Wall clock time and date at job start Mon Mar 30 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42908 * 113.99808 * 2 1 4 4 C 1.53000 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47055 * 64.99858 * 4 3 2 6 6 C 1.36950 * 120.00011 * 262.99657 * 5 4 3 7 7 H 1.07992 * 120.00180 * 355.69136 * 6 5 4 8 8 C 1.38986 * 119.99803 * 175.69179 * 6 5 4 9 9 N 1.31412 * 120.00355 * 90.69911 * 8 6 5 10 10 Si 1.86800 * 120.00048 * 270.69817 * 8 6 5 11 11 H 1.48497 * 109.46998 * 5.01384 * 10 8 6 12 12 H 1.48499 * 109.47303 * 125.01166 * 10 8 6 13 13 H 1.48497 * 109.47001 * 245.01357 * 10 8 6 14 14 C 1.34780 * 119.99920 * 82.99594 * 5 4 3 15 15 O 1.21659 * 120.00305 * 183.08222 * 14 5 4 16 16 C 1.47180 * 119.99882 * 3.08417 * 14 5 4 17 17 C 1.35296 * 123.14734 * 173.85394 * 16 14 5 18 18 S 1.70948 * 108.81721 * 180.26954 * 17 16 14 19 19 C 1.70770 * 91.13542 * 359.97438 * 18 17 16 20 20 C 1.50699 * 124.70757 * 180.02562 * 19 18 17 21 21 N 1.28649 * 110.57608 * 0.02562 * 19 18 17 22 22 H 1.08999 * 109.46848 * 299.99826 * 1 2 3 23 23 H 1.08989 * 109.47219 * 60.00216 * 1 2 3 24 24 H 1.09003 * 109.46222 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46929 * 59.99933 * 3 2 1 26 26 H 1.09000 * 109.46898 * 299.99662 * 3 2 1 27 27 H 1.08990 * 109.47362 * 305.00048 * 4 3 2 28 28 H 1.08998 * 109.46798 * 184.99613 * 4 3 2 29 29 H 0.96994 * 120.00171 * 184.92196 * 9 8 6 30 30 H 1.07997 * 125.59582 * 0.24622 * 17 16 14 31 31 H 1.08996 * 109.47212 * 275.00813 * 20 19 18 32 32 H 1.09000 * 109.47523 * 35.00767 * 20 19 18 33 33 H 1.08996 * 109.46768 * 155.01051 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2360 -0.7800 -1.2944 7 1 4.1828 -1.3697 -0.3913 8 6 4.5676 -1.3850 -2.5009 9 7 5.8268 -1.4773 -2.8655 10 14 3.2235 -2.0670 -3.6044 11 1 1.8952 -1.7325 -3.0309 12 1 3.3431 -1.4684 -4.9581 13 1 3.3636 -3.5422 -3.7012 14 6 4.1274 1.3157 -2.3594 15 8 4.4394 0.7916 -3.4120 16 6 3.9146 2.7707 -2.2964 17 6 4.1642 3.6005 -3.3355 18 16 3.7986 5.2020 -2.8623 19 6 3.3334 4.6723 -1.3069 20 6 2.8408 5.5745 -0.2049 21 7 3.4619 3.3962 -1.2066 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8508 0.5687 0.8426 28 1 3.9784 2.1766 0.0901 29 1 6.0541 -1.8343 -3.7382 30 1 4.5342 3.3005 -4.3047 31 1 3.6929 5.9858 0.3362 32 1 2.2567 6.3881 -0.6351 33 1 2.2165 5.0023 0.4813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317083561.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:50 Heat of formation + Delta-G solvation = -15.225938 kcal Electronic energy + Delta-G solvation = -19402.465549 eV Core-core repulsion = 16363.450916 eV Total energy + Delta-G solvation = -3039.014633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.34257 -39.37502 -38.51481 -36.00089 -34.75030 -32.95790 -30.59833 -29.03993 -27.84270 -26.93452 -25.17338 -23.68086 -21.75993 -20.80790 -19.85202 -18.23531 -17.39718 -17.14501 -16.90024 -16.46335 -16.09052 -15.97895 -15.51029 -15.46648 -14.82689 -14.38659 -14.21501 -14.10775 -13.61164 -13.26655 -13.06463 -12.90478 -12.86704 -12.84340 -12.57554 -12.53157 -12.14606 -11.82983 -10.91332 -10.59034 -10.43506 -10.38193 -10.08017 -9.69675 -9.55715 -8.98627 -5.38094 -0.26459 0.50635 0.81447 1.21276 1.27941 1.43948 1.55823 2.12509 2.49810 2.94514 3.06710 3.14474 3.34617 4.10142 4.28450 4.31433 4.42481 4.50567 4.55121 4.59069 4.66623 4.70657 4.79380 4.81742 4.91315 4.96771 5.18035 5.24778 5.37751 5.96024 6.41689 6.62716 6.70822 7.24257 7.52533 7.97925 8.36641 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.008703 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.718701 B = 3216.691187 C = 4175.318576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.076 3.924 4 C 0.101 3.899 5 N -0.370 5.370 6 C -0.499 4.499 7 H 0.096 0.904 8 C 0.214 3.786 9 N -0.711 5.711 10 Si 0.859 3.141 11 H -0.279 1.279 12 H -0.296 1.296 13 H -0.268 1.268 14 C 0.399 3.601 15 O -0.638 6.638 16 C 0.039 3.961 17 C -0.294 4.294 18 S 0.244 5.756 19 C 0.018 3.982 20 C -0.073 4.073 21 N -0.472 5.472 22 H 0.064 0.936 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.287 0.713 30 H 0.161 0.839 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 15.511 6.284 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.001 4.001 4 C -0.023 4.023 5 N -0.081 5.081 6 C -0.616 4.616 7 H 0.114 0.886 8 C -0.020 4.020 9 N -0.332 5.332 10 Si 0.681 3.319 11 H -0.204 1.204 12 H -0.223 1.223 13 H -0.193 1.193 14 C 0.194 3.806 15 O -0.532 6.532 16 C -0.094 4.094 17 C -0.436 4.436 18 S 0.500 5.500 19 C -0.260 4.260 20 C -0.133 4.133 21 N -0.190 5.190 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.099 0.901 30 H 0.178 0.822 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.162 15.726 5.873 18.251 hybrid contribution -0.435 -1.700 -1.168 2.108 sum -7.598 14.026 4.705 16.631 Atomic orbital electron populations 1.22828 0.80730 1.03051 1.00184 1.88048 1.20505 1.29062 1.95359 1.22741 0.93413 0.83792 1.00143 1.22209 0.93786 1.00286 0.85983 1.43612 1.49602 1.06477 1.08368 1.18330 1.62643 0.84146 0.96459 0.88622 1.25235 0.94183 0.87448 0.95159 1.70717 1.22636 1.21094 1.18765 0.87203 0.87299 0.77290 0.80152 1.20413 1.22284 1.19349 1.17014 0.93334 0.84948 0.85299 1.90439 1.60754 1.71388 1.30591 1.20474 1.03167 0.95737 0.90034 1.26269 1.12921 0.99230 1.05183 1.81888 1.57625 1.03417 1.07042 1.28117 1.02378 0.94163 1.01357 1.20662 1.02888 0.96519 0.93268 1.67283 1.17514 1.07836 1.26396 0.91719 0.95322 0.89510 0.90004 0.95117 0.91581 0.85538 0.90144 0.82177 0.87764 0.87445 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.41 -17.33 10.51 -148.98 -1.57 -18.90 16 3 C 0.08 2.90 5.58 71.98 0.40 3.30 16 4 C 0.10 4.38 5.35 86.38 0.46 4.84 16 5 N -0.37 -20.35 2.59 -639.51 -1.66 -22.00 16 6 C -0.50 -29.82 9.35 84.07 0.79 -29.04 16 7 H 0.10 5.74 7.99 -2.91 -0.02 5.72 16 8 C 0.21 12.83 3.00 84.93 0.25 13.08 16 9 N -0.71 -42.39 13.52 21.67 0.29 -42.10 16 10 Si 0.86 47.16 28.29 68.60 1.94 49.10 16 11 H -0.28 -15.84 7.11 99.48 0.71 -15.14 16 12 H -0.30 -17.11 7.11 99.48 0.71 -16.41 16 13 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.40 22.61 7.51 86.59 0.65 23.27 16 15 O -0.64 -40.73 12.73 -4.22 -0.05 -40.78 16 16 C 0.04 1.74 6.30 40.55 0.26 2.00 16 17 C -0.29 -11.50 10.62 67.14 0.71 -10.78 16 18 S 0.24 6.10 22.92 -56.49 -1.29 4.81 16 19 C 0.02 0.48 7.34 88.57 0.65 1.13 16 20 C -0.07 -1.04 10.46 71.24 0.74 -0.30 16 21 N -0.47 -16.97 5.35 -180.85 -0.97 -17.94 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.03 1.26 6.99 -2.39 -0.02 1.25 16 27 H 0.07 2.82 7.94 -2.39 -0.02 2.80 16 28 H 0.13 5.06 5.30 -2.39 -0.01 5.05 16 29 H 0.29 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.16 6.62 8.04 -2.91 -0.02 6.60 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.37 295.30 3.98 -75.39 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.12 Total: 2.79 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.17 Total: 9.63 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.33 Total: -82.04 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.62 Total: -59.68 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.94 Total: 49.10 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.29 Total: 4.81 kcal Total: -79.37 3.98 -75.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317083561.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.161 kcal (2) G-P(sol) polarization free energy of solvation -79.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds