Wall clock time and date at job start Mon Mar 30 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 O 1.21278 * 119.99818 * 240.00149 * 4 2 1 6 6 N 1.34777 * 119.99991 * 60.00288 * 4 2 1 7 7 C 1.46499 * 119.99824 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47125 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46911 * 299.99527 * 8 7 6 10 10 C 1.52996 * 109.46969 * 59.99789 * 8 7 6 11 11 C 1.50703 * 109.47292 * 179.97438 * 8 7 6 12 12 H 1.08003 * 119.99742 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 8 7 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99573 * 180.02562 * 13 11 8 16 16 H 1.48492 * 109.47603 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47016 * 120.00240 * 15 13 11 18 18 H 1.48501 * 109.46756 * 239.99593 * 15 13 11 19 19 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 20 20 H 1.08999 * 109.87151 * 179.29609 * 19 2 1 21 21 C 1.54109 * 109.87482 * 300.30353 * 19 2 1 22 22 C 1.54807 * 104.18480 * 121.45433 * 21 19 2 23 23 C 1.54997 * 102.09709 * 20.87653 * 22 21 19 24 24 O 1.43740 * 109.87700 * 58.28729 * 19 2 1 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 0.96998 * 120.00094 * 359.97438 * 6 4 2 29 29 H 1.09004 * 109.47041 * 299.99672 * 7 6 4 30 30 H 1.09002 * 109.47391 * 59.99855 * 7 6 4 31 31 H 1.09004 * 109.46724 * 60.00450 * 9 8 7 32 32 H 1.09001 * 109.47194 * 179.97438 * 9 8 7 33 33 H 1.08992 * 109.47852 * 300.00248 * 9 8 7 34 34 H 1.08992 * 109.47534 * 60.00418 * 10 8 7 35 35 H 1.09001 * 109.46997 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47054 * 300.00097 * 10 8 7 37 37 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 38 38 H 1.08997 * 110.48247 * 240.12846 * 21 19 2 39 39 H 1.09001 * 110.48650 * 2.64413 * 21 19 2 40 40 H 1.08999 * 110.90754 * 139.08119 * 22 21 19 41 41 H 1.09001 * 110.90707 * 262.64117 * 22 21 19 42 42 H 1.09001 * 110.61665 * 81.47633 * 23 22 21 43 43 H 1.08997 * 110.61892 * 204.31777 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6842 -0.2200 -4.9000 9 6 0.1542 -0.2200 -4.8995 10 6 2.1943 1.2224 -4.9005 11 6 2.1865 -0.9304 -6.1305 12 1 2.8080 -1.8081 -6.0314 13 6 1.8527 -0.4599 -7.3827 14 7 1.0955 0.6086 -7.5034 15 14 2.4748 -1.3409 -8.9079 16 1 3.3007 -2.5069 -8.5038 17 1 1.3194 -1.8082 -9.7155 18 1 3.2991 -0.4076 -9.7170 19 6 2.0400 -0.7213 1.2492 20 1 3.1299 -0.7360 1.2495 21 6 1.5252 -0.0066 2.5138 22 6 0.7285 -1.0982 3.2688 23 6 1.3134 -2.4016 2.6674 24 8 1.5330 -2.0660 1.2784 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.1488 0.5385 -2.5436 29 1 3.2846 -0.9414 -3.6509 30 1 1.8308 -1.9685 -3.6506 31 1 -0.2088 0.2942 -4.0095 32 1 -0.2095 0.2941 -5.7892 33 1 -0.2093 -1.2475 -4.8990 34 1 3.2842 1.2224 -4.9010 35 1 1.8303 1.7362 -5.7903 36 1 1.8313 1.7365 -4.0105 37 1 0.8609 0.9398 -8.3844 38 1 2.3602 0.3445 3.1201 39 1 0.8747 0.8253 2.2437 40 1 0.9170 -1.0458 4.3411 41 1 -0.3380 -1.0167 3.0588 42 1 2.2555 -2.6586 3.1517 43 1 0.6000 -3.2206 2.7593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720624003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:07 Heat of formation + Delta-G solvation = -118.660832 kcal Electronic energy + Delta-G solvation = -21658.701602 eV Core-core repulsion = 18509.540924 eV Total energy + Delta-G solvation = -3149.160678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29187 -39.86904 -38.05509 -35.13524 -34.56573 -32.82530 -32.47585 -28.98390 -27.56471 -27.50311 -26.93554 -25.40928 -23.09932 -21.96516 -20.73973 -20.55971 -18.41054 -17.76192 -17.22877 -16.99555 -16.64007 -16.41882 -15.99587 -15.83416 -14.99536 -14.78584 -14.52542 -14.48407 -14.14345 -13.94941 -13.28034 -13.15032 -13.04609 -12.84395 -12.67165 -12.58966 -12.48208 -12.38521 -12.24482 -12.14086 -12.06316 -11.88355 -11.48693 -11.42515 -11.24726 -10.74198 -10.56367 -10.51677 -10.40288 -9.88169 -8.02942 -6.18589 1.40404 1.44360 1.54158 1.79863 2.35135 2.51257 3.04220 3.20329 3.61837 3.77086 3.95600 4.04564 4.13554 4.15595 4.41963 4.46505 4.46901 4.51268 4.68960 4.74540 4.82425 4.87759 4.95810 4.98644 5.00113 5.01905 5.06080 5.12841 5.19040 5.19588 5.28690 5.37218 5.39503 5.63651 5.66700 5.67228 6.12443 6.15172 6.21535 6.43607 6.75158 6.85336 7.42773 7.49049 8.96100 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.003844 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.428667 B = 7282.371530 C = 7525.120654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.134 0.866 4 C 0.503 3.497 5 O -0.585 6.585 6 N -0.712 5.712 7 C 0.149 3.851 8 C 0.051 3.949 9 C -0.119 4.119 10 C -0.119 4.119 11 C -0.530 4.530 12 H 0.041 0.959 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.945 3.055 16 H -0.278 1.278 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.090 3.910 20 H 0.050 0.950 21 C -0.145 4.145 22 C -0.144 4.144 23 C 0.030 3.970 24 O -0.391 6.391 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.408 0.592 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.014 0.986 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 3.853 20.575 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.152 0.848 4 C 0.291 3.709 5 O -0.465 6.465 6 N -0.364 5.364 7 C 0.025 3.975 8 C 0.050 3.950 9 C -0.176 4.176 10 C -0.177 4.177 11 C -0.569 4.569 12 H 0.059 0.941 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.032 3.968 20 H 0.068 0.932 21 C -0.183 4.183 22 C -0.182 4.182 23 C -0.046 4.046 24 O -0.311 6.311 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.245 0.755 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.226 3.134 20.305 20.798 hybrid contribution 0.451 -0.448 -1.267 1.417 sum -2.776 2.686 19.039 19.427 Atomic orbital electron populations 1.21736 0.91001 1.02530 1.04053 1.21655 0.99470 1.00920 0.90574 0.84791 1.21338 0.79602 0.84368 0.85619 1.90662 1.40165 1.28288 1.87430 1.46137 1.53063 1.31956 1.05256 1.21201 0.96703 0.94847 0.84738 1.18362 0.93307 0.93142 0.90165 1.21650 0.97036 0.98495 1.00451 1.21650 0.97857 0.97667 1.00489 1.21304 1.31669 1.12143 0.91746 0.94096 1.25436 0.95124 0.95614 1.00893 1.69904 1.36902 1.23287 1.23563 0.85710 0.78161 0.78712 0.80237 1.20243 1.20600 1.20532 1.22550 0.97034 0.82674 0.94558 0.93223 1.23067 1.01404 0.99354 0.94428 1.23100 1.00748 0.93115 1.01224 1.23794 1.00202 0.98951 0.81700 1.89082 1.85590 1.30336 1.26048 0.93595 0.88460 0.91428 0.75498 0.94787 0.95198 0.94327 0.91774 0.96644 0.96403 0.91809 0.94257 0.92977 0.89178 0.88003 0.88199 0.89906 0.92352 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.67 71.98 0.62 -2.09 16 2 C -0.11 -2.52 2.52 -11.54 -0.03 -2.55 16 3 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.50 18.05 7.02 87.66 0.62 18.67 16 5 O -0.59 -26.74 15.37 13.09 0.20 -26.54 16 6 N -0.71 -25.70 4.85 -463.05 -2.25 -27.94 16 7 C 0.15 6.71 4.50 86.38 0.39 7.10 16 8 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 9 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 10 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 11 C -0.53 -28.84 8.01 25.60 0.21 -28.63 16 12 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 13 C 0.03 1.56 5.15 84.65 0.44 1.99 16 14 N -0.90 -48.22 9.35 21.44 0.20 -48.02 16 15 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 C 0.09 2.17 2.66 30.97 0.08 2.26 16 20 H 0.05 1.37 8.09 -2.39 -0.02 1.35 16 21 C -0.15 -2.02 6.14 31.59 0.19 -1.83 16 22 C -0.14 -1.87 7.16 31.89 0.23 -1.64 16 23 C 0.03 0.59 7.72 72.67 0.56 1.15 16 24 O -0.39 -11.67 9.52 -132.87 -1.27 -12.94 16 25 H 0.04 1.14 7.66 -2.39 -0.02 1.12 16 26 H 0.10 1.29 6.39 -2.39 -0.02 1.27 16 27 H 0.07 1.27 7.56 -2.39 -0.02 1.25 16 28 H 0.41 12.55 5.58 -92.71 -0.52 12.03 16 29 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 36 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 37 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.04 6.23 -2.39 -0.01 1.02 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -67.95 331.02 3.83 -64.12 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.47 Total: 18.70 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.44 Total: -12.72 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -2.05 Total: -75.96 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.06 Total: -39.48 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.95 3.83 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720624003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.538 kcal (2) G-P(sol) polarization free energy of solvation -67.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds