Wall clock time and date at job start Mon Mar 30 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 O 1.21278 * 119.99818 * 240.00149 * 4 2 1 6 6 N 1.34777 * 119.99991 * 60.00288 * 4 2 1 7 7 C 1.46499 * 119.99824 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46911 * 299.99527 * 8 7 6 10 10 C 1.52996 * 109.46969 * 59.99789 * 8 7 6 11 11 C 1.50703 * 109.47292 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99742 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99573 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47603 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47016 * 120.00240 * 15 13 11 18 18 H 1.48501 * 109.46756 * 239.99593 * 15 13 11 19 19 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 20 20 H 1.08999 * 109.87151 * 179.29609 * 19 2 1 21 21 C 1.54109 * 109.87482 * 300.30353 * 19 2 1 22 22 C 1.54807 * 104.18480 * 121.45433 * 21 19 2 23 23 C 1.54997 * 102.09709 * 20.87653 * 22 21 19 24 24 O 1.43740 * 109.87700 * 58.28729 * 19 2 1 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 0.96998 * 120.00094 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47041 * 299.99672 * 7 6 4 30 30 H 1.09002 * 109.47391 * 59.99855 * 7 6 4 31 31 H 1.09004 * 109.46724 * 60.00450 * 9 8 7 32 32 H 1.09001 * 109.47194 * 179.97438 * 9 8 7 33 33 H 1.08992 * 109.47852 * 300.00248 * 9 8 7 34 34 H 1.08992 * 109.47534 * 60.00418 * 10 8 7 35 35 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47054 * 300.00097 * 10 8 7 37 37 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 38 38 H 1.08997 * 110.48247 * 240.12846 * 21 19 2 39 39 H 1.09001 * 110.48650 * 2.64413 * 21 19 2 40 40 H 1.08999 * 110.90754 * 139.08119 * 22 21 19 41 41 H 1.09001 * 110.90707 * 262.64117 * 22 21 19 42 42 H 1.09001 * 110.61665 * 81.47633 * 23 22 21 43 43 H 1.08997 * 110.61892 * 204.31777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6842 -0.2200 -4.9000 9 6 0.1542 -0.2200 -4.8995 10 6 2.1943 1.2224 -4.9005 11 6 2.1865 -0.9304 -6.1305 12 1 2.8080 -1.8081 -6.0314 13 6 1.8527 -0.4599 -7.3827 14 7 1.0955 0.6086 -7.5034 15 14 2.4748 -1.3409 -8.9079 16 1 3.3007 -2.5069 -8.5038 17 1 1.3194 -1.8082 -9.7155 18 1 3.2991 -0.4076 -9.7170 19 6 2.0400 -0.7213 1.2492 20 1 3.1299 -0.7360 1.2495 21 6 1.5252 -0.0066 2.5138 22 6 0.7285 -1.0982 3.2688 23 6 1.3134 -2.4016 2.6674 24 8 1.5330 -2.0660 1.2784 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.1488 0.5385 -2.5436 29 1 3.2846 -0.9414 -3.6509 30 1 1.8308 -1.9685 -3.6506 31 1 -0.2088 0.2942 -4.0095 32 1 -0.2095 0.2941 -5.7892 33 1 -0.2093 -1.2475 -4.8990 34 1 3.2842 1.2224 -4.9010 35 1 1.8303 1.7362 -5.7903 36 1 1.8313 1.7365 -4.0105 37 1 0.8609 0.9398 -8.3844 38 1 2.3602 0.3445 3.1201 39 1 0.8747 0.8253 2.2437 40 1 0.9170 -1.0458 4.3411 41 1 -0.3380 -1.0167 3.0588 42 1 2.2555 -2.6586 3.1517 43 1 0.6000 -3.2206 2.7593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720624003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:07 Heat of formation + Delta-G solvation = -100.215021 kcal Electronic energy + Delta-G solvation = -21657.901731 eV Core-core repulsion = 18509.540924 eV Total energy + Delta-G solvation = -3148.360808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12895 -38.60557 -36.26329 -33.79222 -33.02385 -31.95880 -30.70727 -28.09573 -25.76356 -25.68917 -25.18001 -24.20652 -22.17671 -20.95139 -19.44619 -18.72790 -17.10345 -16.26048 -15.99427 -15.71527 -15.42058 -14.76305 -14.59743 -14.38312 -13.86320 -13.43007 -13.22063 -12.92034 -12.74338 -12.16191 -12.11798 -11.99839 -11.71585 -11.52549 -11.33143 -11.21928 -11.15792 -11.04471 -10.83313 -10.73021 -10.62931 -10.34596 -10.17113 -9.59606 -9.57739 -9.40196 -9.06330 -8.73328 -8.39877 -8.20461 -5.99405 -4.09072 3.22006 3.29074 3.37537 3.42636 3.76740 3.93093 4.39435 4.42790 4.62689 4.79476 4.89227 5.04575 5.12480 5.21839 5.27396 5.32088 5.49420 5.55742 5.61603 5.66173 5.81609 5.85921 5.91999 6.01004 6.26754 6.31289 6.39999 6.55744 6.85278 6.86237 6.96887 7.00193 7.06373 7.14321 7.40418 7.59223 7.72622 8.04424 8.13951 8.24366 8.42643 8.85953 8.93233 9.56642 11.02010 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.003844 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.428667 B = 7282.371530 C = 7525.120654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.102 0.898 4 C 0.509 3.491 5 O -0.539 6.539 6 N -0.719 5.719 7 C 0.133 3.867 8 C 0.055 3.945 9 C -0.129 4.129 10 C -0.130 4.130 11 C -0.504 4.504 12 H 0.058 0.942 13 C 0.065 3.935 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.099 3.901 20 H 0.072 0.928 21 C -0.155 4.155 22 C -0.154 4.154 23 C 0.042 3.958 24 O -0.349 6.349 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.396 0.604 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.006 0.994 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.006 0.994 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 2.197 18.784 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 H 0.120 0.880 4 C 0.294 3.706 5 O -0.416 6.416 6 N -0.371 5.371 7 C 0.010 3.990 8 C 0.054 3.946 9 C -0.187 4.187 10 C -0.187 4.187 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.040 3.960 20 H 0.090 0.910 21 C -0.192 4.192 22 C -0.192 4.192 23 C -0.035 4.035 24 O -0.268 6.268 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.025 0.975 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.191 1.451 18.499 18.685 hybrid contribution 0.109 0.123 -0.730 0.749 sum -2.083 1.574 17.769 17.960 Atomic orbital electron populations 1.21737 0.92667 1.03398 1.02063 1.21552 0.98304 1.00104 0.93482 0.88042 1.20320 0.80825 0.84905 0.84583 1.90684 1.38114 1.26023 1.86756 1.46297 1.52924 1.31819 1.06014 1.21665 0.97965 0.95777 0.83547 1.18361 0.92795 0.92740 0.90673 1.21813 0.97771 0.99142 0.99986 1.21817 0.98530 0.98390 1.00003 1.21046 1.31226 1.12057 0.89925 0.92415 1.24878 0.94896 0.94944 0.98837 1.69814 1.36785 1.22887 1.23042 0.86525 0.78633 0.79774 0.83018 1.19757 1.21075 1.21094 1.22429 0.98039 0.82740 0.92785 0.91041 1.23083 1.00518 0.99203 0.96430 1.23117 1.00709 0.95198 1.00132 1.23560 0.99619 0.97162 0.83209 1.89119 1.85405 1.28913 1.23323 0.91304 0.91891 0.91988 0.76949 0.92947 0.92897 0.97530 0.89666 0.95483 0.95501 0.89657 0.97538 0.93120 0.90707 0.89970 0.90544 0.90552 0.92509 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.67 37.16 0.32 -1.30 16 2 C -0.11 -1.48 2.52 -91.77 -0.23 -1.71 16 3 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.51 9.22 7.02 -10.98 -0.08 9.14 16 5 O -0.54 -11.96 15.37 -11.29 -0.17 -12.13 16 6 N -0.72 -13.26 4.85 -60.29 -0.29 -13.55 16 7 C 0.13 2.94 4.50 -4.04 -0.02 2.92 16 8 C 0.05 1.30 0.50 -155.66 -0.08 1.22 16 9 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 10 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 11 C -0.50 -13.44 8.01 -34.44 -0.28 -13.72 16 12 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 13 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 14 N -0.89 -23.82 9.35 55.43 0.52 -23.31 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.10 1.26 2.66 -26.15 -0.07 1.19 16 20 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 21 C -0.15 -1.35 6.14 -25.20 -0.15 -1.51 16 22 C -0.15 -1.25 7.16 -24.72 -0.18 -1.42 16 23 C 0.04 0.43 7.72 38.21 0.29 0.73 16 24 O -0.35 -5.24 9.52 -52.08 -0.50 -5.74 16 25 H 0.07 0.92 7.66 -51.93 -0.40 0.52 16 26 H 0.06 0.56 6.39 -51.93 -0.33 0.23 16 27 H 0.06 0.69 7.56 -51.93 -0.39 0.30 16 28 H 0.40 6.55 5.58 -40.82 -0.23 6.32 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 32 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.63 6.23 -51.93 -0.32 0.31 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -30.37 331.02 -7.64 -38.01 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.21 Total: 3.91 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.04 Total: -8.13 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.23 Total: -36.86 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.67 Total: -17.87 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.37 -7.64 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720624003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.207 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds