.49849 0.88206 0.88937 1.24985 0.98473 0.94810 0.94887 1.69886 1.22719 1.50272 1.10615 0.86918 0.82989 0.77594 0.81066 1.20533 1.22352 1.19283 1.21023 0.82342 0.94887 1.01346 0.94366 0.89836 0.94092 0.92907 0.93541 0.92866 0.91803 0.92102 0.91162 0.91889 0.90953 0.92161 0.88848 0.93626 0.92478 0.93414 0.92619 0.90120 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.13 10.03 -35.23 -0.35 -5.48 16 3 C 0.07 0.87 5.28 37.16 0.20 1.06 16 4 C -0.10 -1.44 2.32 -92.77 -0.21 -1.66 16 5 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 6 C -0.11 -1.29 4.37 -29.79 -0.13 -1.42 16 7 C -0.12 -1.43 5.51 -28.02 -0.15 -1.59 16 8 C -0.13 -1.44 5.71 -27.30 -0.16 -1.60 16 9 C 0.11 1.43 4.44 -2.94 -0.01 1.42 16 10 N -0.62 -10.38 2.25 -172.89 -0.39 -10.77 16 11 C 0.53 11.64 7.02 -10.98 -0.08 11.57 16 12 O -0.53 -13.69 14.89 5.56 0.08 -13.61 16 13 C 0.00 -0.10 1.40 -92.93 -0.13 -0.23 16 14 H 0.05 1.16 6.48 -51.93 -0.34 0.82 16 15 C -0.16 -3.24 8.18 37.16 0.30 -2.94 16 16 C -0.50 -14.70 8.96 -34.44 -0.31 -15.00 16 17 H 0.09 3.09 7.00 -52.49 -0.37 2.72 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 19 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.41 24.37 -169.99 -4.14 17.27 16 21 H -0.28 -6.51 6.87 56.52 0.39 -6.13 16 22 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.27 -5.98 6.53 56.52 0.37 -5.61 16 24 C 0.13 1.86 4.66 -4.38 -0.02 1.84 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 31 H 0.06 0.81 7.51 -51.93 -0.39 0.42 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 34 H 0.06 0.61 7.32 -51.93 -0.38 0.23 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.72 7.57 -51.93 -0.39 0.33 16 37 H 0.09 1.39 4.85 -51.93 -0.25 1.13 16 38 H 0.05 0.75 4.58 -51.93 -0.24 0.51 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.08 1.30 7.21 -51.93 -0.37 0.93 16 43 H 0.07 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -33.58 320.52 -5.96 -39.54 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.07 Total: 0.60 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.31 Total: -5.18 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.38 Total: -37.96 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.27 Total: -19.10 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.58 -5.96 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597516390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.914 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds