Wall clock time and date at job start Mon Mar 30 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47037 * 2 1 4 4 C 1.37973 * 119.99832 * 180.02562 * 3 2 1 5 5 N 1.30742 * 125.57662 * 359.97286 * 4 3 2 6 6 N 1.26260 * 117.54054 * 180.02562 * 5 4 3 7 7 C 1.30709 * 116.34875 * 0.02562 * 6 5 4 8 8 C 1.46877 * 126.10646 * 180.02562 * 7 6 5 9 9 O 1.21676 * 119.99522 * 172.69549 * 8 7 6 10 10 N 1.34774 * 120.00395 * 352.69179 * 8 7 6 11 11 C 1.46497 * 119.99896 * 3.57018 * 10 8 7 12 12 C 1.46503 * 120.00179 * 183.56471 * 10 8 7 13 13 C 1.50696 * 109.47105 * 90.00124 * 12 10 8 14 14 H 1.07999 * 119.99879 * 0.02562 * 13 12 10 15 15 C 1.37875 * 120.00188 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99697 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00159 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47280 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47275 * 120.00481 * 17 15 13 20 20 H 1.48501 * 109.47134 * 240.00091 * 17 15 13 21 21 S 1.71265 * 125.57691 * 180.02562 * 4 3 2 22 22 H 1.09000 * 109.46995 * 299.99857 * 1 2 3 23 23 H 1.08994 * 109.47191 * 59.99634 * 1 2 3 24 24 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46995 * 240.00143 * 2 1 3 26 26 H 1.08998 * 109.47610 * 120.00619 * 2 1 3 27 27 H 0.96998 * 119.99933 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47482 * 83.95650 * 11 10 8 29 29 H 1.09001 * 109.47424 * 203.96085 * 11 10 8 30 30 H 1.09004 * 109.46960 * 323.95446 * 11 10 8 31 31 H 1.08997 * 109.46881 * 210.00516 * 12 10 8 32 32 H 1.08996 * 109.46798 * 330.00043 * 12 10 8 33 33 H 0.96994 * 120.00115 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3748 1.6334 -0.0005 5 7 4.3169 0.7269 -0.0006 6 7 5.5139 1.1288 -0.0006 7 6 5.6909 2.4239 -0.0001 8 6 6.9839 3.1207 -0.0005 9 8 7.0234 4.3295 -0.1339 10 7 8.1264 2.4213 0.1469 11 6 8.0848 0.9592 0.2291 12 6 9.4101 3.1231 0.2249 13 6 9.7189 3.4469 1.6638 14 1 9.0284 3.1584 2.4425 15 6 10.8836 4.1106 1.9865 16 7 11.7247 4.4614 1.0383 17 14 11.2668 4.5113 3.7702 18 1 10.1688 4.0123 4.6366 19 1 12.5415 3.8578 4.1616 20 1 11.3950 5.9821 3.9306 21 16 4.0999 3.1849 0.0000 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.3880 2.1185 0.0004 28 1 8.0613 0.5392 -0.7764 29 1 8.9706 0.5993 0.7525 30 1 7.1915 0.6511 0.7725 31 1 10.1968 2.4876 -0.1816 32 1 9.3548 4.0465 -0.3516 33 1 12.5439 4.9286 1.2652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087696805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:55 Heat of formation + Delta-G solvation = 19.971738 kcal Electronic energy + Delta-G solvation = -17965.158339 eV Core-core repulsion = 14959.962743 eV Total energy + Delta-G solvation = -3005.195597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.22089 -40.47888 -37.93658 -36.72756 -34.77644 -32.86354 -31.13629 -29.46711 -27.85429 -26.92295 -25.25304 -24.27884 -22.40574 -20.85448 -19.99550 -18.74771 -18.63968 -17.44597 -17.26550 -16.91265 -16.32284 -16.18365 -15.93857 -15.43872 -14.90183 -14.43399 -14.28570 -13.80103 -13.52833 -13.25907 -13.10245 -13.01820 -12.84870 -12.73716 -12.54870 -12.24865 -11.88773 -11.77267 -11.65679 -11.27091 -10.93877 -10.78732 -10.64299 -9.56839 -9.23057 -8.22866 -6.37926 -0.80847 -0.52384 0.16056 1.19852 1.38840 1.40526 1.53132 1.86240 2.06888 2.29044 2.42886 3.06636 3.17253 3.59023 3.95960 4.05819 4.21911 4.49844 4.53176 4.73031 4.90504 4.95013 5.04783 5.09889 5.19196 5.24340 5.49831 5.51951 5.76592 6.02272 6.14423 6.49917 6.69134 7.06074 7.32987 7.46914 8.84985 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.037762 B = 0.003996 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.311234 B = 7005.593106 C = 7039.872053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.653 5.653 4 C 0.267 3.733 5 N -0.368 5.368 6 N -0.169 5.169 7 C -0.110 4.110 8 C 0.585 3.415 9 O -0.578 6.578 10 N -0.580 5.580 11 C 0.081 3.919 12 C 0.258 3.742 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.011 3.989 16 N -0.926 5.926 17 Si 0.971 3.029 18 H -0.269 1.269 19 H -0.268 1.268 20 H -0.278 1.278 21 S 0.216 5.784 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.433 0.567 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.010 0.990 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.063 -9.173 -1.702 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.007 4.007 3 N -0.293 5.293 4 C -0.104 4.104 5 N -0.222 5.222 6 N -0.015 5.015 7 C -0.392 4.392 8 C 0.369 3.631 9 O -0.458 6.458 10 N -0.310 5.310 11 C -0.062 4.062 12 C 0.137 3.863 13 C -0.585 4.585 14 H 0.071 0.929 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.204 1.204 21 S 0.455 5.545 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.274 0.726 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.878 -8.947 -1.814 25.564 hybrid contribution 0.569 0.569 0.628 1.021 sum -23.309 -8.379 -1.186 24.797 Atomic orbital electron populations 1.21990 0.91255 1.04721 1.03534 1.21694 0.96397 0.79966 1.02629 1.44127 0.98118 1.11129 1.75927 1.26309 0.93626 0.94264 0.96226 1.71662 0.93454 1.28723 1.28333 1.71917 1.11928 1.09877 1.07737 1.28463 0.99052 0.93452 1.18251 1.16795 0.82431 0.85827 0.78048 1.90782 1.87040 1.14539 1.53486 1.47984 1.06543 1.08865 1.67642 1.22172 1.04016 0.77393 1.02571 1.18992 0.78817 0.91896 0.96560 1.21684 1.05527 1.38276 0.93060 0.92880 1.25846 0.95603 0.94875 1.02540 1.70050 1.11711 1.40319 1.34430 0.85321 0.78373 0.78017 0.78812 1.19303 1.19338 1.20377 1.84581 0.96464 1.03359 1.70080 0.90993 0.90906 0.89059 0.91395 0.91507 0.72642 0.91548 0.90864 0.88823 0.94894 0.97175 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 10.03 71.98 0.72 0.07 16 2 C 0.12 1.28 6.69 86.38 0.58 1.86 16 3 N -0.65 -8.95 5.69 -350.55 -1.99 -10.95 16 4 C 0.27 6.22 8.20 179.23 1.47 7.69 16 5 N -0.37 -10.99 11.22 -59.39 -0.67 -11.65 16 6 N -0.17 -5.92 8.17 -50.06 -0.41 -6.32 16 7 C -0.11 -4.14 7.26 87.12 0.63 -3.51 16 8 C 0.58 27.65 7.65 86.50 0.66 28.32 16 9 O -0.58 -31.29 16.53 -4.27 -0.07 -31.36 16 10 N -0.58 -27.80 2.86 -855.68 -2.44 -30.24 16 11 C 0.08 3.10 9.59 127.77 1.23 4.32 16 12 C 0.26 14.53 5.16 85.63 0.44 14.97 16 13 C -0.55 -32.44 9.39 25.60 0.24 -32.20 16 14 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 15 C 0.01 0.62 5.46 84.65 0.46 1.09 16 16 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 17 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 S 0.22 5.86 23.15 -56.49 -1.31 4.55 16 22 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 23 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.43 3.23 8.59 -92.71 -0.80 2.44 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 30 H 0.09 3.43 5.38 -2.38 -0.01 3.42 16 31 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 32 H 0.01 0.64 7.37 -2.39 -0.02 0.62 16 33 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -75.77 303.60 2.20 -73.57 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 0.35 Total: -1.63 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.43 Total: 22.60 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -5.23 Total: -115.22 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.07 Total: -31.36 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 5.86 SS G_CDS: -1.31 Total: 4.55 kcal Total: -75.77 2.20 -73.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087696805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.539 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds