Wall clock time and date at job start Mon Mar 30 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65599 * 119.99651 * 2 1 4 4 O 1.42096 * 106.40481 * 174.99644 * 3 2 1 5 5 O 1.42104 * 106.40204 * 42.07771 * 3 2 1 6 6 N 1.65599 * 107.21895 * 288.53874 * 3 2 1 7 7 C 1.46501 * 119.99994 * 276.46207 * 6 3 2 8 8 C 1.50701 * 109.46920 * 264.99844 * 7 6 3 9 9 H 1.07998 * 120.00285 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99686 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99868 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47126 * 119.99478 * 12 10 8 15 15 H 1.48499 * 109.46975 * 239.99698 * 12 10 8 16 16 C 1.39678 * 120.00307 * 96.45933 * 6 3 2 17 17 C 1.38915 * 120.06984 * 335.00538 * 16 6 3 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.09006 * 109.47084 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47711 * 299.99546 * 1 2 3 24 24 H 1.09000 * 109.47604 * 60.00098 * 1 2 3 25 25 H 0.96996 * 119.99984 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47023 * 24.99457 * 7 6 3 27 27 H 1.08997 * 109.47258 * 144.99944 * 7 6 3 28 28 H 0.96999 * 119.99519 * 180.02562 * 11 10 8 29 29 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 30 30 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 33 33 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6696 1.1028 0.1189 5 8 1.6172 2.2876 0.9135 6 7 2.1024 2.1102 -1.4997 7 6 2.9735 1.7002 -2.6040 8 6 4.1303 2.6598 -2.7141 9 1 4.2085 3.4921 -2.0303 10 6 5.0882 2.4758 -3.6887 11 7 4.9926 1.4627 -4.5216 12 14 6.5224 3.6649 -3.8248 13 1 6.3996 4.7106 -2.7774 14 1 7.7972 2.9260 -3.6400 15 1 6.5102 4.3037 -5.1653 16 6 1.1112 3.0712 -1.7119 17 6 -0.0135 3.1026 -0.8972 18 6 -0.9915 4.0544 -1.1094 19 6 -0.8516 4.9758 -2.1311 20 6 0.2669 4.9473 -2.9439 21 6 1.2485 3.9982 -2.7372 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.9500 -0.8400 0.0004 26 1 3.3516 0.6955 -2.4147 27 1 2.4069 1.7058 -3.5351 28 1 5.6667 1.3331 -5.2070 29 1 -0.1253 2.3807 -0.1018 30 1 -1.8664 4.0792 -0.4767 31 1 -1.6177 5.7194 -2.2946 32 1 0.3731 5.6686 -3.7406 33 1 2.1216 3.9762 -3.3727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126897855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:59 Heat of formation + Delta-G solvation = -42.061021 kcal Electronic energy + Delta-G solvation = -19397.889423 eV Core-core repulsion = 16357.711133 eV Total energy + Delta-G solvation = -3040.178290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.04429 -36.82282 -35.45707 -35.34337 -34.79251 -32.64476 -30.46213 -29.20100 -26.82148 -25.87414 -23.10074 -22.29099 -21.18910 -19.10136 -18.07393 -17.10183 -16.74194 -16.03511 -15.98370 -15.21149 -14.45616 -14.32203 -13.91111 -13.77589 -13.41861 -13.05728 -12.95250 -12.55210 -12.25923 -12.11766 -11.66757 -11.48400 -11.40130 -11.28125 -11.08124 -10.90034 -10.76083 -10.40597 -10.33105 -9.93679 -9.48573 -9.17794 -8.55271 -8.42631 -7.42750 -6.16663 -4.21407 1.00611 1.87350 1.94494 3.26486 3.32329 3.34688 3.41425 3.93279 4.34897 4.38315 4.79432 5.08253 5.18446 5.25074 5.39003 5.44731 5.51986 5.73323 5.78125 5.88701 5.91793 6.11720 6.35608 6.55576 6.83859 6.95543 6.99880 7.07590 7.14206 7.29058 7.34093 7.72934 7.81526 8.03301 8.81633 9.44243 10.91603 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.008958 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.741488 B = 3124.969159 C = 4208.802486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.134 6.134 3 S 2.779 3.221 4 O -0.954 6.954 5 O -0.982 6.982 6 N -0.934 5.934 7 C 0.249 3.751 8 C -0.531 4.531 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.898 3.102 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.189 3.811 17 C -0.178 4.178 18 C -0.097 4.097 19 C -0.160 4.160 20 C -0.101 4.101 21 C -0.133 4.133 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.415 0.585 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 -0.676 4.756 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.893 5.893 3 S 2.787 3.213 4 O -0.938 6.938 5 O -0.965 6.965 6 N -0.761 5.761 7 C 0.128 3.872 8 C -0.570 4.570 9 H 0.083 0.917 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.726 3.274 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.091 3.909 17 C -0.199 4.199 18 C -0.115 4.115 19 C -0.180 4.180 20 C -0.120 4.120 21 C -0.155 4.155 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.248 0.752 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.240 -0.342 5.353 12.455 hybrid contribution 0.902 -0.013 -0.533 1.048 sum -10.338 -0.355 4.821 11.412 Atomic orbital electron populations 1.21525 0.79288 1.03655 1.01809 1.55921 1.15881 1.25553 1.91969 1.02231 0.73150 0.72930 0.72997 1.93667 1.30919 1.83625 1.85540 1.93579 1.75831 1.65561 1.61538 1.56027 1.41395 1.48085 1.30599 1.19309 0.88076 0.96073 0.83747 1.21435 1.07519 1.12019 1.16010 0.91734 1.24921 0.97946 0.95667 0.95280 1.69920 1.35501 1.29072 1.18596 0.86427 0.82119 0.80969 0.77924 1.19489 1.20727 1.20841 1.17618 0.87228 0.89895 0.96154 1.21319 0.93811 1.03226 1.01567 1.20739 0.98160 0.95081 0.97559 1.20957 0.98873 1.00529 0.97612 1.21003 0.93804 0.98120 0.99040 1.21407 1.00663 0.94000 0.99477 0.90351 0.91725 0.91948 0.75212 0.93933 0.93767 0.92554 0.85153 0.86436 0.86859 0.86330 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.72 59.85 0.58 1.54 16 2 N -1.13 -16.38 6.25 -16.63 -0.10 -16.49 16 3 S 2.78 54.79 5.77 -107.50 -0.62 54.17 16 4 O -0.95 -22.38 17.35 -57.17 -0.99 -23.37 16 5 O -0.98 -20.10 14.31 -57.17 -0.82 -20.92 16 6 N -0.93 -19.76 3.04 -59.81 -0.18 -19.94 16 7 C 0.25 6.06 4.46 -5.19 -0.02 6.03 16 8 C -0.53 -14.40 7.90 -34.44 -0.27 -14.67 16 9 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 12 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.19 3.75 6.14 -83.78 -0.51 3.23 16 17 C -0.18 -3.08 7.65 -39.38 -0.30 -3.38 16 18 C -0.10 -1.45 10.04 -39.61 -0.40 -1.84 16 19 C -0.16 -2.32 10.04 -39.54 -0.40 -2.72 16 20 C -0.10 -1.62 10.04 -39.61 -0.40 -2.02 16 21 C -0.13 -2.59 9.04 -39.38 -0.36 -2.95 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 24 H 0.06 0.73 6.95 -51.93 -0.36 0.37 16 25 H 0.42 5.17 8.96 -34.47 -0.31 4.86 16 26 H 0.04 1.08 7.79 -51.93 -0.40 0.67 16 27 H 0.04 1.10 7.74 -51.93 -0.40 0.69 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.13 2.12 3.50 -52.49 -0.18 1.94 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.15 3.18 6.17 -52.48 -0.32 2.85 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -32.28 288.55 -8.44 -40.73 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.62 Total: 4.58 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.17 Total: -15.09 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.45 Total: -60.83 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.81 Total: -44.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -0.62 Total: 54.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.28 -8.44 -40.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126897855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.334 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds