Wall clock time and date at job start Mon Mar 30 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38348 * 119.86864 * 269.72429 * 3 2 1 5 5 C 1.37983 * 120.12922 * 179.76185 * 4 3 2 6 6 C 1.39448 * 119.86738 * 0.51668 * 5 4 3 7 7 C 1.48230 * 120.12907 * 179.72389 * 6 5 4 8 8 C 1.41247 * 119.83270 * 359.73880 * 7 6 5 9 9 C 1.36043 * 119.67765 * 179.78515 * 8 7 6 10 10 C 1.40944 * 119.36680 * 0.49042 * 9 8 7 11 11 O 1.21972 * 120.16664 * 179.71625 * 10 9 8 12 12 N 1.34783 * 119.66395 * 359.73865 * 10 9 8 13 13 C 1.36501 * 119.85322 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99884 * 0.02562 * 13 12 10 15 15 C 1.39347 * 120.00304 * 180.02562 * 13 12 10 16 16 N 1.31059 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00217 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47023 * 90.00017 * 17 15 13 19 19 H 1.48500 * 109.47317 * 210.00343 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00087 * 17 15 13 21 21 N 1.31656 * 119.82754 * 180.02562 * 7 6 5 22 22 C 1.39449 * 119.73931 * 359.73926 * 6 5 4 23 23 C 1.37991 * 119.86602 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08000 * 119.93434 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.07108 * 180.27572 * 5 4 3 31 31 H 1.07998 * 120.16115 * 0.02562 * 8 7 6 32 32 H 1.07999 * 120.31503 * 180.21262 * 9 8 7 33 33 H 0.96996 * 119.99686 * 179.97438 * 16 15 13 34 34 H 1.07997 * 120.06532 * 180.02562 * 22 6 5 35 35 H 1.07994 * 119.93295 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2674 2.0685 -1.1997 5 6 2.7227 3.3711 -1.2060 6 6 2.9561 4.0310 0.0001 7 6 3.4511 5.4282 0.0001 8 6 3.6913 6.0886 -1.2252 9 6 4.1414 7.3724 -1.2216 10 6 4.3711 8.0208 0.0086 11 8 4.7795 9.1699 0.0289 12 7 4.1376 7.3644 1.1624 13 6 4.3592 7.9885 2.3560 14 1 4.7205 9.0061 2.3744 15 6 4.1194 7.3127 3.5508 16 7 3.6815 6.0776 3.5285 17 14 4.4234 8.1665 5.1842 18 1 3.1847 8.8617 5.6174 19 1 4.8087 7.1593 6.2051 20 1 5.5185 9.1574 5.0286 21 7 3.6699 6.0454 1.1422 22 6 2.7224 3.3712 1.2061 23 6 2.2624 2.0702 1.1998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0902 1.5550 -2.1331 30 1 2.9017 3.8773 -2.1431 31 1 3.5148 5.5781 -2.1604 32 1 4.3252 7.8883 -2.1524 33 1 3.5149 5.6071 4.3602 34 1 2.9010 3.8774 2.1433 35 1 2.0814 1.5580 2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005397759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:47 Heat of formation + Delta-G solvation = 50.666456 kcal Electronic energy + Delta-G solvation = -19669.618565 eV Core-core repulsion = 16633.850384 eV Total energy + Delta-G solvation = -3035.768182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.71024 -38.80196 -35.88961 -34.71117 -33.58900 -31.82165 -30.68657 -30.14193 -28.49026 -26.09740 -24.14464 -23.18512 -21.97046 -21.50018 -20.21487 -18.63005 -16.98549 -16.03652 -15.46181 -15.34306 -14.88148 -14.67953 -14.44714 -14.18415 -13.68767 -13.40357 -13.17532 -12.84564 -12.61593 -12.21272 -11.97051 -11.87896 -11.63011 -11.53733 -11.19392 -11.07429 -11.01018 -10.66878 -10.59371 -10.42804 -10.17988 -9.50707 -8.90618 -8.47154 -8.32175 -8.30556 -7.34706 -6.85863 -4.40721 1.47098 1.82080 1.90287 2.93338 2.94237 3.00883 3.12637 3.55576 3.99474 4.20851 4.48155 4.94291 5.02849 5.14440 5.25861 5.35387 5.40829 5.48154 5.63820 5.67327 5.81008 5.86161 5.91529 5.99837 6.18775 6.21584 6.24962 6.43984 6.56584 6.79853 6.81603 6.98902 7.02886 7.10512 7.28334 7.35055 7.52115 7.63462 8.03948 8.48009 9.22927 9.56480 9.96779 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005629 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.884508 B = 4973.091416 C = 6298.204626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.102 4.102 4 C -0.121 4.121 5 C -0.119 4.119 6 C 0.007 3.993 7 C 0.010 3.990 8 C -0.116 4.116 9 C -0.237 4.237 10 C 0.419 3.581 11 O -0.603 6.603 12 N -0.183 5.183 13 C -0.247 4.247 14 H 0.138 0.862 15 C 0.032 3.968 16 N -0.735 5.735 17 Si 0.944 3.056 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.258 1.258 21 N -0.172 5.172 22 C -0.092 4.092 23 C -0.121 4.121 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.281 0.719 34 H 0.148 0.852 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -11.452 -2.201 12.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.139 4.139 5 C -0.138 4.138 6 C 0.005 3.995 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.266 4.266 10 C 0.227 3.773 11 O -0.492 6.492 12 N 0.018 4.982 13 C -0.386 4.386 14 H 0.155 0.845 15 C -0.188 4.188 16 N -0.363 5.363 17 Si 0.766 3.234 18 H -0.191 1.191 19 H -0.197 1.197 20 H -0.182 1.182 21 N -0.005 5.005 22 C -0.111 4.111 23 C -0.139 4.139 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.399 -11.156 -1.266 12.059 hybrid contribution 0.147 0.432 -0.318 0.556 sum -4.252 -10.724 -1.584 11.644 Atomic orbital electron populations 1.21751 0.95188 1.01106 1.02286 1.20473 0.95834 0.93232 1.02216 1.19809 1.01063 0.95984 0.93405 1.20733 1.01465 0.94708 0.97038 1.21103 1.00781 0.94666 0.97286 1.18204 0.97675 0.90396 0.93230 1.20310 1.08461 0.95072 0.90438 1.21347 1.00488 0.95051 0.97418 1.21692 1.10990 0.96354 0.97582 1.17480 0.86610 0.88340 0.84891 1.90743 1.53710 1.17926 1.86808 1.46119 1.37117 1.07308 1.07623 1.20738 1.37584 0.99611 0.80695 0.84474 1.25913 0.96003 0.95767 1.01071 1.70136 1.27918 1.08816 1.29401 0.85635 0.79942 0.79344 0.78454 1.19093 1.19659 1.18174 1.76859 1.12188 0.91015 1.20399 1.21609 0.96461 0.93790 0.99272 1.20932 1.00863 0.95091 0.96998 0.92542 0.92907 0.92654 0.91468 0.91562 0.86716 0.86128 0.86572 0.85159 0.90788 0.83425 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.89 37.16 0.37 -1.06 16 2 C -0.08 -0.86 6.06 -27.88 -0.17 -1.03 16 3 C -0.10 -1.42 5.14 -104.54 -0.54 -1.96 16 4 C -0.12 -1.71 9.68 -39.63 -0.38 -2.10 16 5 C -0.12 -1.93 9.43 -39.22 -0.37 -2.30 16 6 C 0.01 0.14 5.88 -104.89 -0.62 -0.48 16 7 C 0.01 0.23 6.84 -82.69 -0.57 -0.34 16 8 C -0.12 -2.45 9.42 -39.23 -0.37 -2.82 16 9 C -0.24 -5.50 10.00 -39.35 -0.39 -5.89 16 10 C 0.42 11.46 7.45 -15.23 -0.11 11.34 16 11 O -0.60 -17.88 16.67 4.94 0.08 -17.80 16 12 N -0.18 -5.01 3.62 -13.75 -0.05 -5.06 16 13 C -0.25 -6.53 9.64 -15.06 -0.15 -6.68 16 14 H 0.14 3.61 7.14 -52.48 -0.37 3.24 16 15 C 0.03 0.75 5.49 -17.47 -0.10 0.65 16 16 N -0.73 -17.65 11.13 55.51 0.62 -17.03 16 17 Si 0.94 17.80 29.55 -169.99 -5.02 12.78 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 N -0.17 -4.42 7.92 33.47 0.27 -4.15 16 22 C -0.09 -1.74 9.58 -39.22 -0.38 -2.12 16 23 C -0.12 -1.89 9.68 -39.63 -0.38 -2.27 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 29 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.73 6.19 -52.49 -0.33 1.41 16 31 H 0.12 1.97 6.22 -52.49 -0.33 1.65 16 32 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.28 6.04 8.30 -40.82 -0.34 5.70 16 34 H 0.15 3.08 7.39 -52.49 -0.39 2.69 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -29.93 304.40 -7.60 -37.53 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.92 Total: 6.18 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -4.15 Total: -17.03 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.83 Total: -26.25 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.08 Total: -17.80 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.02 Total: 12.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.93 -7.60 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005397759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.198 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds