Wall clock time and date at job start Mon Mar 30 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99950 * 2 1 4 4 C 1.53002 * 109.47013 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47070 * 65.00236 * 4 3 2 6 6 C 1.36930 * 119.99979 * 89.99678 * 5 4 3 7 7 H 1.08007 * 120.00085 * 213.64037 * 6 5 4 8 8 C 1.38810 * 120.00115 * 33.64682 * 6 5 4 9 9 N 1.31622 * 120.00150 * 23.04243 * 8 6 5 10 10 Si 1.86801 * 119.99880 * 203.04117 * 8 6 5 11 11 H 1.48503 * 109.47272 * 269.99714 * 10 8 6 12 12 H 1.48499 * 109.47229 * 30.00259 * 10 8 6 13 13 H 1.48505 * 109.46796 * 150.00104 * 10 8 6 14 14 C 1.46501 * 119.99527 * 269.99673 * 5 4 3 15 15 C 1.52999 * 109.47150 * 265.54957 * 14 5 4 16 16 H 1.08997 * 110.33398 * 305.70485 * 15 14 5 17 17 C 1.54439 * 110.37017 * 183.44881 * 15 14 5 18 18 C 1.54275 * 104.15895 * 216.25367 * 17 15 14 19 19 H 1.09004 * 112.75323 * 238.24965 * 18 17 15 20 20 C 1.54655 * 108.82621 * 112.37106 * 18 17 15 21 21 C 1.54843 * 102.92933 * 211.69335 * 20 18 17 22 22 C 1.54207 * 104.19278 * 38.08749 * 21 20 18 23 23 C 1.53802 * 106.77820 * 336.02968 * 22 21 20 24 24 H 1.09003 * 111.85354 * 238.04682 * 23 22 21 25 25 O 1.44290 * 110.37168 * 67.96140 * 15 14 5 26 26 H 1.09007 * 109.46891 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47149 * 59.99776 * 1 2 3 28 28 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47405 * 60.00294 * 3 2 1 30 30 H 1.08998 * 109.47130 * 299.99820 * 3 2 1 31 31 H 1.08997 * 109.47385 * 305.00162 * 4 3 2 32 32 H 1.09002 * 109.46925 * 184.99976 * 4 3 2 33 33 H 0.96995 * 119.99909 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47240 * 25.55629 * 14 5 4 35 35 H 1.09005 * 109.46919 * 145.55340 * 14 5 4 36 36 H 1.08993 * 110.49314 * 334.92295 * 17 15 14 37 37 H 1.08997 * 110.49259 * 97.59077 * 17 15 14 38 38 H 1.08996 * 110.72715 * 330.05802 * 20 18 17 39 39 H 1.09002 * 110.71837 * 93.33515 * 20 18 17 40 40 H 1.08991 * 110.48318 * 156.76689 * 21 20 18 41 41 H 1.08998 * 110.48748 * 279.27957 * 21 20 18 42 42 H 1.09002 * 109.99458 * 95.35673 * 22 21 20 43 43 H 1.08998 * 109.99898 * 216.65152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2660 1.3461 -2.3389 7 1 4.0625 0.9829 -3.3356 8 6 4.8220 2.6052 -2.1592 9 7 5.4801 2.8824 -1.0535 10 14 4.6361 3.9064 -3.4866 11 1 5.7748 3.8120 -4.4352 12 1 3.3626 3.6885 -4.2185 13 1 4.6234 5.2532 -2.8611 14 6 4.1052 -0.8921 -1.3428 15 6 5.5513 -1.2947 -1.0467 16 1 6.2362 -0.7548 -1.7004 17 6 5.7312 -2.8187 -1.2203 18 6 6.7311 -3.2093 -0.1122 19 1 7.6313 -3.6826 -0.5044 20 6 6.0012 -4.0857 0.9323 21 6 6.7258 -3.7268 2.2528 22 6 6.9937 -2.2125 2.1376 23 6 7.0077 -1.8770 0.6367 24 1 7.9516 -1.4259 0.3306 25 8 5.8707 -1.0389 0.3370 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 5.8682 3.7623 -0.9278 34 1 3.4414 -1.3614 -0.6168 35 1 3.8352 -1.2195 -2.3468 36 1 4.7816 -3.3340 -1.0763 37 1 6.1439 -3.0447 -2.2035 38 1 4.9453 -3.8211 0.9876 39 1 6.1231 -5.1438 0.7007 40 1 6.0848 -3.9368 3.1089 41 1 7.6633 -4.2768 2.3352 42 1 6.2012 -1.6548 2.6368 43 1 7.9580 -1.9695 2.5836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720873739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:56 Heat of formation + Delta-G solvation = -79.144906 kcal Electronic energy + Delta-G solvation = -22260.634416 eV Core-core repulsion = 19113.187277 eV Total energy + Delta-G solvation = -3147.447139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.64185 -37.22148 -35.59693 -34.39443 -31.85323 -31.01193 -29.21205 -27.44289 -27.19206 -25.61009 -24.54466 -22.73528 -20.86318 -20.52992 -19.55998 -19.38993 -16.64554 -16.38297 -15.54505 -15.25154 -15.03609 -14.89086 -14.47776 -14.08026 -13.90628 -13.50419 -13.25525 -12.88014 -12.77051 -12.07139 -11.79175 -11.56084 -11.21340 -11.14024 -11.01848 -10.93822 -10.71694 -10.65808 -10.59491 -10.46861 -10.39727 -10.22804 -10.10319 -9.82187 -9.77614 -9.62125 -8.83900 -8.77420 -8.39813 -6.48371 -5.68478 -3.21013 3.38973 3.46982 3.50318 4.42611 4.56060 4.66264 4.78773 4.86782 5.23713 5.38186 5.40942 5.46867 5.56136 5.65523 5.71380 5.76491 5.79400 5.80048 5.89540 6.00277 6.02032 6.09145 6.12073 6.16478 6.30304 6.31707 6.36928 6.45944 6.47609 6.56052 6.59447 6.66707 6.77523 6.88996 7.18432 7.24068 7.74047 7.84553 7.92320 8.04318 8.58516 9.28848 9.93840 10.53388 11.30638 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006690 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.449712 B = 4184.190360 C = 5140.054374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.043 3.957 4 C 0.149 3.851 5 N -0.571 5.571 6 C -0.255 4.255 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.883 5.883 10 Si 0.891 3.109 11 H -0.287 1.287 12 H -0.280 1.280 13 H -0.290 1.290 14 C 0.159 3.841 15 C 0.062 3.938 16 H 0.065 0.935 17 C -0.148 4.148 18 C -0.125 4.125 19 H 0.083 0.917 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.121 4.121 23 C 0.072 3.928 24 H 0.066 0.934 25 O -0.344 6.344 26 H 0.028 0.972 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.111 0.889 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -10.822 4.440 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.036 4.036 4 C 0.023 3.977 5 N -0.289 5.289 6 C -0.385 4.385 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.214 1.214 12 H -0.205 1.205 13 H -0.216 1.216 14 C 0.032 3.968 15 C 0.002 3.998 16 H 0.083 0.917 17 C -0.186 4.186 18 C -0.143 4.143 19 H 0.101 0.899 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.158 4.158 23 C 0.013 3.987 24 H 0.083 0.917 25 O -0.263 6.263 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.938 -10.666 4.636 11.668 hybrid contribution -0.072 0.918 -0.872 1.269 sum -1.011 -9.748 3.763 10.498 Atomic orbital electron populations 1.22593 0.83778 1.01199 0.98895 1.87953 1.17357 1.29771 1.95129 1.23597 0.99089 0.83104 0.97802 1.21104 0.86848 1.02075 0.87724 1.43654 1.75009 0.99758 1.10519 1.19086 1.34826 0.97538 0.87023 0.92258 1.25061 0.97104 1.00094 0.97095 1.69997 1.34437 1.21140 1.27013 0.86482 0.78070 0.81618 0.81727 1.21439 1.20548 1.21603 1.20985 0.90755 0.86538 0.98516 1.23888 1.01377 0.91153 0.83430 0.91749 1.23080 0.98941 0.98601 0.98002 1.23234 0.98294 0.96813 0.95992 0.89858 1.22538 0.99873 0.98470 0.94222 1.22344 0.99872 0.95868 0.97849 1.22172 1.02060 0.95891 0.95702 1.23413 0.91310 0.89598 0.94361 0.91654 1.89228 1.46080 1.63708 1.27253 0.95356 0.94966 0.90941 0.95683 0.93860 0.94258 0.87190 0.93727 0.92747 0.93448 0.91068 0.91774 0.90877 0.92147 0.91872 0.92086 0.90394 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.38 -7.87 9.61 -35.23 -0.34 -8.21 16 3 C 0.04 0.92 6.28 37.16 0.23 1.15 16 4 C 0.15 3.69 5.68 -4.04 -0.02 3.67 16 5 N -0.57 -14.53 2.42 -173.24 -0.42 -14.95 16 6 C -0.25 -6.98 9.49 -15.06 -0.14 -7.13 16 7 H 0.06 1.62 7.93 -52.48 -0.42 1.21 16 8 C 0.01 0.17 4.95 -17.43 -0.09 0.08 16 9 N -0.88 -25.47 11.30 55.49 0.63 -24.84 16 10 Si 0.89 21.59 29.61 -169.99 -5.03 16.55 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.16 3.54 5.06 -4.04 -0.02 3.52 16 15 C 0.06 1.28 3.51 -25.98 -0.09 1.19 16 16 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 17 C -0.15 -2.37 6.15 -25.31 -0.16 -2.53 16 18 C -0.12 -1.81 4.01 -87.85 -0.35 -2.17 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.11 -1.47 6.19 -24.89 -0.15 -1.62 16 21 C -0.12 -1.48 6.83 -25.13 -0.17 -1.65 16 22 C -0.12 -1.76 6.57 -25.68 -0.17 -1.93 16 23 C 0.07 1.23 4.22 -25.08 -0.11 1.12 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 O -0.34 -7.43 10.42 -35.23 -0.37 -7.80 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.99 7.69 -51.93 -0.40 0.59 16 32 H 0.11 3.02 5.29 -51.93 -0.27 2.74 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 35 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.07 1.09 7.13 -51.93 -0.37 0.72 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -29.84 337.62 -8.26 -38.10 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.69 Total: 0.73 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.13 Total: -4.66 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.21 Total: -39.79 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.71 Total: -16.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.84 -8.26 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720873739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.048 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds