Wall clock time and date at job start Mon Mar 30 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 11 11 N 1.30502 * 125.64572 * 304.68888 * 10 9 7 12 12 C 1.34132 * 109.25266 * 179.89502 * 11 10 9 13 13 C 1.34675 * 108.01907 * 0.37037 * 12 11 10 14 14 C 1.50696 * 126.58898 * 179.74119 * 13 12 11 15 15 H 1.09003 * 109.64071 * 155.74695 * 14 13 12 16 16 C 1.53881 * 109.64888 * 276.17192 * 14 13 12 17 17 C 1.54980 * 106.65887 * 167.15097 * 16 14 13 18 18 S 1.83289 * 102.48194 * 317.38825 * 17 16 14 19 19 O 1.42095 * 109.35042 * 269.90177 * 18 17 16 20 20 O 1.42094 * 109.35381 * 136.69753 * 18 17 16 21 21 C 1.54168 * 109.65062 * 35.31821 * 14 13 12 22 22 N 1.35047 * 125.65098 * 125.00098 * 10 9 7 23 23 H 0.96999 * 126.39312 * 359.97438 * 22 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.07998 * 125.99234 * 180.11204 * 12 11 10 28 28 H 1.08992 * 110.02964 * 286.32695 * 16 14 13 29 29 H 1.09000 * 110.02646 * 47.74924 * 16 14 13 30 30 H 1.09002 * 110.75456 * 199.17677 * 17 16 14 31 31 H 1.09005 * 111.06628 * 75.73506 * 17 16 14 32 32 H 1.09002 * 110.31515 * 331.13988 * 21 14 13 33 33 H 1.09002 * 110.31763 * 93.32896 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 3.1841 -3.8308 -0.8694 12 6 3.8577 -4.9474 -0.5558 13 6 3.2952 -5.4775 0.5471 14 6 3.7200 -6.7383 1.2547 15 1 3.4033 -6.6981 2.2969 16 6 3.0818 -7.9579 0.5668 17 6 3.8068 -9.2105 1.1210 18 16 5.5621 -8.6828 1.1253 19 8 6.1576 -9.0180 -0.1206 20 8 6.1750 -9.0955 2.3390 21 6 5.2535 -6.8808 1.1842 22 7 2.2628 -4.6514 0.9012 23 1 1.6658 -4.7676 1.6568 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 4.7007 -5.3529 -1.0956 28 1 2.0195 -8.0078 0.8057 29 1 3.2195 -7.8922 -0.5125 30 1 3.6613 -10.0651 0.4602 31 1 3.4703 -9.4430 2.1314 32 1 5.6371 -6.4014 0.2836 33 1 5.7151 -6.4465 2.0710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260373815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:34 Heat of formation + Delta-G solvation = -27.083255 kcal Electronic energy + Delta-G solvation = -18168.030533 eV Core-core repulsion = 15128.501727 eV Total energy + Delta-G solvation = -3039.528805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69383 -37.34103 -37.02743 -36.24249 -33.70683 -32.02546 -31.15352 -29.59959 -26.82656 -25.11883 -23.21121 -22.33189 -20.55155 -19.68218 -19.07593 -17.64831 -17.08228 -16.78311 -16.16540 -15.88912 -14.82228 -14.61486 -14.30146 -14.13404 -13.78246 -13.65898 -13.05402 -12.67261 -12.47309 -12.45890 -12.31997 -12.27077 -11.94637 -11.76155 -11.41071 -11.04581 -10.70947 -10.67040 -10.55120 -10.09254 -9.52269 -9.34729 -8.90414 -8.46490 -7.70672 -6.45760 -4.16274 -0.25791 2.16488 2.41989 3.27200 3.40497 3.44035 3.46080 3.64037 3.72239 3.73003 4.01536 4.29330 4.37885 4.48496 4.50995 4.55075 4.95443 5.14422 5.19416 5.26282 5.31026 5.37194 5.53081 5.61007 5.89751 5.93875 6.56393 6.80512 7.02375 7.22728 7.77543 8.01501 8.39777 8.72456 8.79092 9.51937 10.93534 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045617 B = 0.003700 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.659716 B = 7566.700937 C = 7803.742103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 1.073 2.927 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.584 4.584 8 H 0.058 0.942 9 C 0.081 3.919 10 C 0.275 3.725 11 N -0.489 5.489 12 C -0.015 4.015 13 C -0.062 4.062 14 C 0.007 3.993 15 H 0.094 0.906 16 C -0.115 4.115 17 C -0.588 4.588 18 S 2.389 3.611 19 O -0.935 6.935 20 O -0.942 6.942 21 C -0.584 4.584 22 N -0.572 5.572 23 H 0.412 0.588 24 H 0.266 0.734 25 H 0.023 0.977 26 H 0.040 0.960 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 -18.072 4.710 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.901 3.099 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.623 4.623 8 H 0.076 0.924 9 C 0.043 3.957 10 C 0.011 3.989 11 N -0.208 5.208 12 C -0.165 4.165 13 C -0.177 4.177 14 C -0.014 4.014 15 H 0.112 0.888 16 C -0.153 4.153 17 C -0.718 4.718 18 S 2.573 3.427 19 O -0.932 6.932 20 O -0.939 6.939 21 C -0.714 4.714 22 N -0.174 5.174 23 H 0.249 0.751 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.178 0.822 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.519 -16.453 3.976 18.139 hybrid contribution -0.933 -1.861 1.117 2.362 sum 5.586 -18.314 5.093 19.813 Atomic orbital electron populations 1.70834 1.06833 1.30366 1.46714 1.25893 0.96416 1.02754 0.93546 0.83469 0.74813 0.74875 0.76746 1.20738 1.21471 1.21143 1.21806 0.94806 0.90106 1.55581 0.92393 1.17981 0.91402 0.88726 0.97636 1.24264 0.97895 0.90607 0.86098 1.70408 1.07202 1.16365 1.26779 1.22084 1.02341 0.95344 0.96689 1.20376 0.97399 0.97449 1.02518 1.19678 0.90550 0.91176 1.00026 0.88804 1.22350 1.02249 0.88754 1.01991 1.30617 1.23484 1.06980 1.10703 1.09047 0.78823 0.79596 0.75241 1.93632 1.74239 1.81979 1.43332 1.93611 1.73984 1.80219 1.46072 1.30650 1.03325 1.24306 1.13077 1.43318 1.26937 1.21109 1.26043 0.75096 0.92323 0.95895 0.94215 0.82235 0.88469 0.88677 0.84349 0.84480 0.83557 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 13.65 55.43 0.76 -25.98 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 25.03 29.90 -169.99 -5.08 19.94 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.58 -16.30 9.06 -34.44 -0.31 -16.61 16 8 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 9 C 0.08 1.98 4.91 -29.03 -0.14 1.84 16 10 C 0.28 5.89 7.37 -155.41 -1.15 4.74 16 11 N -0.49 -10.80 11.21 -10.81 -0.12 -10.92 16 12 C -0.01 -0.25 10.89 -17.81 -0.19 -0.45 16 13 C -0.06 -0.88 6.16 -81.60 -0.50 -1.38 16 14 C 0.01 0.06 3.07 -90.70 -0.28 -0.22 16 15 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 16 C -0.11 -0.82 5.77 -25.23 -0.15 -0.97 16 17 C -0.59 -3.24 7.31 38.20 0.28 -2.96 16 18 S 2.39 19.55 6.10 -107.50 -0.66 18.90 16 19 O -0.93 -11.08 18.14 -57.71 -1.05 -12.13 16 20 O -0.94 -10.82 18.14 -57.71 -1.05 -11.87 16 21 C -0.58 -4.72 6.69 37.77 0.25 -4.47 16 22 N -0.57 -9.22 6.15 -6.54 -0.04 -9.26 16 23 H 0.41 5.30 8.96 -40.82 -0.37 4.94 16 24 H 0.27 7.65 7.22 -40.82 -0.29 7.35 16 25 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 26 H 0.04 1.02 8.01 -51.93 -0.42 0.61 16 27 H 0.16 2.23 7.07 -52.49 -0.37 1.86 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.14 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.22 6.22 -51.93 -0.32 0.90 16 33 H 0.14 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -37.52 293.38 -9.03 -46.54 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -3.92 Total: 0.44 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.29 Total: -20.08 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.60 Total: -46.16 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -2.09 Total: -24.00 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Atomic # 16 Polarization: 19.55 SS G_CDS: -0.66 Total: 18.90 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -37.52 -9.03 -46.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds