Wall clock time and date at job start Mon Mar 30 2020 04:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99734 * 2 1 4 4 C 1.52999 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.32769 * 305.34199 * 4 3 2 6 6 C 1.47091 * 109.33344 * 64.99837 * 4 3 2 7 7 C 1.52568 * 114.33086 * 183.06714 * 6 4 3 8 8 C 1.50881 * 109.35351 * 274.98306 * 7 6 4 9 9 C 1.53940 * 110.09829 * 91.88533 * 8 7 6 10 10 N 1.47610 * 112.14048 * 319.43539 * 9 8 7 11 11 C 1.34784 * 118.64085 * 137.86722 * 10 9 8 12 12 O 1.21283 * 119.99649 * 179.97438 * 11 10 9 13 13 C 1.50697 * 119.99774 * 359.72726 * 11 10 9 14 14 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 15 15 C 1.52998 * 109.47737 * 59.99989 * 13 11 10 16 16 C 1.50700 * 109.46617 * 180.02562 * 13 11 10 17 17 H 1.07996 * 120.00295 * 359.97438 * 16 13 11 18 18 C 1.37888 * 119.99812 * 179.97438 * 16 13 11 19 19 N 1.31512 * 119.99790 * 179.97438 * 18 16 13 20 20 Si 1.86799 * 119.99752 * 359.97438 * 18 16 13 21 21 H 1.48510 * 109.47091 * 90.00165 * 20 18 16 22 22 H 1.48505 * 109.46915 * 209.99414 * 20 18 16 23 23 H 1.48494 * 109.47340 * 329.99806 * 20 18 16 24 24 C 1.44575 * 122.71660 * 318.14343 * 10 9 8 25 25 H 1.09002 * 109.47185 * 60.00134 * 1 2 3 26 26 H 1.09004 * 109.47025 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47544 * 300.00010 * 1 2 3 28 28 H 1.09001 * 109.47351 * 59.99766 * 3 2 1 29 29 H 1.08999 * 109.46987 * 299.99676 * 3 2 1 30 30 H 1.08999 * 108.51029 * 61.81014 * 6 4 3 31 31 H 1.09005 * 108.38574 * 304.23334 * 6 4 3 32 32 H 1.08999 * 109.49093 * 155.01652 * 7 6 4 33 33 H 1.09004 * 109.48959 * 34.94194 * 7 6 4 34 34 H 1.09002 * 109.36684 * 331.68761 * 8 7 6 35 35 H 1.08997 * 109.36167 * 212.07832 * 8 7 6 36 36 H 1.09003 * 108.94810 * 198.75163 * 9 8 7 37 37 H 1.08999 * 108.94928 * 80.11751 * 9 8 7 38 38 H 1.09006 * 109.46641 * 299.99898 * 15 13 11 39 39 H 1.08998 * 109.46893 * 59.99480 * 15 13 11 40 40 H 1.08994 * 109.47310 * 179.97438 * 15 13 11 41 41 H 0.97001 * 119.99371 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.44918 * 210.48810 * 24 10 9 43 43 H 1.09005 * 109.44654 * 330.40822 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8484 0.5630 0.8382 6 6 3.9740 0.5618 -1.2588 7 6 5.4775 0.3185 -1.3491 8 6 6.1581 1.5718 -1.8415 9 6 6.5938 2.4409 -0.6480 10 7 5.5757 2.4694 0.4204 11 6 5.9817 2.3761 1.7023 12 8 5.1661 2.3974 2.5997 13 6 7.4484 2.2395 2.0201 14 1 7.8385 1.3348 1.5538 15 6 8.2026 3.4569 1.4814 16 6 7.6329 2.1541 3.5133 17 1 6.7740 2.1950 4.1668 18 6 8.8983 2.0236 4.0453 19 7 9.0594 1.9495 5.3484 20 14 10.3838 1.9522 2.9149 21 1 10.8938 3.3270 2.6802 22 1 11.4475 1.1308 3.5467 23 1 9.9911 1.3420 1.6193 24 6 4.1607 2.5876 0.1485 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.6775 1.2066 -2.0861 31 1 3.4616 -0.3944 -1.3660 32 1 5.6726 -0.4984 -2.0439 33 1 5.8636 0.0582 -0.3635 34 1 5.4667 2.1367 -2.4668 35 1 7.0345 1.2998 -2.4297 36 1 6.7695 3.4586 -0.9967 37 1 7.5231 2.0426 -0.2407 38 1 8.0690 3.5182 0.4013 39 1 7.8124 4.3615 1.9477 40 1 9.2633 3.3583 1.7117 41 1 9.9496 1.8581 5.7225 42 1 3.6752 3.1106 0.9724 43 1 4.0141 3.1493 -0.7742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597516390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:35 Heat of formation + Delta-G solvation = -102.760060 kcal Electronic energy + Delta-G solvation = -22183.942184 eV Core-core repulsion = 19035.471015 eV Total energy + Delta-G solvation = -3148.471169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53017 -39.40136 -38.05282 -36.11852 -34.94944 -33.93407 -33.07875 -28.99282 -27.91327 -27.25570 -26.44876 -25.27169 -24.01359 -21.92495 -21.26667 -19.81268 -18.85776 -17.82342 -17.58528 -17.13407 -16.83423 -16.65116 -16.13336 -15.76007 -15.36511 -15.15817 -14.85245 -14.64139 -14.47736 -14.19837 -13.93953 -13.50317 -13.22269 -12.99528 -12.90493 -12.77771 -12.51322 -12.31327 -12.25989 -12.10898 -11.79513 -11.57253 -11.47949 -11.34160 -11.26594 -11.10776 -10.76734 -10.62083 -10.36574 -9.52427 -8.27449 -6.35198 1.31831 1.39335 1.50555 1.83211 2.16722 2.34376 2.87888 3.06067 3.63523 3.79338 3.95336 4.04112 4.05790 4.17162 4.37651 4.38590 4.40883 4.41430 4.50661 4.53334 4.60481 4.63254 4.67437 4.71683 4.82200 4.83281 4.86255 4.91517 4.98723 5.13593 5.19271 5.31565 5.33478 5.45174 5.46608 5.50387 5.53179 5.86417 6.22214 6.24540 6.52523 6.80468 7.26087 7.48052 8.90631 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.005427 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.554008 B = 5158.014303 C = 5752.854374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.073 3.927 4 C -0.097 4.097 5 H 0.031 0.969 6 C -0.102 4.102 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.090 3.910 10 N -0.604 5.604 11 C 0.519 3.481 12 O -0.586 6.586 13 C -0.005 4.005 14 H 0.062 0.938 15 C -0.150 4.150 16 C -0.522 4.522 17 H 0.025 0.975 18 C 0.005 3.995 19 N -0.954 5.954 20 Si 0.961 3.039 21 H -0.257 1.257 22 H -0.299 1.299 23 H -0.230 1.230 24 C 0.126 3.874 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.267 0.733 42 H 0.055 0.945 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.491 0.262 -23.360 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.004 4.004 4 C -0.117 4.117 5 H 0.050 0.950 6 C -0.139 4.139 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.031 4.031 10 N -0.336 5.336 11 C 0.309 3.691 12 O -0.465 6.465 13 C -0.027 4.027 14 H 0.080 0.920 15 C -0.207 4.207 16 C -0.560 4.560 17 H 0.043 0.957 18 C -0.192 4.192 19 N -0.594 5.594 20 Si 0.785 3.215 21 H -0.183 1.183 22 H -0.227 1.227 23 H -0.153 1.153 24 C 0.002 3.998 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.719 0.111 -22.791 24.777 hybrid contribution 0.284 -0.060 1.152 1.188 sum -9.435 0.052 -21.639 23.607 Atomic orbital electron populations 1.22917 0.79526 1.03718 1.00852 1.87847 1.21468 1.28681 1.95578 1.22482 0.92400 0.84519 1.01000 1.20628 0.94060 0.97721 0.99252 0.95037 1.20389 0.96006 1.01131 0.96409 1.21084 0.95187 0.98880 1.00601 1.21807 1.02536 0.95389 0.96282 1.22586 0.90631 1.01956 0.87919 1.47766 1.07319 1.72985 1.05559 1.21217 0.91862 0.73804 0.82183 1.90553 1.56789 1.51241 1.47938 1.19192 0.89866 0.97578 0.96041 0.92007 1.22329 0.99071 0.97447 1.01831 1.21110 0.93477 1.50267 0.91124 0.95670 1.26079 1.02501 0.93813 0.96758 1.70090 1.23873 1.51941 1.13539 0.85694 0.77205 0.78869 0.79747 1.18260 1.22725 1.15274 1.21221 0.80650 0.95527 1.02391 0.92198 0.88694 0.94086 0.94205 0.90170 0.89719 0.92627 0.90287 0.94960 0.89265 0.88324 0.89003 0.89900 0.88441 0.93760 0.93616 0.92419 0.92654 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -10.78 10.03 -148.98 -1.49 -12.27 16 3 C 0.07 1.73 5.28 71.98 0.38 2.11 16 4 C -0.10 -2.67 2.32 -12.19 -0.03 -2.69 16 5 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 6 C -0.10 -2.20 4.37 28.61 0.12 -2.08 16 7 C -0.12 -2.56 5.51 29.76 0.16 -2.40 16 8 C -0.12 -1.97 5.71 30.22 0.17 -1.80 16 9 C 0.09 2.04 4.44 86.48 0.38 2.42 16 10 N -0.60 -19.45 2.25 -819.29 -1.84 -21.29 16 11 C 0.52 23.76 7.02 87.65 0.62 24.38 16 12 O -0.59 -32.99 14.89 -3.04 -0.05 -33.04 16 13 C -0.01 -0.25 1.40 -12.29 -0.02 -0.27 16 14 H 0.06 2.79 6.48 -2.39 -0.02 2.77 16 15 C -0.15 -5.79 8.18 71.98 0.59 -5.20 16 16 C -0.52 -32.25 8.96 25.60 0.23 -32.02 16 17 H 0.02 1.84 7.00 -2.91 -0.02 1.82 16 18 C 0.00 0.27 5.45 84.66 0.46 0.74 16 19 N -0.95 -62.66 13.96 21.45 0.30 -62.36 16 20 Si 0.96 43.70 24.37 68.60 1.67 45.37 16 21 H -0.26 -10.81 6.87 99.48 0.68 -10.13 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.23 -8.99 6.53 99.48 0.65 -8.34 16 24 C 0.13 3.47 4.66 87.18 0.41 3.88 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 27 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.34 7.36 -2.39 -0.02 1.32 16 31 H 0.05 1.30 7.51 -2.38 -0.02 1.29 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.03 0.93 7.48 -2.39 -0.02 0.91 16 34 H 0.09 1.06 7.32 -2.39 -0.02 1.04 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.60 7.57 -2.39 -0.02 1.58 16 37 H 0.08 2.09 4.85 -2.39 -0.01 2.08 16 38 H 0.10 2.73 4.58 -2.38 -0.01 2.72 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 1.79 3.27 -2.39 -0.01 1.78 16 41 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 42 H 0.05 1.83 7.21 -2.39 -0.02 1.81 16 43 H 0.11 2.12 8.06 -2.38 -0.02 2.11 16 Total: -1.00 -83.18 320.52 4.22 -78.96 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.90 Total: 15.86 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.73 Total: -11.23 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.55 Total: -83.65 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.54 Total: -45.31 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -83.18 4.22 -78.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597516390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -83.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds