Wall clock time and date at job start Mon Mar 30 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99808 * 2 1 4 4 C 1.53000 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47055 * 64.99858 * 4 3 2 6 6 C 1.36950 * 120.00011 * 262.99657 * 5 4 3 7 7 H 1.07992 * 120.00180 * 355.69136 * 6 5 4 8 8 C 1.38986 * 119.99803 * 175.69179 * 6 5 4 9 9 N 1.31412 * 120.00355 * 90.69911 * 8 6 5 10 10 Si 1.86800 * 120.00048 * 270.69817 * 8 6 5 11 11 H 1.48497 * 109.46998 * 5.01384 * 10 8 6 12 12 H 1.48499 * 109.47303 * 125.01166 * 10 8 6 13 13 H 1.48497 * 109.47001 * 245.01357 * 10 8 6 14 14 C 1.34780 * 119.99920 * 82.99594 * 5 4 3 15 15 O 1.21659 * 120.00305 * 183.08222 * 14 5 4 16 16 C 1.47180 * 119.99882 * 3.08417 * 14 5 4 17 17 C 1.35296 * 123.14734 * 173.85394 * 16 14 5 18 18 S 1.70948 * 108.81721 * 180.26954 * 17 16 14 19 19 C 1.70770 * 91.13542 * 359.97438 * 18 17 16 20 20 C 1.50699 * 124.70757 * 180.02562 * 19 18 17 21 21 N 1.28649 * 110.57608 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.46848 * 299.99826 * 1 2 3 23 23 H 1.08989 * 109.47219 * 60.00216 * 1 2 3 24 24 H 1.09003 * 109.46222 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46929 * 59.99933 * 3 2 1 26 26 H 1.09000 * 109.46898 * 299.99662 * 3 2 1 27 27 H 1.08990 * 109.47362 * 305.00048 * 4 3 2 28 28 H 1.08998 * 109.46798 * 184.99613 * 4 3 2 29 29 H 0.96994 * 120.00171 * 184.92196 * 9 8 6 30 30 H 1.07997 * 125.59582 * 0.24622 * 17 16 14 31 31 H 1.08996 * 109.47212 * 275.00813 * 20 19 18 32 32 H 1.09000 * 109.47523 * 35.00767 * 20 19 18 33 33 H 1.08996 * 109.46768 * 155.01051 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2360 -0.7800 -1.2944 7 1 4.1828 -1.3697 -0.3913 8 6 4.5676 -1.3850 -2.5009 9 7 5.8268 -1.4773 -2.8655 10 14 3.2235 -2.0670 -3.6044 11 1 1.8952 -1.7325 -3.0309 12 1 3.3431 -1.4684 -4.9581 13 1 3.3636 -3.5422 -3.7012 14 6 4.1274 1.3157 -2.3594 15 8 4.4394 0.7916 -3.4120 16 6 3.9146 2.7707 -2.2964 17 6 4.1642 3.6005 -3.3355 18 16 3.7986 5.2020 -2.8623 19 6 3.3334 4.6723 -1.3069 20 6 2.8408 5.5745 -0.2049 21 7 3.4619 3.3962 -1.2066 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8508 0.5687 0.8426 28 1 3.9784 2.1766 0.0901 29 1 6.0541 -1.8343 -3.7382 30 1 4.5342 3.3005 -4.3047 31 1 3.6929 5.9858 0.3362 32 1 2.2567 6.3881 -0.6351 33 1 2.2165 5.0023 0.4813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317083561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:51 Heat of formation + Delta-G solvation = 9.307753 kcal Electronic energy + Delta-G solvation = -19401.401689 eV Core-core repulsion = 16363.450916 eV Total energy + Delta-G solvation = -3037.950773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.69482 -37.69242 -36.86614 -34.03165 -32.73514 -31.66659 -28.92246 -27.71475 -26.14950 -25.39486 -23.45594 -22.09863 -20.19902 -19.08236 -18.17951 -16.43030 -15.81111 -15.60353 -15.09081 -14.68730 -14.58256 -14.39655 -14.08141 -13.60707 -13.18927 -13.08919 -12.51480 -12.32870 -12.05893 -11.93817 -11.87144 -11.37126 -11.26732 -11.10309 -10.89869 -10.53671 -10.40803 -9.90758 -9.19401 -8.97746 -8.94399 -8.74069 -8.23231 -8.10614 -7.52175 -6.86042 -3.23843 1.15922 1.84178 2.29757 2.87736 3.35233 3.61561 3.69618 4.20148 4.44850 4.51037 4.58137 4.95790 5.07370 5.29901 5.49951 5.57814 5.63860 5.71465 5.85596 5.94731 5.97450 6.03254 6.10354 6.17378 6.27814 6.49222 6.57652 6.92943 7.31065 7.80698 7.96747 8.14050 8.69083 9.24824 9.50919 10.05805 10.40388 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.008703 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.718701 B = 3216.691187 C = 4175.318576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.372 6.372 3 C 0.065 3.935 4 C 0.103 3.897 5 N -0.358 5.358 6 C -0.442 4.442 7 H 0.109 0.891 8 C 0.222 3.778 9 N -0.687 5.687 10 Si 0.830 3.170 11 H -0.263 1.263 12 H -0.274 1.274 13 H -0.292 1.292 14 C 0.408 3.592 15 O -0.594 6.594 16 C 0.064 3.936 17 C -0.279 4.279 18 S 0.127 5.873 19 C 0.014 3.986 20 C -0.071 4.071 21 N -0.450 5.450 22 H 0.030 0.970 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.282 0.718 30 H 0.174 0.826 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 11.582 5.231 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.290 6.290 3 C -0.012 4.012 4 C -0.022 4.022 5 N -0.069 5.069 6 C -0.560 4.560 7 H 0.127 0.873 8 C -0.014 4.014 9 N -0.307 5.307 10 Si 0.650 3.350 11 H -0.187 1.187 12 H -0.199 1.199 13 H -0.220 1.220 14 C 0.204 3.796 15 O -0.486 6.486 16 C -0.067 4.067 17 C -0.420 4.420 18 S 0.380 5.620 19 C -0.265 4.265 20 C -0.132 4.132 21 N -0.168 5.168 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.191 0.809 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.781 11.806 4.779 13.987 hybrid contribution -0.812 -0.978 -0.766 1.484 sum -6.593 10.828 4.013 13.297 Atomic orbital electron populations 1.22620 0.83026 1.01905 0.98779 1.88095 1.17819 1.27995 1.95081 1.22869 0.95072 0.84092 0.99216 1.21990 0.92001 1.00223 0.88003 1.43576 1.49157 1.07060 1.07066 1.18537 1.57951 0.82765 0.96777 0.87339 1.24913 0.93830 0.87969 0.94641 1.70687 1.21834 1.19963 1.18174 0.87686 0.88644 0.76294 0.82332 1.18683 1.19938 1.22010 1.16197 0.94843 0.82798 0.85725 1.90503 1.59661 1.69581 1.28830 1.20896 1.00681 0.97462 0.87652 1.25871 1.15025 0.95028 1.06059 1.82263 1.60992 1.09490 1.09226 1.27092 1.05171 0.94731 0.99553 1.20338 1.01506 0.96747 0.94561 1.67359 1.15754 1.06109 1.27618 0.95098 0.94980 0.90321 0.94055 0.93435 0.91280 0.86808 0.90661 0.80896 0.90143 0.90628 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -7.83 10.51 -35.23 -0.37 -8.20 16 3 C 0.06 1.27 5.58 37.16 0.21 1.47 16 4 C 0.10 2.21 5.35 -4.04 -0.02 2.19 16 5 N -0.36 -9.49 2.59 -116.12 -0.30 -9.80 16 6 C -0.44 -12.51 9.35 -14.99 -0.14 -12.65 16 7 H 0.11 3.04 7.99 -52.49 -0.42 2.62 16 8 C 0.22 6.34 3.00 -17.45 -0.05 6.29 16 9 N -0.69 -19.54 13.52 55.50 0.75 -18.79 16 10 Si 0.83 22.05 28.29 -169.99 -4.81 17.24 16 11 H -0.26 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -7.61 7.11 56.52 0.40 -7.21 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 C 0.41 11.22 7.51 -12.63 -0.09 11.12 16 15 O -0.59 -18.18 12.73 5.23 0.07 -18.12 16 16 C 0.06 1.47 6.30 -84.53 -0.53 0.94 16 17 C -0.28 -5.66 10.62 29.68 0.32 -5.35 16 18 S 0.13 1.88 22.92 -107.50 -2.46 -0.58 16 19 C 0.01 0.21 7.34 -13.61 -0.10 0.11 16 20 C -0.07 -0.73 10.46 36.01 0.38 -0.35 16 21 N -0.45 -8.63 5.35 -8.51 -0.05 -8.68 16 22 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.00 6.99 -51.93 -0.36 0.63 16 27 H 0.07 1.43 7.94 -51.93 -0.41 1.02 16 28 H 0.11 2.32 5.30 -51.93 -0.28 2.04 16 29 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.17 3.59 8.04 -52.49 -0.42 3.17 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -33.84 295.30 -5.64 -39.47 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.99 Total: -2.44 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 1.07 Total: 5.44 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.40 Total: -37.26 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.30 Total: -26.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.81 Total: 17.24 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.46 Total: -0.58 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.84 -5.64 -39.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317083561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.780 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds