Wall clock time and date at job start Mon Mar 30 2020 05:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47004 * 2 1 4 4 C 1.42898 * 113.99903 * 175.63463 * 3 2 1 5 5 H 1.09004 * 109.47514 * 340.57426 * 4 3 2 6 6 C 1.53007 * 109.47372 * 220.57212 * 4 3 2 7 7 C 1.50697 * 109.46950 * 64.99901 * 6 4 3 8 8 O 1.21290 * 120.00106 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00343 * 180.02562 * 7 6 4 10 10 C 1.47075 * 136.05320 * 359.62286 * 9 7 6 11 11 C 1.53756 * 87.88358 * 152.96765 * 10 9 7 12 12 C 1.50707 * 114.26098 * 139.79343 * 11 10 9 13 13 H 1.07996 * 119.99491 * 266.47235 * 12 11 10 14 14 C 1.37878 * 119.99878 * 86.47800 * 12 11 10 15 15 N 1.31509 * 119.99782 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99905 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47053 * 90.00465 * 16 14 12 18 18 H 1.48505 * 109.46871 * 209.99963 * 16 14 12 19 19 H 1.48502 * 109.47415 * 329.99936 * 16 14 12 20 20 C 1.47059 * 136.06136 * 180.02562 * 9 7 6 21 21 C 1.53002 * 109.47210 * 100.57122 * 4 3 2 22 22 C 1.53002 * 109.47284 * 184.20649 * 21 4 3 23 23 C 1.52997 * 109.47380 * 304.21050 * 21 4 3 24 24 H 1.09005 * 109.47500 * 299.99860 * 1 2 3 25 25 H 1.09001 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47399 * 59.99743 * 1 2 3 27 27 H 1.09005 * 109.47134 * 119.99804 * 2 1 3 28 28 H 1.08995 * 109.47476 * 240.00150 * 2 1 3 29 29 H 1.08996 * 109.47219 * 185.00103 * 6 4 3 30 30 H 1.09001 * 109.46570 * 305.00104 * 6 4 3 31 31 H 1.08999 * 113.46860 * 267.70296 * 10 9 7 32 32 H 1.08996 * 113.46268 * 38.13839 * 10 9 7 33 33 H 1.08997 * 114.39526 * 272.67813 * 11 10 9 34 34 H 0.97007 * 120.00293 * 179.97438 * 15 14 12 35 35 H 1.09001 * 113.47110 * 321.85847 * 20 9 7 36 36 H 1.09000 * 113.47247 * 92.24283 * 20 9 7 37 37 H 1.09006 * 109.46856 * 64.20916 * 21 4 3 38 38 H 1.09006 * 109.46955 * 60.00329 * 22 21 4 39 39 H 1.08997 * 109.46971 * 180.02562 * 22 21 4 40 40 H 1.09001 * 109.47154 * 300.00539 * 22 21 4 41 41 H 1.09003 * 109.46966 * 65.51152 * 23 21 4 42 42 H 1.08994 * 109.47008 * 185.51272 * 23 21 4 43 43 H 1.09002 * 109.46964 * 305.51811 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4272 1.4614 0.0994 5 1 3.8395 0.5333 0.4954 6 6 3.7818 2.6178 1.0364 7 6 3.3091 2.2973 2.4310 8 8 2.7446 1.2471 2.6536 9 7 3.5135 3.1776 3.4309 10 6 4.1392 4.5019 3.5644 11 6 3.1976 4.7640 4.7513 12 6 3.8445 5.4809 5.9084 13 1 4.2685 4.9154 6.7249 14 6 3.8950 6.8587 5.9244 15 7 4.4591 7.4842 6.9344 16 14 3.1621 7.8366 4.5117 17 1 1.7363 8.1332 4.8022 18 1 3.9097 9.1097 4.3507 19 1 3.2578 7.0446 3.2592 20 6 3.2155 3.2336 4.8699 21 6 4.0155 1.7299 -1.2873 22 6 5.5429 1.7478 -1.1986 23 6 3.5735 0.6269 -2.2511 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 4.8622 2.7619 1.0431 30 1 3.2958 3.5294 0.6885 31 1 5.1912 4.4585 3.8462 32 1 3.9573 5.1557 2.7115 33 1 2.2288 5.1797 4.4742 34 1 4.4950 8.4535 6.9456 35 1 2.2467 2.8069 5.1295 36 1 4.0239 2.8552 5.4956 37 1 3.6614 2.6942 -1.6517 38 1 5.8970 0.7834 -0.8342 39 1 5.9619 1.9395 -2.1863 40 1 5.8577 2.5336 -0.5119 41 1 2.4936 0.6772 -2.3901 42 1 4.0702 0.7633 -3.2117 43 1 3.8418 -0.3455 -1.8381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:32 Heat of formation + Delta-G solvation = -64.990554 kcal Electronic energy + Delta-G solvation = -21414.708223 eV Core-core repulsion = 18267.874863 eV Total energy + Delta-G solvation = -3146.833360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.85289 -38.72498 -36.94476 -35.13578 -32.65160 -31.64772 -30.43705 -29.06525 -27.19158 -25.60042 -25.06433 -23.53535 -22.63302 -20.30216 -19.98258 -18.24759 -17.20411 -16.95567 -16.59345 -15.70336 -15.43311 -15.00536 -14.42821 -14.19170 -13.95963 -13.76312 -13.49899 -13.10266 -12.83633 -12.58605 -12.33332 -12.25998 -12.10103 -12.00445 -11.83060 -11.67148 -11.49408 -11.27966 -10.96304 -10.87107 -10.79878 -10.67576 -10.59480 -10.09186 -9.79685 -9.34882 -9.28537 -9.07162 -8.66205 -7.99379 -6.21427 -4.24047 3.13528 3.21248 3.30439 3.30686 3.46886 3.77059 4.30700 4.59751 4.67639 4.87563 5.01812 5.07009 5.13814 5.20414 5.27423 5.37220 5.43457 5.46847 5.50986 5.58931 5.67675 5.69627 5.76253 5.79420 5.88272 5.92466 5.98786 6.03508 6.11748 6.15861 6.16722 6.21792 6.27026 6.35266 6.43946 6.57989 7.15430 7.39011 7.54906 8.33378 8.44486 8.70174 8.82294 9.39837 10.90616 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.004410 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.282319 B = 6347.830812 C = 6744.417264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.371 6.371 4 C 0.115 3.885 5 H 0.067 0.933 6 C -0.141 4.141 7 C 0.537 3.463 8 O -0.556 6.556 9 N -0.648 5.648 10 C 0.084 3.916 11 C -0.007 4.007 12 C -0.513 4.513 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.260 1.260 20 C 0.114 3.886 21 C -0.115 4.115 22 C -0.150 4.150 23 C -0.146 4.146 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.266 0.734 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 -10.939 -17.126 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.290 6.290 4 C 0.056 3.944 5 H 0.085 0.915 6 C -0.181 4.181 7 C 0.327 3.673 8 O -0.436 6.436 9 N -0.382 5.382 10 C -0.038 4.038 11 C -0.026 4.026 12 C -0.551 4.551 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.702 3.298 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.008 4.008 21 C -0.134 4.134 22 C -0.207 4.207 23 C -0.203 4.203 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.174 -11.303 -17.114 20.544 hybrid contribution -0.035 0.552 -0.661 0.862 sum -1.209 -10.751 -17.775 20.808 Atomic orbital electron populations 1.21709 0.94403 1.01691 1.02813 1.22525 0.95092 0.84140 0.99892 1.87857 1.20458 1.26409 1.94317 1.21783 0.82144 0.97710 0.92772 0.91471 1.21897 1.02824 1.00805 0.92541 1.19979 0.79318 0.82389 0.85635 1.90616 1.44074 1.24715 1.84163 1.49966 1.57906 1.20461 1.09877 1.23950 0.99620 0.80530 0.99749 1.20797 0.95607 0.91987 0.94253 1.20782 1.38034 0.91455 1.04804 0.90252 1.25005 0.94337 0.97738 0.95566 1.69894 1.43444 1.09065 1.30522 0.86891 0.79651 0.79769 0.83447 1.20138 1.21250 1.18469 1.23067 1.00058 0.98139 0.79550 1.21601 0.95767 1.00365 0.95665 1.21902 0.94634 1.02166 1.02018 1.21861 1.01724 0.98033 0.98702 0.91793 0.91608 0.92414 0.92714 0.93903 0.88046 0.88544 0.89791 0.92376 0.92209 0.92364 0.92180 0.90350 0.90395 0.92576 0.92341 0.92099 0.92018 0.92690 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.15 0.38 -1.33 16 2 C 0.06 0.78 5.86 37.15 0.22 0.99 16 3 O -0.37 -5.57 8.78 -49.64 -0.44 -6.01 16 4 C 0.11 1.52 1.41 -26.73 -0.04 1.49 16 5 H 0.07 0.93 7.44 -51.93 -0.39 0.55 16 6 C -0.14 -2.04 5.09 -27.88 -0.14 -2.18 16 7 C 0.54 10.08 7.96 -10.99 -0.09 9.99 16 8 O -0.56 -11.80 15.71 -8.86 -0.14 -11.94 16 9 N -0.65 -12.65 3.69 -185.05 -0.68 -13.33 16 10 C 0.08 1.64 7.43 -8.37 -0.06 1.58 16 11 C -0.01 -0.15 2.97 -91.11 -0.27 -0.42 16 12 C -0.51 -13.31 9.38 -34.44 -0.32 -13.63 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 16 Si 0.88 19.96 27.15 -169.99 -4.62 15.35 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.26 -5.53 5.72 56.52 0.32 -5.20 16 20 C 0.11 2.32 8.17 -8.50 -0.07 2.25 16 21 C -0.12 -1.20 2.70 -90.62 -0.24 -1.44 16 22 C -0.15 -1.34 8.94 37.16 0.33 -1.01 16 23 C -0.15 -1.35 7.77 37.16 0.29 -1.06 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.79 7.67 -51.93 -0.40 0.39 16 28 H 0.04 0.46 5.87 -51.93 -0.30 0.16 16 29 H 0.10 1.25 6.31 -51.93 -0.33 0.92 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 32 H 0.06 1.07 7.15 -51.93 -0.37 0.70 16 33 H 0.06 1.34 7.03 -51.93 -0.37 0.97 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 41 H 0.06 0.61 6.84 -51.93 -0.35 0.25 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.47 7.82 -51.93 -0.41 0.06 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -29.97 341.07 -7.60 -37.57 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.53 Total: 0.97 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.11 Total: -2.81 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.09 Total: -38.27 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.58 Total: -17.95 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.62 Total: 15.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.97 -7.60 -37.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.419 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds