Wall clock time and date at job start Mon Mar 30 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 11 11 N 1.30502 * 125.64572 * 304.68888 * 10 9 7 12 12 C 1.34132 * 109.25266 * 179.89502 * 11 10 9 13 13 C 1.34675 * 108.01907 * 0.37037 * 12 11 10 14 14 C 1.50696 * 126.58898 * 179.74119 * 13 12 11 15 15 H 1.09003 * 109.64071 * 155.74695 * 14 13 12 16 16 C 1.53881 * 109.64888 * 276.17192 * 14 13 12 17 17 C 1.54980 * 106.65887 * 167.15097 * 16 14 13 18 18 S 1.83289 * 102.48194 * 317.38825 * 17 16 14 19 19 O 1.42095 * 109.35042 * 269.90177 * 18 17 16 20 20 O 1.42094 * 109.35381 * 136.69753 * 18 17 16 21 21 C 1.54168 * 109.65062 * 35.31821 * 14 13 12 22 22 N 1.35047 * 125.65098 * 125.00098 * 10 9 7 23 23 H 0.96999 * 126.39312 * 359.97438 * 22 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.07998 * 125.99234 * 180.11204 * 12 11 10 28 28 H 1.08992 * 110.02964 * 286.32695 * 16 14 13 29 29 H 1.09000 * 110.02646 * 47.74924 * 16 14 13 30 30 H 1.09002 * 110.75456 * 199.17677 * 17 16 14 31 31 H 1.09005 * 111.06628 * 75.73506 * 17 16 14 32 32 H 1.09002 * 110.31515 * 331.13988 * 21 14 13 33 33 H 1.09002 * 110.31763 * 93.32896 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0018 11 7 3.1841 -3.8308 -0.8694 12 6 3.8577 -4.9474 -0.5558 13 6 3.2952 -5.4775 0.5471 14 6 3.7200 -6.7383 1.2547 15 1 3.4033 -6.6981 2.2969 16 6 3.0818 -7.9579 0.5668 17 6 3.8068 -9.2105 1.1210 18 16 5.5621 -8.6828 1.1253 19 8 6.1576 -9.0180 -0.1206 20 8 6.1750 -9.0955 2.3390 21 6 5.2535 -6.8808 1.1842 22 7 2.2628 -4.6514 0.9012 23 1 1.6658 -4.7676 1.6568 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 4.7007 -5.3529 -1.0956 28 1 2.0195 -8.0078 0.8057 29 1 3.2195 -7.8922 -0.5125 30 1 3.6613 -10.0651 0.4602 31 1 3.4703 -9.4430 2.1314 32 1 5.6371 -6.4014 0.2836 33 1 5.7151 -6.4465 2.0710 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260373815.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:34 Heat of formation + Delta-G solvation = -56.307050 kcal Electronic energy + Delta-G solvation = -18169.297771 eV Core-core repulsion = 15128.501727 eV Total energy + Delta-G solvation = -3040.796044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.07614 -38.10922 -37.80403 -37.01457 -35.74427 -33.45289 -32.30490 -30.87477 -28.15682 -26.10308 -25.15060 -23.18868 -21.95922 -20.96261 -19.76683 -19.00942 -18.57794 -17.70063 -17.11874 -16.59896 -16.22535 -15.69083 -15.51977 -15.18346 -14.94113 -14.90185 -14.63015 -14.02087 -13.71224 -13.25904 -13.17653 -13.16577 -13.00889 -12.99850 -12.61870 -12.51575 -12.08396 -11.91630 -11.75550 -11.23815 -11.00159 -10.95773 -10.76392 -10.58607 -9.13504 -8.66275 -6.40021 -0.89563 1.04770 1.53994 1.60880 1.61745 1.81929 2.17608 2.21851 2.57474 2.66646 3.06211 3.13698 3.34818 3.57426 3.72439 3.75370 3.92159 4.04492 4.22729 4.36861 4.47012 4.58946 4.65783 4.83697 4.87091 4.93428 5.06022 5.11494 5.33014 5.84531 5.86854 6.14864 6.43999 6.64161 7.30693 7.35473 8.71529 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045617 B = 0.003700 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.659716 B = 7566.700937 C = 7803.742103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.029 4.029 3 Si 1.116 2.884 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.597 4.597 8 H 0.041 0.959 9 C 0.088 3.912 10 C 0.233 3.767 11 N -0.530 5.530 12 C -0.052 4.052 13 C -0.017 4.017 14 C 0.004 3.996 15 H 0.126 0.874 16 C -0.117 4.117 17 C -0.557 4.557 18 S 2.401 3.599 19 O -0.977 6.977 20 O -0.977 6.977 21 C -0.584 4.584 22 N -0.554 5.554 23 H 0.429 0.571 24 H 0.259 0.741 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.182 0.818 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.166 0.834 32 H 0.142 0.858 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -19.737 6.113 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.227 4.227 3 Si 0.938 3.062 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.636 4.636 8 H 0.059 0.941 9 C 0.050 3.950 10 C -0.031 4.031 11 N -0.249 5.249 12 C -0.200 4.200 13 C -0.134 4.134 14 C -0.017 4.017 15 H 0.144 0.856 16 C -0.156 4.156 17 C -0.690 4.690 18 S 2.589 3.411 19 O -0.975 6.975 20 O -0.974 6.974 21 C -0.714 4.714 22 N -0.158 5.158 23 H 0.269 0.731 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.033 0.967 27 H 0.199 0.801 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.177 0.823 31 H 0.184 0.816 32 H 0.160 0.840 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.737 -18.141 5.397 20.090 hybrid contribution -0.993 -1.481 0.688 1.911 sum 5.744 -19.622 6.084 21.331 Atomic orbital electron populations 1.70935 1.07564 1.30013 1.48480 1.27246 0.96560 1.06177 0.92678 0.82927 0.74137 0.71421 0.77747 1.20343 1.19574 1.20257 1.22070 0.94227 0.92052 1.55202 0.94073 1.17635 0.91696 0.89188 0.96530 1.23407 0.98862 0.92109 0.88756 1.70233 1.07994 1.18726 1.27986 1.22540 1.03748 0.94964 0.98731 1.21081 0.94343 0.97370 1.00556 1.19998 0.91133 0.89149 1.01423 0.85595 1.22377 1.03247 0.88274 1.01733 1.30460 1.18764 1.06753 1.12979 1.08531 0.80039 0.79074 0.73443 1.93578 1.76454 1.82572 1.44847 1.93565 1.76030 1.80718 1.47083 1.30635 1.02785 1.24398 1.13620 1.43156 1.27310 1.19866 1.25474 0.73124 0.93152 0.95493 0.96654 0.80089 0.86637 0.89130 0.82292 0.81584 0.84021 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.65 21.45 0.29 -55.39 16 2 C -0.03 -1.62 5.46 84.65 0.46 -1.16 16 3 Si 1.12 50.49 29.90 68.60 2.05 52.55 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.60 -34.16 9.06 25.60 0.23 -33.93 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.09 4.46 4.91 29.10 0.14 4.60 16 10 C 0.23 10.08 7.37 138.13 1.02 11.10 16 11 N -0.53 -23.72 11.21 -188.13 -2.11 -25.83 16 12 C -0.05 -1.73 10.89 83.52 0.91 -0.82 16 13 C -0.02 -0.44 6.16 40.95 0.25 -0.19 16 14 C 0.00 0.05 3.07 -10.85 -0.03 0.02 16 15 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 16 C -0.12 -1.16 5.77 31.57 0.18 -0.98 16 17 C -0.56 -3.49 7.31 72.66 0.53 -2.96 16 18 S 2.40 33.67 6.10 -56.49 -0.34 33.32 16 19 O -0.98 -22.07 18.14 -127.49 -2.31 -24.39 16 20 O -0.98 -20.56 18.14 -127.49 -2.31 -22.87 16 21 C -0.58 -7.86 6.69 72.38 0.48 -7.38 16 22 N -0.55 -17.00 6.15 -174.61 -1.07 -18.08 16 23 H 0.43 10.03 8.96 -92.71 -0.83 9.20 16 24 H 0.26 15.32 7.22 -92.71 -0.67 14.65 16 25 H 0.03 1.31 8.01 -2.39 -0.02 1.29 16 26 H 0.02 0.84 8.01 -2.38 -0.02 0.82 16 27 H 0.18 4.92 7.07 -2.91 -0.02 4.90 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 30 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.17 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.14 2.12 6.22 -2.39 -0.01 2.11 16 33 H 0.16 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -84.02 293.38 -1.22 -85.24 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.41 Total: 7.15 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.18 Total: -31.70 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -2.89 Total: -99.30 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -4.63 Total: -47.26 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Atomic # 16 Polarization: 33.67 SS G_CDS: -0.34 Total: 33.32 kcal Total: -84.02 -1.22 -85.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260373815.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.938 kcal (2) G-P(sol) polarization free energy of solvation -84.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds