Wall clock time and date at job start Mon Mar 30 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38348 * 119.86864 * 269.72429 * 3 2 1 5 5 C 1.37983 * 120.12922 * 179.76185 * 4 3 2 6 6 C 1.39448 * 119.86738 * 0.51668 * 5 4 3 7 7 C 1.48230 * 120.12907 * 179.72389 * 6 5 4 8 8 C 1.41247 * 119.83270 * 359.73880 * 7 6 5 9 9 C 1.36043 * 119.67765 * 179.78515 * 8 7 6 10 10 C 1.40944 * 119.36680 * 0.49042 * 9 8 7 11 11 O 1.21972 * 120.16664 * 179.71625 * 10 9 8 12 12 N 1.34783 * 119.66395 * 359.73865 * 10 9 8 13 13 C 1.36501 * 119.85322 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99884 * 0.02562 * 13 12 10 15 15 C 1.39347 * 120.00304 * 180.02562 * 13 12 10 16 16 N 1.31059 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00217 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47023 * 90.00017 * 17 15 13 19 19 H 1.48500 * 109.47317 * 210.00343 * 17 15 13 20 20 H 1.48504 * 109.47278 * 330.00087 * 17 15 13 21 21 N 1.31656 * 119.82754 * 180.02562 * 7 6 5 22 22 C 1.39449 * 119.73931 * 359.73926 * 6 5 4 23 23 C 1.37991 * 119.86602 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 29 29 H 1.08000 * 119.93434 * 0.02562 * 4 3 2 30 30 H 1.08000 * 120.07108 * 180.27572 * 5 4 3 31 31 H 1.07998 * 120.16115 * 0.02562 * 8 7 6 32 32 H 1.07999 * 120.31503 * 180.21262 * 9 8 7 33 33 H 0.96996 * 119.99686 * 179.97438 * 16 15 13 34 34 H 1.07997 * 120.06532 * 180.02562 * 22 6 5 35 35 H 1.07994 * 119.93295 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2674 2.0685 -1.1997 5 6 2.7227 3.3711 -1.2060 6 6 2.9561 4.0310 0.0001 7 6 3.4511 5.4282 0.0001 8 6 3.6913 6.0886 -1.2252 9 6 4.1414 7.3724 -1.2216 10 6 4.3711 8.0208 0.0086 11 8 4.7795 9.1699 0.0289 12 7 4.1376 7.3644 1.1624 13 6 4.3592 7.9885 2.3560 14 1 4.7205 9.0061 2.3744 15 6 4.1194 7.3127 3.5508 16 7 3.6815 6.0776 3.5285 17 14 4.4234 8.1665 5.1842 18 1 3.1847 8.8617 5.6174 19 1 4.8087 7.1593 6.2051 20 1 5.5185 9.1574 5.0286 21 7 3.6699 6.0454 1.1422 22 6 2.7224 3.3712 1.2061 23 6 2.2624 2.0702 1.1998 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.0902 1.5550 -2.1331 30 1 2.9017 3.8773 -2.1431 31 1 3.5148 5.5781 -2.1604 32 1 4.3252 7.8883 -2.1524 33 1 3.5149 5.6071 4.3602 34 1 2.9010 3.8774 2.1433 35 1 2.0814 1.5580 2.1331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005397759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:46 Heat of formation + Delta-G solvation = 33.709966 kcal Electronic energy + Delta-G solvation = -19670.353854 eV Core-core repulsion = 16633.850384 eV Total energy + Delta-G solvation = -3036.503470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56038 -40.15764 -37.75009 -36.44392 -34.86424 -33.58127 -32.18694 -31.61337 -29.93185 -27.83898 -25.64448 -24.69086 -23.32348 -23.03449 -21.51876 -20.43876 -18.73564 -17.67765 -17.18321 -17.00994 -16.43215 -16.25678 -15.93384 -15.68603 -14.98289 -14.49399 -14.43467 -14.16358 -14.06844 -13.71731 -13.64830 -13.46738 -13.20836 -13.05561 -12.79057 -12.48645 -12.14952 -12.06028 -11.83748 -11.69854 -11.58460 -11.38339 -10.69434 -10.24580 -9.93062 -9.73300 -9.04188 -8.62435 -6.36538 -0.10938 0.16666 0.63433 1.32837 1.33891 1.48429 1.51668 1.86165 2.27229 2.51045 2.96186 3.29454 3.55433 3.87912 3.99569 4.02114 4.20397 4.29900 4.44680 4.47548 4.61034 4.68791 4.79047 4.81780 4.97264 5.05778 5.16820 5.17659 5.22570 5.30347 5.38912 5.44864 5.48965 5.59986 5.76330 5.82303 5.90414 6.18848 6.21825 6.61443 7.30629 7.63810 8.24073 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005629 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.884508 B = 4973.091416 C = 6298.204626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.107 4.107 6 C -0.036 4.036 7 C 0.026 3.974 8 C -0.107 4.107 9 C -0.225 4.225 10 C 0.377 3.623 11 O -0.654 6.654 12 N -0.203 5.203 13 C -0.311 4.311 14 H 0.118 0.882 15 C 0.003 3.997 16 N -0.764 5.764 17 Si 1.015 2.985 18 H -0.259 1.259 19 H -0.254 1.254 20 H -0.262 1.262 21 N -0.199 5.199 22 C -0.109 4.109 23 C -0.127 4.127 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.290 0.710 34 H 0.116 0.884 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -15.309 -3.946 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.084 4.084 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.038 4.038 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.254 4.254 10 C 0.186 3.814 11 O -0.548 6.548 12 N 0.000 5.000 13 C -0.447 4.447 14 H 0.136 0.864 15 C -0.213 4.213 16 N -0.392 5.392 17 Si 0.833 3.167 18 H -0.183 1.183 19 H -0.178 1.178 20 H -0.186 1.186 21 N -0.027 5.027 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.175 0.825 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.744 -15.035 -2.958 16.364 hybrid contribution 0.406 1.205 -0.040 1.273 sum -5.338 -13.830 -2.999 15.124 Atomic orbital electron populations 1.21743 0.94306 1.02397 1.01806 1.20583 0.96407 0.90876 1.03860 1.20302 0.98080 0.97455 0.92605 1.21198 0.99765 0.93838 0.98708 1.21382 0.99203 0.95416 0.96596 1.18293 1.01261 0.89174 0.95089 1.21243 1.04962 0.96445 0.90518 1.21818 0.98432 0.94082 0.98940 1.22045 1.09259 0.97168 0.96971 1.18176 0.88273 0.88620 0.86336 1.90670 1.56886 1.19731 1.87492 1.46203 1.38171 1.07827 1.07848 1.20774 1.42068 0.99923 0.81940 0.86424 1.26804 0.94658 0.96288 1.03536 1.70183 1.28523 1.09776 1.30723 0.84648 0.79731 0.78381 0.73922 1.18342 1.17773 1.18635 1.76864 1.12625 0.90706 1.22487 1.21503 0.97872 0.95330 0.98142 1.21121 1.00565 0.93856 0.98911 0.93612 0.90842 0.92605 0.90559 0.89347 0.82722 0.83694 0.81164 0.82457 0.89934 0.86551 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.08 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.08 -1.97 5.14 -19.81 -0.10 -2.07 16 4 C -0.12 -2.68 9.68 22.24 0.22 -2.47 16 5 C -0.11 -3.00 9.43 22.50 0.21 -2.79 16 6 C -0.04 -1.35 5.88 -20.04 -0.12 -1.47 16 7 C 0.03 1.17 6.84 42.57 0.29 1.46 16 8 C -0.11 -4.27 9.42 22.50 0.21 -4.06 16 9 C -0.23 -10.44 10.00 22.42 0.22 -10.21 16 10 C 0.38 21.77 7.45 84.90 0.63 22.40 16 11 O -0.65 -41.62 16.67 -5.23 -0.09 -41.71 16 12 N -0.20 -11.85 3.62 -315.50 -1.14 -12.99 16 13 C -0.31 -17.89 9.64 84.23 0.81 -17.08 16 14 H 0.12 6.92 7.14 -2.91 -0.02 6.90 16 15 C 0.00 0.17 5.49 85.08 0.47 0.63 16 16 N -0.76 -38.76 11.13 21.72 0.24 -38.52 16 17 Si 1.02 38.32 29.55 68.60 2.03 40.35 16 18 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 N -0.20 -10.66 7.92 -48.03 -0.38 -11.04 16 22 C -0.11 -4.10 9.58 22.50 0.22 -3.88 16 23 C -0.13 -3.68 9.68 22.24 0.22 -3.46 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 28 H 0.09 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.15 3.31 6.19 -2.91 -0.02 3.29 16 31 H 0.17 4.92 6.22 -2.91 -0.02 4.90 16 32 H 0.16 6.29 8.06 -2.91 -0.02 6.26 16 33 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 34 H 0.12 5.09 7.39 -2.91 -0.02 5.07 16 35 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -72.42 304.40 5.94 -66.49 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.11 Total: 23.00 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.17 Total: -25.58 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -1.28 Total: -62.54 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.09 Total: -41.71 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -72.42 5.94 -66.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005397759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.196 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds