Wall clock time and date at job start Mon Mar 30 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99950 * 2 1 4 4 C 1.53002 * 109.47013 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47070 * 65.00236 * 4 3 2 6 6 C 1.36930 * 119.99979 * 89.99678 * 5 4 3 7 7 H 1.08007 * 120.00085 * 213.64037 * 6 5 4 8 8 C 1.38810 * 120.00115 * 33.64682 * 6 5 4 9 9 N 1.31622 * 120.00150 * 23.04243 * 8 6 5 10 10 Si 1.86801 * 119.99880 * 203.04117 * 8 6 5 11 11 H 1.48503 * 109.47272 * 269.99714 * 10 8 6 12 12 H 1.48499 * 109.47229 * 30.00259 * 10 8 6 13 13 H 1.48505 * 109.46796 * 150.00104 * 10 8 6 14 14 C 1.46501 * 119.99527 * 269.99673 * 5 4 3 15 15 C 1.52999 * 109.47150 * 265.54957 * 14 5 4 16 16 H 1.08997 * 110.33398 * 305.70485 * 15 14 5 17 17 C 1.54439 * 110.37017 * 183.44881 * 15 14 5 18 18 C 1.54275 * 104.15895 * 216.25367 * 17 15 14 19 19 H 1.09004 * 112.75323 * 238.24965 * 18 17 15 20 20 C 1.54655 * 108.82621 * 112.37106 * 18 17 15 21 21 C 1.54843 * 102.92933 * 211.69335 * 20 18 17 22 22 C 1.54207 * 104.19278 * 38.08749 * 21 20 18 23 23 C 1.53802 * 106.77820 * 336.02968 * 22 21 20 24 24 H 1.09003 * 111.85354 * 238.04682 * 23 22 21 25 25 O 1.44290 * 110.37168 * 67.96140 * 15 14 5 26 26 H 1.09007 * 109.46891 * 299.99777 * 1 2 3 27 27 H 1.09001 * 109.47149 * 59.99776 * 1 2 3 28 28 H 1.09000 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47405 * 60.00294 * 3 2 1 30 30 H 1.08998 * 109.47130 * 299.99820 * 3 2 1 31 31 H 1.08997 * 109.47385 * 305.00162 * 4 3 2 32 32 H 1.09002 * 109.46925 * 184.99976 * 4 3 2 33 33 H 0.96995 * 119.99909 * 180.02562 * 9 8 6 34 34 H 1.08993 * 109.47240 * 25.55629 * 14 5 4 35 35 H 1.09005 * 109.46919 * 145.55340 * 14 5 4 36 36 H 1.08993 * 110.49314 * 334.92295 * 17 15 14 37 37 H 1.08997 * 110.49259 * 97.59077 * 17 15 14 38 38 H 1.08996 * 110.72715 * 330.05802 * 20 18 17 39 39 H 1.09002 * 110.71837 * 93.33515 * 20 18 17 40 40 H 1.08991 * 110.48318 * 156.76689 * 21 20 18 41 41 H 1.08998 * 110.48748 * 279.27957 * 21 20 18 42 42 H 1.09002 * 109.99458 * 95.35673 * 22 21 20 43 43 H 1.08998 * 109.99898 * 216.65152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2660 1.3461 -2.3389 7 1 4.0625 0.9829 -3.3356 8 6 4.8220 2.6052 -2.1592 9 7 5.4801 2.8824 -1.0535 10 14 4.6361 3.9064 -3.4866 11 1 5.7748 3.8120 -4.4352 12 1 3.3626 3.6885 -4.2185 13 1 4.6234 5.2532 -2.8611 14 6 4.1052 -0.8921 -1.3428 15 6 5.5513 -1.2947 -1.0467 16 1 6.2362 -0.7548 -1.7004 17 6 5.7312 -2.8187 -1.2203 18 6 6.7311 -3.2093 -0.1122 19 1 7.6313 -3.6826 -0.5044 20 6 6.0012 -4.0857 0.9323 21 6 6.7258 -3.7268 2.2528 22 6 6.9937 -2.2125 2.1376 23 6 7.0077 -1.8770 0.6367 24 1 7.9516 -1.4259 0.3306 25 8 5.8707 -1.0389 0.3370 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1765 0.0889 33 1 5.8682 3.7623 -0.9278 34 1 3.4414 -1.3614 -0.6168 35 1 3.8352 -1.2195 -2.3468 36 1 4.7816 -3.3340 -1.0763 37 1 6.1439 -3.0447 -2.2035 38 1 4.9453 -3.8211 0.9876 39 1 6.1231 -5.1438 0.7007 40 1 6.0848 -3.9368 3.1089 41 1 7.6633 -4.2768 2.3352 42 1 6.2012 -1.6548 2.6368 43 1 7.9580 -1.9695 2.5836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720873739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:55 Heat of formation + Delta-G solvation = -96.867775 kcal Electronic energy + Delta-G solvation = -22261.402937 eV Core-core repulsion = 19113.187277 eV Total energy + Delta-G solvation = -3148.215660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01828 -38.87696 -37.25979 -35.92796 -33.59184 -32.75101 -30.85359 -28.98580 -28.50529 -27.07062 -26.27339 -24.43205 -22.52495 -21.98538 -21.03104 -20.72055 -18.63396 -17.70347 -17.24193 -16.80701 -16.66088 -16.52196 -16.05156 -15.63603 -15.37517 -15.05931 -14.85848 -14.34898 -14.21935 -13.58605 -13.31400 -13.20558 -13.00763 -12.68336 -12.55771 -12.43946 -12.39643 -12.15588 -11.96757 -11.87630 -11.83862 -11.72013 -11.61949 -11.48104 -11.41969 -11.21812 -10.51301 -10.42415 -10.33808 -8.54154 -7.77675 -5.34450 1.45162 1.47830 1.57569 2.53049 3.09068 3.12782 3.28127 3.61105 3.63708 3.75133 4.03977 4.25634 4.28495 4.36599 4.42935 4.49609 4.53489 4.60962 4.63009 4.66066 4.68268 4.75219 4.77821 4.83559 4.84694 4.86571 4.99876 5.07282 5.11481 5.15539 5.20493 5.25411 5.29940 5.38155 5.42640 5.56057 5.65054 5.79403 6.35326 6.45661 6.48830 7.19530 7.91118 8.46805 9.18784 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006690 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.449712 B = 4184.190360 C = 5140.054374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.058 3.942 4 C 0.154 3.846 5 N -0.584 5.584 6 C -0.264 4.264 7 H 0.056 0.944 8 C -0.040 4.040 9 N -0.914 5.914 10 Si 0.955 3.045 11 H -0.286 1.286 12 H -0.273 1.273 13 H -0.291 1.291 14 C 0.162 3.838 15 C 0.064 3.936 16 H 0.024 0.976 17 C -0.137 4.137 18 C -0.115 4.115 19 H 0.108 0.892 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.120 4.120 23 C 0.054 3.946 24 H 0.054 0.946 25 O -0.379 6.379 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.097 0.903 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -12.815 4.466 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.020 4.020 4 C 0.028 3.972 5 N -0.304 5.304 6 C -0.394 4.394 7 H 0.074 0.926 8 C -0.237 4.237 9 N -0.558 5.558 10 Si 0.783 3.217 11 H -0.212 1.212 12 H -0.198 1.198 13 H -0.217 1.217 14 C 0.035 3.965 15 C 0.004 3.996 16 H 0.042 0.958 17 C -0.176 4.176 18 C -0.134 4.134 19 H 0.126 0.874 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.003 4.003 24 H 0.072 0.928 25 O -0.298 6.298 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.440 -12.686 4.660 13.592 hybrid contribution 0.056 1.507 -0.842 1.728 sum -1.384 -11.179 3.818 11.894 Atomic orbital electron populations 1.22853 0.80913 1.03260 0.99943 1.87892 1.20392 1.28756 1.95314 1.23186 0.96851 0.83912 0.98093 1.20876 0.89141 1.00074 0.87142 1.43819 1.75462 1.00911 1.10174 1.19299 1.34369 0.98248 0.87499 0.92586 1.25737 0.97045 1.01772 0.99154 1.70149 1.35555 1.21215 1.28900 0.85482 0.78060 0.78888 0.79227 1.21234 1.19806 1.21680 1.21008 0.91876 0.84924 0.98666 1.23625 0.99025 0.94139 0.82791 0.95760 1.22999 1.00260 0.94693 0.99617 1.23263 0.98972 0.95664 0.95485 0.87363 1.22525 0.98648 0.99675 0.93883 1.22335 1.01219 0.93618 0.97870 1.22184 1.02043 0.97906 0.93594 1.23727 0.89508 0.90445 0.96665 0.92805 1.89195 1.47831 1.65487 1.27318 0.93533 0.94609 0.88444 0.93583 0.95211 0.95698 0.90042 0.94113 0.92747 0.93011 0.89995 0.90247 0.92561 0.89222 0.90785 0.89617 0.92717 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.31 9.61 -148.98 -1.43 -17.74 16 3 C 0.06 2.53 6.28 71.98 0.45 2.98 16 4 C 0.15 7.92 5.68 86.38 0.49 8.41 16 5 N -0.58 -30.72 2.42 -702.00 -1.70 -32.41 16 6 C -0.26 -14.85 9.49 84.03 0.80 -14.05 16 7 H 0.06 3.13 7.93 -2.91 -0.02 3.11 16 8 C -0.04 -2.27 4.95 84.86 0.42 -1.85 16 9 N -0.91 -54.64 11.30 21.65 0.24 -54.40 16 10 Si 0.96 45.24 29.61 68.60 2.03 47.27 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.16 7.35 5.06 86.38 0.44 7.79 16 15 C 0.06 2.75 3.51 31.08 0.11 2.85 16 16 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 17 C -0.14 -4.26 6.15 31.52 0.19 -4.06 16 18 C -0.12 -3.12 4.01 -9.00 -0.04 -3.16 16 19 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 20 C -0.11 -2.51 6.19 31.79 0.20 -2.31 16 21 C -0.11 -2.41 6.83 31.63 0.22 -2.19 16 22 C -0.12 -3.40 6.57 31.27 0.21 -3.19 16 23 C 0.05 1.87 4.22 31.66 0.13 2.00 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 O -0.38 -17.01 10.42 -148.98 -1.55 -18.56 16 26 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.02 1.31 7.69 -2.39 -0.02 1.29 16 32 H 0.08 4.69 5.29 -2.39 -0.01 4.68 16 33 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.05 2.45 7.21 -2.39 -0.02 2.43 16 35 H 0.05 2.26 8.08 -2.38 -0.02 2.24 16 36 H 0.08 2.37 7.13 -2.39 -0.02 2.36 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 1.48 7.60 -2.39 -0.02 1.46 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.79 7.92 -2.39 -0.02 1.77 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -66.84 337.62 3.41 -63.42 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.95 Total: 17.17 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.86 Total: -4.75 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.45 Total: -86.81 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.98 Total: -36.30 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.84 3.41 -63.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720873739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.444 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds