Wall clock time and date at job start Mon Mar 30 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47084 * 119.99939 * 8 6 4 11 11 H 1.48498 * 109.47582 * 240.00361 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 C 1.34779 * 119.99726 * 119.99799 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.46653 * 179.97438 * 16 14 12 18 18 H 1.08999 * 110.55786 * 305.70349 * 17 16 14 19 19 C 1.55004 * 110.61797 * 182.82072 * 17 16 14 20 20 C 1.54984 * 102.01425 * 204.59981 * 19 17 16 21 21 C 1.53002 * 110.34169 * 262.02717 * 20 19 17 22 22 C 1.52995 * 110.68536 * 139.47577 * 20 19 17 23 23 C 1.54101 * 104.25206 * 20.66462 * 20 19 17 24 24 O 1.43745 * 107.29647 * 2.16933 * 23 20 19 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 27 27 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 30 30 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 31 31 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 32 32 H 1.08996 * 109.47057 * 299.99739 * 16 14 12 33 33 H 1.08996 * 109.47084 * 60.00703 * 16 14 12 34 34 H 1.08996 * 110.90547 * 322.67860 * 19 17 16 35 35 H 1.09002 * 110.90589 * 86.27879 * 19 17 16 36 36 H 1.08997 * 109.47273 * 176.21558 * 21 20 19 37 37 H 1.09003 * 109.47000 * 296.21663 * 21 20 19 38 38 H 1.09001 * 109.47066 * 56.21300 * 21 20 19 39 39 H 1.09000 * 109.47301 * 303.58376 * 22 20 19 40 40 H 1.09006 * 109.47196 * 63.58778 * 22 20 19 41 41 H 1.09007 * 109.47044 * 183.58274 * 22 20 19 42 42 H 1.09003 * 109.88396 * 242.73946 * 23 20 19 43 43 H 1.09008 * 110.00151 * 121.65752 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8917 16 6 3.2960 -0.7461 -3.3135 17 6 4.1454 0.2159 -4.1467 18 1 3.5871 1.1253 -4.3686 19 6 4.6185 -0.4671 -5.4553 20 6 5.8958 0.3412 -5.7975 21 6 5.5804 1.4197 -6.8360 22 6 7.0011 -0.5852 -6.3081 23 6 6.3071 0.9852 -4.4592 24 8 5.3773 0.5297 -3.4621 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 0.7376 -2.1444 -1.9994 30 1 1.5296 -2.5968 -0.4709 31 1 2.4630 -2.5818 -1.9864 32 1 3.9018 -1.6022 -3.0165 33 1 2.4485 -1.0890 -3.9070 34 1 4.8583 -1.5161 -5.2818 35 1 3.8689 -0.3655 -6.2401 36 1 6.4708 2.0219 -7.0163 37 1 5.2669 0.9470 -7.7668 38 1 4.7788 2.0582 -6.4648 39 1 7.1995 -1.3579 -5.5653 40 1 6.6827 -1.0510 -7.2408 41 1 7.9085 -0.0068 -6.4821 42 1 6.2610 2.0712 -4.5407 43 1 7.3178 0.6763 -4.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717059008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:51 Heat of formation + Delta-G solvation = -94.612578 kcal Electronic energy + Delta-G solvation = -21571.338924 eV Core-core repulsion = 18423.221056 eV Total energy + Delta-G solvation = -3148.117867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.02770 -38.66098 -35.26936 -34.50728 -32.89410 -31.91272 -29.42390 -27.59110 -27.09277 -25.98043 -25.72310 -25.15008 -22.01621 -20.51076 -19.49719 -18.10926 -16.66126 -16.37789 -16.00436 -15.32743 -15.24873 -14.91399 -14.38080 -14.10277 -13.86568 -13.63061 -13.36313 -12.91859 -12.64624 -12.41152 -12.33136 -11.99960 -11.71713 -11.63789 -11.50619 -11.39839 -11.30061 -11.01252 -10.83565 -10.77825 -10.76085 -10.61178 -10.50490 -10.17419 -10.11402 -9.38010 -9.10463 -8.77270 -8.36454 -7.47495 -6.01714 -4.09105 3.29546 3.37326 3.40406 3.53902 3.98614 4.04883 4.32474 4.44736 4.59127 4.74876 4.98982 5.10915 5.22549 5.28085 5.29750 5.38374 5.48153 5.50070 5.54289 5.62150 5.69496 5.75857 5.76619 5.81254 5.93361 5.94554 6.02441 6.09272 6.13195 6.23390 6.42967 6.81086 6.89403 7.12527 7.15439 7.52124 7.62106 7.78918 8.09278 8.27619 8.64103 8.91166 9.20010 9.57415 11.03659 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031481 B = 0.004118 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.211307 B = 6798.082485 C = 7002.480173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.597 5.597 13 C 0.085 3.915 14 C 0.504 3.496 15 O -0.543 6.543 16 C -0.136 4.136 17 C 0.097 3.903 18 H 0.075 0.925 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.138 4.138 22 C -0.135 4.135 23 C 0.053 3.947 24 O -0.355 6.355 25 H 0.092 0.908 26 H 0.010 0.990 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 -4.845 -18.116 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.329 5.329 13 C -0.060 4.060 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.176 4.176 17 C 0.039 3.961 18 H 0.093 0.907 19 C -0.181 4.181 20 C -0.102 4.102 21 C -0.196 4.196 22 C -0.192 4.192 23 C -0.024 4.024 24 O -0.274 6.274 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.582 -4.131 -17.616 19.254 hybrid contribution 0.234 -0.582 0.669 0.917 sum 6.817 -4.714 -16.948 18.866 Atomic orbital electron populations 1.22077 0.98329 0.99274 1.00680 1.18907 0.90736 0.94581 0.80095 0.91966 1.21377 1.31497 1.12913 0.90370 0.92244 1.24898 0.95002 0.95010 0.98954 1.69897 1.36559 1.22698 1.23535 0.86449 0.78557 0.79607 0.82824 1.19824 1.20932 1.20989 1.48226 1.49413 1.11536 1.23755 1.21576 0.98573 0.83554 1.02261 1.20258 0.79060 0.87267 0.84372 1.90661 1.57598 1.17138 1.76688 1.21775 1.00059 0.99455 0.96306 1.22797 0.86826 0.96803 0.89665 0.90732 1.23366 0.96703 1.00105 0.97915 1.21980 0.95878 0.96189 0.96196 1.21875 1.01756 0.97907 0.98025 1.21829 0.97422 0.98962 1.01033 1.23274 0.94080 0.98251 0.86800 1.89043 1.22124 1.86019 1.30190 0.88922 0.97127 0.95254 0.92820 0.94074 0.90235 0.92912 0.88708 0.88414 0.90328 0.90199 0.92403 0.92393 0.92210 0.92203 0.92485 0.92491 0.92555 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.80 2.64 -69.08 -0.18 6.62 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.56 7.99 -34.44 -0.28 -14.83 16 5 H 0.06 1.63 7.33 -52.49 -0.38 1.25 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.60 -13.20 2.75 -175.25 -0.48 -13.69 16 13 C 0.08 1.44 9.24 59.85 0.55 2.00 16 14 C 0.50 10.88 7.60 -10.98 -0.08 10.80 16 15 O -0.54 -14.11 14.94 -2.57 -0.04 -14.15 16 16 C -0.14 -2.08 4.02 -27.88 -0.11 -2.19 16 17 C 0.10 1.44 2.77 -25.67 -0.07 1.37 16 18 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 19 C -0.14 -1.51 5.71 -24.63 -0.14 -1.65 16 20 C -0.10 -1.02 0.99 -152.89 -0.15 -1.17 16 21 C -0.14 -1.19 8.25 37.16 0.31 -0.88 16 22 C -0.14 -1.11 8.28 37.16 0.31 -0.80 16 23 C 0.05 0.69 7.03 37.73 0.27 0.95 16 24 O -0.36 -6.20 10.75 -43.36 -0.47 -6.67 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 31 H 0.05 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.09 1.35 7.40 -51.93 -0.38 0.96 16 33 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 35 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 43 H 0.08 0.93 7.70 -51.92 -0.40 0.53 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -33.14 338.80 -7.12 -40.26 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.50 Total: -0.90 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 0.66 Total: -1.35 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.14 Total: -38.79 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.50 Total: -20.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.14 -7.12 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717059008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.349 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds