Wall clock time and date at job start Mon Mar 30 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47042 * 2 1 4 4 C 1.50704 * 109.46980 * 119.99749 * 2 1 3 5 5 H 1.07996 * 120.00182 * 119.99982 * 4 2 1 6 6 C 1.37881 * 119.99977 * 300.00077 * 4 2 1 7 7 N 1.31519 * 119.99900 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46975 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47295 * 119.99823 * 8 6 4 11 11 H 1.48503 * 109.47234 * 240.00095 * 8 6 4 12 12 C 1.50698 * 109.47568 * 239.99560 * 2 1 3 13 13 O 1.21280 * 120.00209 * 262.09034 * 12 2 1 14 14 N 1.34772 * 120.00075 * 82.08446 * 12 2 1 15 15 C 1.44581 * 118.64907 * 174.97571 * 14 12 2 16 16 C 1.54856 * 109.59615 * 89.29738 * 15 14 12 17 17 C 1.47091 * 110.32576 * 71.27242 * 16 15 14 18 18 H 1.08993 * 108.51688 * 58.44977 * 17 16 15 19 19 O 1.42904 * 108.51216 * 176.09922 * 17 16 15 20 20 C 1.52567 * 114.20593 * 297.27037 * 17 16 15 21 21 C 1.50680 * 109.46254 * 85.14116 * 20 17 16 22 22 C 1.53004 * 109.44893 * 147.79773 * 21 20 17 23 23 C 1.52992 * 109.29588 * 28.04086 * 21 20 17 24 24 C 1.47611 * 118.64157 * 354.99744 * 14 12 2 25 25 H 1.08999 * 109.47096 * 66.41530 * 1 2 3 26 26 H 1.09005 * 109.47089 * 186.41055 * 1 2 3 27 27 H 1.09001 * 109.47181 * 306.41162 * 1 2 3 28 28 H 0.96995 * 119.99805 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.44527 * 329.26057 * 15 14 12 30 30 H 1.08994 * 109.42926 * 209.32312 * 15 14 12 31 31 H 1.09001 * 109.33322 * 311.00417 * 16 15 14 32 32 H 1.09006 * 109.18911 * 191.44391 * 16 15 14 33 33 H 0.96699 * 113.99978 * 302.30457 * 19 17 16 34 34 H 1.09009 * 109.49092 * 204.89420 * 20 17 16 35 35 H 1.08996 * 109.49447 * 324.96742 * 20 17 16 36 36 H 1.09004 * 109.47156 * 180.54992 * 22 21 20 37 37 H 1.09008 * 109.46586 * 300.54432 * 22 21 20 38 38 H 1.08998 * 109.47529 * 60.54134 * 22 21 20 39 39 H 1.08996 * 109.47424 * 301.70628 * 23 21 20 40 40 H 1.09001 * 109.46988 * 61.70736 * 23 21 20 41 41 H 1.09006 * 109.47168 * 181.70246 * 23 21 20 42 42 H 1.08991 * 108.94807 * 342.79793 * 24 14 12 43 43 H 1.09000 * 108.94164 * 101.42223 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3224 -1.1194 4.0081 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1856 4.8162 11 1 1.1677 -1.5864 4.8166 12 6 2.0324 -0.7105 -1.2304 13 8 2.3709 -1.8732 -1.1635 14 7 2.1056 -0.0539 -2.4050 15 6 2.6939 -0.7282 -3.5406 16 6 1.5964 -1.5036 -4.3101 17 6 0.7072 -0.5669 -5.0140 18 1 1.3078 0.0334 -5.6972 19 8 -0.2315 -1.3227 -5.7820 20 6 -0.0653 0.3735 -4.0939 21 6 0.7867 1.5742 -3.7733 22 6 -0.1096 2.8004 -3.5890 23 6 1.7601 1.8258 -4.9264 24 6 1.5821 1.3243 -2.4790 25 1 -0.3633 0.4112 -0.9418 26 1 -0.3633 -1.0213 0.1147 27 1 -0.3633 0.6100 0.8270 28 1 0.7088 1.1616 3.4843 29 1 3.4558 -1.4261 -3.1934 30 1 3.1503 0.0076 -4.2027 31 1 1.0120 -2.0958 -3.6059 32 1 2.0680 -2.1672 -5.0350 33 1 0.1760 -1.9230 -6.4212 34 1 -0.9772 0.7024 -4.5926 35 1 -0.3225 -0.1491 -3.1726 36 1 0.5071 3.6712 -3.3667 37 1 -0.6737 2.9789 -4.5046 38 1 -0.8009 2.6247 -2.7648 39 1 2.3768 0.9405 -5.0811 40 1 1.1986 2.0408 -5.8356 41 1 2.3985 2.6756 -4.6842 42 1 0.9307 1.5019 -1.6234 43 1 2.4177 2.0229 -2.4367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597738782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:08 Heat of formation + Delta-G solvation = -104.524016 kcal Electronic energy + Delta-G solvation = -22798.828980 eV Core-core repulsion = 19650.281320 eV Total energy + Delta-G solvation = -3148.547660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.88393 -39.69376 -37.43485 -35.93459 -35.36426 -33.52048 -32.07725 -29.10553 -28.32090 -27.35278 -27.01768 -25.89457 -23.65529 -22.21349 -19.99033 -19.55544 -18.72743 -18.30304 -17.65505 -17.11374 -16.47497 -16.34083 -15.68196 -15.56081 -15.14068 -14.92487 -14.51339 -14.30775 -14.10303 -13.98128 -13.45718 -13.15007 -13.06993 -12.90359 -12.82871 -12.69868 -12.65125 -12.49817 -12.39712 -12.24890 -12.07189 -11.89381 -11.71463 -11.55271 -11.26642 -11.06325 -10.61699 -10.45641 -10.22250 -9.50644 -8.17792 -6.27636 1.37244 1.39308 1.52452 1.88705 2.20910 2.45035 3.11868 3.28056 3.59497 3.78310 3.79603 3.94726 4.11947 4.21825 4.27193 4.41292 4.47187 4.55812 4.65903 4.67936 4.73340 4.77287 4.89013 4.89668 4.92626 4.98586 5.00699 5.04655 5.14734 5.24317 5.25374 5.36178 5.41237 5.45559 5.54801 5.68817 5.80953 5.93732 6.15180 6.54623 6.78811 6.93028 7.37433 7.50520 8.88894 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026875 B = 0.005801 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.613740 B = 4825.971086 C = 5281.261986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.030 3.970 3 H 0.042 0.958 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.275 1.275 12 C 0.515 3.485 13 O -0.588 6.588 14 N -0.608 5.608 15 C 0.109 3.891 16 C -0.161 4.161 17 C 0.100 3.900 18 H 0.097 0.903 19 O -0.591 6.591 20 C -0.101 4.101 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.157 4.157 24 C 0.106 3.894 25 H 0.044 0.956 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.030 0.970 32 H 0.097 0.903 33 H 0.390 0.610 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 5.542 -18.321 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.201 1.201 12 C 0.306 3.694 13 O -0.468 6.468 14 N -0.340 5.340 15 C -0.014 4.014 16 C -0.200 4.200 17 C 0.042 3.958 18 H 0.114 0.886 19 O -0.400 6.400 20 C -0.138 4.138 21 C -0.065 4.065 22 C -0.195 4.195 23 C -0.213 4.213 24 C -0.015 4.015 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.150 5.407 -17.816 18.619 hybrid contribution 0.539 -1.175 1.080 1.685 sum 0.390 4.231 -16.736 17.267 Atomic orbital electron populations 1.21538 0.95584 0.99424 1.00464 1.18773 0.94708 0.95987 0.89696 0.94005 1.21261 1.31873 1.12373 0.91304 0.93954 1.25583 0.95129 0.95711 1.01341 1.69954 1.37086 1.23453 1.24330 0.85551 0.78371 0.78611 0.79403 1.20594 1.19514 1.20050 1.21690 0.75643 0.86432 0.85649 1.90488 1.50851 1.19084 1.86376 1.47811 1.60836 1.15853 1.09485 1.21596 0.94984 0.96980 0.87797 1.21921 0.98356 0.99443 1.00289 1.21097 0.89735 0.91689 0.93279 0.88616 1.86530 1.37802 1.59937 1.55707 1.21035 0.99137 0.95334 0.98326 1.20498 0.95833 0.95513 0.94668 1.21874 0.98999 0.96100 1.02481 1.22408 0.98970 1.02606 0.97340 1.22392 0.98616 0.81095 0.99425 0.93766 0.96784 0.90844 0.92502 0.92291 0.86604 0.95063 0.88447 0.76044 0.90395 0.94657 0.90922 0.90579 0.93366 0.90894 0.90541 0.91068 0.90451 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 8.43 71.98 0.61 -4.88 16 2 C 0.03 1.53 1.77 -12.29 -0.02 1.51 16 3 H 0.04 2.19 7.02 -2.39 -0.02 2.17 16 4 C -0.53 -31.48 8.34 25.60 0.21 -31.27 16 5 H 0.04 2.70 6.97 -2.91 -0.02 2.68 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.47 11.39 21.45 0.24 -51.23 16 8 Si 0.96 45.55 29.54 68.60 2.03 47.57 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.52 24.73 6.74 87.66 0.59 25.32 16 13 O -0.59 -32.59 15.23 -3.03 -0.05 -32.64 16 14 N -0.61 -21.66 2.23 -818.20 -1.83 -23.48 16 15 C 0.11 3.17 5.27 87.37 0.46 3.63 16 16 C -0.16 -4.29 5.21 29.39 0.15 -4.14 16 17 C 0.10 2.25 2.72 28.61 0.08 2.33 16 18 H 0.10 1.61 4.66 -2.39 -0.01 1.60 16 19 O -0.59 -13.61 13.17 -148.98 -1.96 -15.57 16 20 C -0.10 -2.60 4.53 29.70 0.13 -2.47 16 21 C -0.06 -1.39 0.75 -52.62 -0.04 -1.43 16 22 C -0.14 -2.57 8.16 71.98 0.59 -1.98 16 23 C -0.16 -2.41 6.76 71.98 0.49 -1.93 16 24 C 0.11 3.11 4.35 86.49 0.38 3.48 16 25 H 0.04 1.84 6.17 -2.39 -0.01 1.83 16 26 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 3.83 6.27 -2.39 -0.01 3.81 16 28 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.06 1.98 7.38 -2.39 -0.02 1.96 16 30 H 0.12 2.41 5.26 -2.39 -0.01 2.40 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.99 8.12 -2.38 -0.02 1.97 16 33 H 0.39 5.37 9.01 -74.06 -0.67 4.70 16 34 H 0.08 1.92 7.65 -2.38 -0.02 1.90 16 35 H 0.03 1.18 7.10 -2.39 -0.02 1.17 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.08 1.17 8.08 -2.38 -0.02 1.15 16 38 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 39 H 0.07 1.10 3.09 -2.39 -0.01 1.09 16 40 H 0.08 0.96 7.98 -2.39 -0.02 0.94 16 41 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 42 H 0.08 2.63 4.17 -2.39 -0.01 2.62 16 43 H 0.08 1.98 7.95 -2.39 -0.02 1.97 16 Total: -1.00 -72.57 317.04 2.86 -69.71 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.35 Total: 15.77 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.07 Total: -10.14 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.58 Total: -74.71 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.01 Total: -48.20 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.57 2.86 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597738782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.811 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds