Wall clock time and date at job start Mon Mar 30 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47004 * 2 1 4 4 C 1.42898 * 113.99903 * 175.63463 * 3 2 1 5 5 H 1.09004 * 109.47514 * 340.57426 * 4 3 2 6 6 C 1.53007 * 109.47372 * 220.57212 * 4 3 2 7 7 C 1.50697 * 109.46950 * 64.99901 * 6 4 3 8 8 O 1.21290 * 120.00106 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00343 * 180.02562 * 7 6 4 10 10 C 1.47075 * 136.05320 * 359.62286 * 9 7 6 11 11 C 1.53756 * 87.88358 * 152.96765 * 10 9 7 12 12 C 1.50707 * 114.26098 * 139.79343 * 11 10 9 13 13 H 1.07996 * 119.99491 * 266.47235 * 12 11 10 14 14 C 1.37878 * 119.99878 * 86.47800 * 12 11 10 15 15 N 1.31509 * 119.99782 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99905 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47053 * 90.00465 * 16 14 12 18 18 H 1.48505 * 109.46871 * 209.99963 * 16 14 12 19 19 H 1.48502 * 109.47415 * 329.99936 * 16 14 12 20 20 C 1.47059 * 136.06136 * 180.02562 * 9 7 6 21 21 C 1.53002 * 109.47210 * 100.57122 * 4 3 2 22 22 C 1.53002 * 109.47284 * 184.20649 * 21 4 3 23 23 C 1.52997 * 109.47380 * 304.21050 * 21 4 3 24 24 H 1.09005 * 109.47500 * 299.99860 * 1 2 3 25 25 H 1.09001 * 109.47544 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47399 * 59.99743 * 1 2 3 27 27 H 1.09005 * 109.47134 * 119.99804 * 2 1 3 28 28 H 1.08995 * 109.47476 * 240.00150 * 2 1 3 29 29 H 1.08996 * 109.47219 * 185.00103 * 6 4 3 30 30 H 1.09001 * 109.46570 * 305.00104 * 6 4 3 31 31 H 1.08999 * 113.46860 * 267.70296 * 10 9 7 32 32 H 1.08996 * 113.46268 * 38.13839 * 10 9 7 33 33 H 1.08997 * 114.39526 * 272.67813 * 11 10 9 34 34 H 0.97007 * 120.00293 * 179.97438 * 15 14 12 35 35 H 1.09001 * 113.47110 * 321.85847 * 20 9 7 36 36 H 1.09000 * 113.47247 * 92.24283 * 20 9 7 37 37 H 1.09006 * 109.46856 * 64.20916 * 21 4 3 38 38 H 1.09006 * 109.46955 * 60.00329 * 22 21 4 39 39 H 1.08997 * 109.46971 * 180.02562 * 22 21 4 40 40 H 1.09001 * 109.47154 * 300.00539 * 22 21 4 41 41 H 1.09003 * 109.46966 * 65.51152 * 23 21 4 42 42 H 1.08994 * 109.47008 * 185.51272 * 23 21 4 43 43 H 1.09002 * 109.46964 * 305.51811 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4272 1.4614 0.0994 5 1 3.8395 0.5333 0.4954 6 6 3.7818 2.6178 1.0364 7 6 3.3091 2.2973 2.4310 8 8 2.7446 1.2471 2.6536 9 7 3.5135 3.1776 3.4309 10 6 4.1392 4.5019 3.5644 11 6 3.1976 4.7640 4.7513 12 6 3.8445 5.4809 5.9084 13 1 4.2685 4.9154 6.7249 14 6 3.8950 6.8587 5.9244 15 7 4.4591 7.4842 6.9344 16 14 3.1621 7.8366 4.5117 17 1 1.7363 8.1332 4.8022 18 1 3.9097 9.1097 4.3507 19 1 3.2578 7.0446 3.2592 20 6 3.2155 3.2336 4.8699 21 6 4.0155 1.7299 -1.2873 22 6 5.5429 1.7478 -1.1986 23 6 3.5735 0.6269 -2.2511 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 4.8622 2.7619 1.0431 30 1 3.2958 3.5294 0.6885 31 1 5.1912 4.4585 3.8462 32 1 3.9573 5.1557 2.7115 33 1 2.2288 5.1797 4.4742 34 1 4.4950 8.4535 6.9456 35 1 2.2467 2.8069 5.1295 36 1 4.0239 2.8552 5.4956 37 1 3.6614 2.6942 -1.6517 38 1 5.8970 0.7834 -0.8342 39 1 5.9619 1.9395 -2.1863 40 1 5.8577 2.5336 -0.5119 41 1 2.4936 0.6772 -2.3901 42 1 4.0702 0.7633 -3.2117 43 1 3.8418 -0.3455 -1.8381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:31 Heat of formation + Delta-G solvation = -82.580384 kcal Electronic energy + Delta-G solvation = -21415.470975 eV Core-core repulsion = 18267.874863 eV Total energy + Delta-G solvation = -3147.596112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30350 -39.94521 -38.44669 -36.02753 -34.66034 -32.71335 -31.73829 -30.50393 -27.93283 -27.23012 -26.73261 -24.70801 -23.62474 -21.83822 -21.01370 -19.78848 -19.12104 -18.02015 -17.97293 -16.93992 -16.69154 -16.62794 -15.90400 -15.33207 -15.18696 -15.01818 -14.75231 -14.57805 -13.95743 -13.87125 -13.55977 -13.44481 -13.28881 -13.02866 -12.93790 -12.90321 -12.61038 -12.60494 -12.49252 -12.14664 -11.90607 -11.82351 -11.64295 -11.57988 -11.51021 -11.21170 -10.76904 -10.59971 -10.27361 -9.59554 -8.27104 -6.34865 1.42589 1.45315 1.55307 1.67425 1.98543 2.39686 2.77859 3.04789 3.45403 3.74661 3.96643 4.02892 4.08329 4.20731 4.23732 4.30241 4.36694 4.44875 4.46578 4.51958 4.54006 4.62466 4.67477 4.76747 4.79979 4.82025 4.83988 4.90857 4.98130 5.00848 5.03864 5.09101 5.21654 5.26409 5.37354 5.41743 5.44119 5.61185 6.28931 6.37980 6.71268 6.90863 7.18931 7.33061 8.88453 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.004410 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.282319 B = 6347.830812 C = 6744.417264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.393 6.393 4 C 0.113 3.887 5 H 0.056 0.944 6 C -0.135 4.135 7 C 0.531 3.469 8 O -0.585 6.585 9 N -0.649 5.649 10 C 0.099 3.901 11 C -0.015 4.015 12 C -0.514 4.514 13 H 0.040 0.960 14 C 0.022 3.978 15 N -0.944 5.944 16 Si 0.939 3.061 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.229 1.229 20 C 0.113 3.887 21 C -0.109 4.109 22 C -0.149 4.149 23 C -0.145 4.145 24 H 0.040 0.960 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.268 0.732 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -10.989 -20.445 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.018 4.018 3 O -0.312 6.312 4 C 0.055 3.945 5 H 0.074 0.926 6 C -0.174 4.174 7 C 0.322 3.678 8 O -0.466 6.466 9 N -0.384 5.384 10 C -0.023 4.023 11 C -0.035 4.035 12 C -0.552 4.552 13 H 0.059 0.941 14 C -0.177 4.177 15 N -0.583 5.583 16 Si 0.763 3.237 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.152 1.152 20 C -0.010 4.010 21 C -0.127 4.127 22 C -0.206 4.206 23 C -0.202 4.202 24 H 0.059 0.941 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.148 -11.380 -20.454 23.435 hybrid contribution -0.049 0.457 0.474 0.661 sum -1.197 -10.922 -19.980 22.802 Atomic orbital electron populations 1.21723 0.93507 1.02991 1.02099 1.22612 0.95883 0.83467 0.99832 1.87821 1.21473 1.27475 1.94474 1.21905 0.81627 0.96758 0.94260 0.92584 1.21998 1.04302 1.01601 0.89514 1.20825 0.78443 0.81658 0.86828 1.90610 1.45236 1.25953 1.84789 1.49984 1.58121 1.20823 1.09428 1.23710 0.99008 0.80661 0.98945 1.20725 0.96076 0.92435 0.94229 1.20928 1.37526 0.91652 1.05110 0.94124 1.25852 0.94738 0.98855 0.98237 1.70039 1.45687 1.09458 1.33105 0.85870 0.78338 0.78308 0.81221 1.20207 1.21251 1.15163 1.22951 1.00069 0.97105 0.80827 1.21549 0.96585 1.00782 0.93824 1.21908 0.93407 1.02274 1.03022 1.21847 1.01440 0.97679 0.99203 0.94059 0.89391 0.91433 0.95007 0.91614 0.85555 0.87613 0.89374 0.90121 0.91904 0.92301 0.92304 0.90542 0.90264 0.92564 0.90814 0.91970 0.92704 0.91047 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.06 1.45 5.86 71.98 0.42 1.87 16 3 O -0.39 -11.24 8.78 -135.21 -1.19 -12.42 16 4 C 0.11 2.78 1.41 30.60 0.04 2.82 16 5 H 0.06 1.49 7.44 -2.38 -0.02 1.47 16 6 C -0.13 -3.54 5.09 29.85 0.15 -3.39 16 7 C 0.53 19.10 7.96 87.66 0.70 19.80 16 8 O -0.58 -24.58 15.71 10.71 0.17 -24.41 16 9 N -0.65 -24.28 3.69 -857.76 -3.16 -27.44 16 10 C 0.10 3.61 7.43 83.26 0.62 4.23 16 11 C -0.02 -0.65 2.97 -11.11 -0.03 -0.68 16 12 C -0.51 -27.04 9.38 25.60 0.24 -26.80 16 13 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 14 C 0.02 1.17 5.47 84.66 0.46 1.63 16 15 N -0.94 -55.60 13.96 21.45 0.30 -55.31 16 16 Si 0.94 40.17 27.15 68.60 1.86 42.03 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.23 -8.53 5.72 99.48 0.57 -7.96 16 20 C 0.11 4.58 8.17 83.19 0.68 5.26 16 21 C -0.11 -1.95 2.70 -10.79 -0.03 -1.97 16 22 C -0.15 -2.17 8.94 71.98 0.64 -1.53 16 23 C -0.14 -2.27 7.77 71.98 0.56 -1.71 16 24 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.92 7.67 -2.38 -0.02 0.90 16 28 H 0.07 1.30 5.87 -2.39 -0.01 1.29 16 29 H 0.13 2.68 6.31 -2.39 -0.02 2.66 16 30 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.09 3.16 8.10 -2.39 -0.02 3.14 16 32 H 0.08 2.60 7.15 -2.39 -0.02 2.59 16 33 H 0.06 2.69 7.03 -2.39 -0.02 2.67 16 34 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.89 6.44 -2.39 -0.02 0.87 16 41 H 0.05 0.94 6.84 -2.39 -0.02 0.92 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 Total: -1.00 -65.59 341.07 4.00 -61.58 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.83 Total: 18.90 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.20 Total: -2.92 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -2.86 Total: -82.75 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.02 Total: -36.84 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 1.86 Total: 42.03 kcal Total: -65.59 4.00 -61.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.998 kcal (2) G-P(sol) polarization free energy of solvation -65.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds