Wall clock time and date at job start Mon Mar 30 2020 05:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47062 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47084 * 119.99939 * 8 6 4 11 11 H 1.48498 * 109.47582 * 240.00361 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 C 1.34779 * 119.99726 * 119.99799 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.46653 * 179.97438 * 16 14 12 18 18 H 1.08999 * 110.55786 * 305.70349 * 17 16 14 19 19 C 1.55004 * 110.61797 * 182.82072 * 17 16 14 20 20 C 1.54984 * 102.01425 * 204.59981 * 19 17 16 21 21 C 1.53002 * 110.34169 * 262.02717 * 20 19 17 22 22 C 1.52995 * 110.68536 * 139.47577 * 20 19 17 23 23 C 1.54101 * 104.25206 * 20.66462 * 20 19 17 24 24 O 1.43745 * 107.29647 * 2.16933 * 23 20 19 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 27 27 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 30 30 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 31 31 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 32 32 H 1.08996 * 109.47057 * 299.99739 * 16 14 12 33 33 H 1.08996 * 109.47084 * 60.00703 * 16 14 12 34 34 H 1.08996 * 110.90547 * 322.67860 * 19 17 16 35 35 H 1.09002 * 110.90589 * 86.27879 * 19 17 16 36 36 H 1.08997 * 109.47273 * 176.21558 * 21 20 19 37 37 H 1.09003 * 109.47000 * 296.21663 * 21 20 19 38 38 H 1.09001 * 109.47066 * 56.21300 * 21 20 19 39 39 H 1.09000 * 109.47301 * 303.58376 * 22 20 19 40 40 H 1.09006 * 109.47196 * 63.58778 * 22 20 19 41 41 H 1.09007 * 109.47044 * 183.58274 * 22 20 19 42 42 H 1.09003 * 109.88396 * 242.73946 * 23 20 19 43 43 H 1.09008 * 110.00151 * 121.65752 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.1484 -2.2857 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5866 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8917 16 6 3.2960 -0.7461 -3.3135 17 6 4.1454 0.2159 -4.1467 18 1 3.5871 1.1253 -4.3686 19 6 4.6185 -0.4671 -5.4553 20 6 5.8958 0.3412 -5.7975 21 6 5.5804 1.4197 -6.8360 22 6 7.0011 -0.5852 -6.3081 23 6 6.3071 0.9852 -4.4592 24 8 5.3773 0.5297 -3.4621 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 0.7376 -2.1444 -1.9994 30 1 1.5296 -2.5968 -0.4709 31 1 2.4630 -2.5818 -1.9864 32 1 3.9018 -1.6022 -3.0165 33 1 2.4485 -1.0890 -3.9070 34 1 4.8583 -1.5161 -5.2818 35 1 3.8689 -0.3655 -6.2401 36 1 6.4708 2.0219 -7.0163 37 1 5.2669 0.9470 -7.7668 38 1 4.7788 2.0582 -6.4648 39 1 7.1995 -1.3579 -5.5653 40 1 6.6827 -1.0510 -7.2408 41 1 7.9085 -0.0068 -6.4821 42 1 6.2610 2.0712 -4.5407 43 1 7.3178 0.6763 -4.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717059008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:51 Heat of formation + Delta-G solvation = -115.965511 kcal Electronic energy + Delta-G solvation = -21572.264856 eV Core-core repulsion = 18423.221056 eV Total energy + Delta-G solvation = -3149.043800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20424 -40.19460 -37.10288 -35.48303 -34.83072 -33.27692 -31.26295 -28.29636 -28.13461 -27.45347 -27.29376 -26.72776 -23.52832 -21.99856 -20.46772 -19.68307 -18.51332 -17.93561 -17.45313 -16.93758 -16.41584 -16.33318 -15.95077 -15.61580 -14.81897 -14.52262 -14.47780 -14.27609 -14.14460 -13.83423 -13.60131 -13.46389 -13.08081 -12.97145 -12.83345 -12.72230 -12.64199 -12.59013 -12.41038 -12.24267 -12.16973 -12.10337 -11.63745 -11.55434 -11.44733 -11.17044 -10.62862 -10.52085 -10.41319 -9.27050 -8.14808 -6.31462 1.39304 1.41378 1.52812 1.90018 2.34298 2.52712 2.99027 3.12775 3.47459 3.68807 3.89010 3.90318 4.06281 4.19811 4.35940 4.40924 4.53051 4.62321 4.65977 4.75842 4.77996 4.80059 4.81212 4.82796 4.89954 4.90587 5.04180 5.05898 5.06625 5.09674 5.16341 5.23658 5.32836 5.46622 5.48421 5.62696 5.68980 6.06607 6.08994 6.17738 6.77389 6.90055 7.34254 7.55912 8.89767 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031481 B = 0.004118 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.211307 B = 6798.082485 C = 7002.480173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.260 3.740 3 H 0.003 0.997 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.606 5.606 13 C 0.079 3.921 14 C 0.489 3.511 15 O -0.602 6.602 16 C -0.121 4.121 17 C 0.088 3.912 18 H 0.050 0.950 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.137 4.137 22 C -0.131 4.131 23 C 0.043 3.957 24 O -0.399 6.399 25 H 0.065 0.935 26 H 0.019 0.981 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.945 -7.703 -20.065 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.157 3.843 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.337 5.337 13 C -0.063 4.063 14 C 0.279 3.721 15 O -0.484 6.484 16 C -0.160 4.160 17 C 0.031 3.969 18 H 0.068 0.932 19 C -0.167 4.167 20 C -0.097 4.097 21 C -0.194 4.194 22 C -0.188 4.188 23 C -0.034 4.034 24 O -0.319 6.319 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.033 -7.036 -19.596 21.977 hybrid contribution 0.106 0.382 1.275 1.335 sum 7.140 -6.653 -18.321 20.758 Atomic orbital electron populations 1.21845 0.97049 1.00105 0.99795 1.18496 0.91668 0.92053 0.82059 0.97950 1.21628 1.31692 1.12995 0.91280 0.92196 1.25774 0.95105 0.95686 1.02125 1.70042 1.37458 1.23985 1.24316 0.85386 0.78255 0.78459 0.78780 1.18867 1.21248 1.19705 1.48275 1.49398 1.13504 1.22498 1.21861 1.01386 0.80457 1.02565 1.21452 0.77974 0.86917 0.85775 1.90629 1.59507 1.20026 1.78213 1.21828 1.01566 0.99138 0.93509 1.22910 0.86041 0.96390 0.91598 0.93157 1.23337 0.97191 1.00373 0.95790 1.21976 0.96355 0.96647 0.94722 1.21874 1.01654 0.97566 0.98321 1.21805 0.96955 0.98493 1.01575 1.23501 0.93809 0.98058 0.88017 1.88995 1.23626 1.86419 1.32889 0.91579 0.96197 0.93323 0.92681 0.91300 0.91633 0.89043 0.86807 0.84298 0.88761 0.87908 0.91755 0.90382 0.93678 0.92605 0.90678 0.91806 0.93550 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.97 71.98 0.65 -5.83 16 2 C 0.26 14.20 2.64 44.25 0.12 14.31 16 3 H 0.00 0.17 6.90 -2.39 -0.02 0.15 16 4 C -0.54 -30.46 7.99 25.60 0.20 -30.26 16 5 H 0.06 3.30 7.33 -2.91 -0.02 3.28 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.78 11.32 21.45 0.24 -54.54 16 8 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.61 -26.72 2.75 -826.77 -2.28 -28.99 16 13 C 0.08 2.51 9.24 127.77 1.18 3.69 16 14 C 0.49 21.37 7.60 87.66 0.67 22.03 16 15 O -0.60 -33.08 14.94 4.75 0.07 -33.01 16 16 C -0.12 -3.46 4.02 29.85 0.12 -3.34 16 17 C 0.09 2.55 2.77 31.28 0.09 2.64 16 18 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 19 C -0.13 -2.34 5.71 31.96 0.18 -2.15 16 20 C -0.10 -1.72 0.99 -51.13 -0.05 -1.77 16 21 C -0.14 -2.08 8.25 71.98 0.59 -1.48 16 22 C -0.13 -1.74 8.28 71.98 0.60 -1.14 16 23 C 0.04 1.10 7.03 72.35 0.51 1.61 16 24 O -0.40 -14.21 10.75 -141.21 -1.52 -15.73 16 25 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 28 H 0.26 14.83 8.31 -92.70 -0.77 14.05 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 2.27 7.02 -2.39 -0.02 2.25 16 31 H 0.09 2.17 6.44 -2.38 -0.02 2.15 16 32 H 0.11 2.85 7.40 -2.39 -0.02 2.83 16 33 H 0.14 2.79 8.11 -2.39 -0.02 2.77 16 34 H 0.09 1.44 7.79 -2.39 -0.02 1.42 16 35 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 43 H 0.09 2.02 7.70 -2.38 -0.02 2.00 16 Total: -1.00 -77.43 338.80 4.81 -72.62 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.96 Total: 13.74 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.30 Total: -0.53 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -2.03 Total: -83.53 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.45 Total: -48.74 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -77.43 4.81 -72.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717059008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.342 kcal (2) G-P(sol) polarization free energy of solvation -77.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds