Wall clock time and date at job start Mon Mar 30 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65599 * 119.99651 * 2 1 4 4 O 1.42096 * 106.40481 * 174.99644 * 3 2 1 5 5 O 1.42104 * 106.40204 * 42.07771 * 3 2 1 6 6 N 1.65599 * 107.21895 * 288.53874 * 3 2 1 7 7 C 1.46501 * 119.99994 * 276.46207 * 6 3 2 8 8 C 1.50701 * 109.46920 * 264.99844 * 7 6 3 9 9 H 1.07998 * 120.00285 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99686 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99868 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47062 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47126 * 119.99478 * 12 10 8 15 15 H 1.48499 * 109.46975 * 239.99698 * 12 10 8 16 16 C 1.39678 * 120.00307 * 96.45933 * 6 3 2 17 17 C 1.38915 * 120.06984 * 335.00538 * 16 6 3 18 18 C 1.38104 * 119.92359 * 179.97438 * 17 16 6 19 19 C 1.38288 * 120.07208 * 359.97438 * 18 17 16 20 20 C 1.38290 * 120.15288 * 0.02562 * 19 18 17 21 21 C 1.38100 * 120.07105 * 359.97438 * 20 19 18 22 22 H 1.09006 * 109.47084 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47711 * 299.99546 * 1 2 3 24 24 H 1.09000 * 109.47604 * 60.00098 * 1 2 3 25 25 H 0.96996 * 119.99984 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47023 * 24.99457 * 7 6 3 27 27 H 1.08997 * 109.47258 * 144.99944 * 7 6 3 28 28 H 0.96999 * 119.99519 * 180.02562 * 11 10 8 29 29 H 1.07998 * 120.03739 * 359.69591 * 17 16 6 30 30 H 1.08001 * 119.96576 * 179.97438 * 18 17 16 31 31 H 1.08007 * 119.92458 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.96313 * 180.02562 * 20 19 18 33 33 H 1.08007 * 120.03349 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6696 1.1028 0.1189 5 8 1.6172 2.2876 0.9135 6 7 2.1024 2.1102 -1.4997 7 6 2.9735 1.7002 -2.6040 8 6 4.1303 2.6598 -2.7141 9 1 4.2085 3.4921 -2.0303 10 6 5.0882 2.4758 -3.6887 11 7 4.9926 1.4627 -4.5216 12 14 6.5224 3.6649 -3.8248 13 1 6.3996 4.7106 -2.7774 14 1 7.7972 2.9260 -3.6400 15 1 6.5102 4.3037 -5.1653 16 6 1.1112 3.0712 -1.7119 17 6 -0.0135 3.1026 -0.8972 18 6 -0.9915 4.0544 -1.1094 19 6 -0.8516 4.9758 -2.1311 20 6 0.2669 4.9473 -2.9439 21 6 1.2485 3.9982 -2.7372 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.9500 -0.8400 0.0004 26 1 3.3516 0.6955 -2.4147 27 1 2.4069 1.7058 -3.5351 28 1 5.6667 1.3331 -5.2070 29 1 -0.1253 2.3807 -0.1018 30 1 -1.8664 4.0792 -0.4767 31 1 -1.6177 5.7194 -2.2946 32 1 0.3731 5.6686 -3.7406 33 1 2.1216 3.9762 -3.3727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126897855.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:59 Heat of formation + Delta-G solvation = -65.884501 kcal Electronic energy + Delta-G solvation = -19398.922486 eV Core-core repulsion = 16357.711133 eV Total energy + Delta-G solvation = -3041.211354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41994 -38.46805 -37.04279 -36.98657 -35.97108 -34.64900 -31.79616 -30.72299 -28.64149 -26.91899 -24.98294 -23.63485 -22.62731 -20.54390 -19.50817 -18.87832 -18.42295 -17.74755 -17.26196 -16.74110 -16.17469 -15.77083 -15.30481 -14.99326 -14.90500 -14.55918 -14.33400 -13.92737 -13.87061 -13.72898 -13.34777 -13.23521 -13.05134 -12.86530 -12.70218 -12.52366 -12.31717 -12.13627 -11.99659 -11.54565 -10.97704 -10.66461 -10.62751 -9.73162 -8.89820 -8.25272 -6.37435 -0.52201 0.57508 0.63251 1.35786 1.38372 1.50106 1.84578 2.36187 2.47984 3.03493 3.04818 3.28571 3.78407 4.13052 4.21198 4.31044 4.49324 4.58609 4.63794 4.71080 4.84645 4.90075 4.93621 5.06941 5.15676 5.31069 5.56973 5.62305 5.75401 5.81413 5.86311 5.98859 6.07117 6.33154 6.68574 7.30652 8.81656 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.008958 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.741488 B = 3124.969159 C = 4208.802486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.119 6.119 3 S 2.791 3.209 4 O -1.001 7.001 5 O -0.990 6.990 6 N -0.941 5.941 7 C 0.267 3.733 8 C -0.542 4.542 9 H 0.049 0.951 10 C 0.018 3.982 11 N -0.919 5.919 12 Si 0.955 3.045 13 H -0.273 1.273 14 H -0.277 1.277 15 H -0.268 1.268 16 C 0.155 3.845 17 C -0.185 4.185 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.101 4.101 21 C -0.163 4.163 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.426 0.574 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.269 0.731 29 H 0.139 0.861 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.141 0.859 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.996 0.147 5.254 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.883 5.883 3 S 2.799 3.201 4 O -0.984 6.984 5 O -0.974 6.974 6 N -0.768 5.768 7 C 0.144 3.856 8 C -0.581 4.581 9 H 0.067 0.933 10 C -0.182 4.182 11 N -0.559 5.559 12 Si 0.780 3.220 13 H -0.198 1.198 14 H -0.203 1.203 15 H -0.193 1.193 16 C 0.059 3.941 17 C -0.207 4.207 18 C -0.110 4.110 19 C -0.166 4.166 20 C -0.120 4.120 21 C -0.186 4.186 22 H 0.135 0.865 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.261 0.739 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.156 0.844 30 H 0.175 0.825 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.455 0.493 5.852 14.681 hybrid contribution 1.412 -0.255 -0.657 1.579 sum -12.042 0.238 5.195 13.117 Atomic orbital electron populations 1.21875 0.76873 1.06398 1.02173 1.55496 1.17340 1.24136 1.91351 1.01647 0.72354 0.73582 0.72552 1.93596 1.34228 1.84478 1.86140 1.93551 1.75670 1.66548 1.61618 1.55854 1.41755 1.49393 1.29756 1.18817 0.87686 0.94644 0.84418 1.21629 1.08698 1.12066 1.15745 0.93270 1.25667 1.00281 0.97236 0.95039 1.69994 1.36450 1.30300 1.19117 0.85554 0.79131 0.79022 0.78325 1.19751 1.20306 1.19316 1.17930 0.88104 0.90373 0.97709 1.21540 0.93492 1.04309 1.01335 1.21256 0.98404 0.93640 0.97661 1.21425 0.98599 1.00538 0.96051 1.21298 0.93462 0.97353 0.99872 1.21330 1.01148 0.96048 1.00033 0.86465 0.90831 0.92151 0.73885 0.95504 0.95007 0.92178 0.84364 0.82504 0.82727 0.84114 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 9.72 127.77 1.24 2.73 16 2 N -1.12 -31.49 6.25 -206.53 -1.29 -32.78 16 3 S 2.79 111.87 5.77 -56.49 -0.33 111.54 16 4 O -1.00 -48.69 17.35 -128.00 -2.22 -50.91 16 5 O -0.99 -40.33 14.31 -128.00 -1.83 -42.16 16 6 N -0.94 -41.16 3.04 -343.12 -1.04 -42.21 16 7 C 0.27 13.66 4.46 85.63 0.38 14.04 16 8 C -0.54 -30.72 7.90 25.60 0.20 -30.52 16 9 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 10 C 0.02 1.01 5.46 84.66 0.46 1.47 16 11 N -0.92 -53.09 13.29 21.45 0.28 -52.80 16 12 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 C 0.16 6.23 6.14 38.21 0.23 6.47 16 17 C -0.19 -6.13 7.65 22.40 0.17 -5.96 16 18 C -0.09 -2.39 10.04 22.25 0.22 -2.17 16 19 C -0.15 -3.70 10.04 22.29 0.22 -3.47 16 20 C -0.10 -3.09 10.04 22.25 0.22 -2.87 16 21 C -0.16 -6.48 9.04 22.40 0.20 -6.28 16 22 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.07 1.41 7.66 -2.39 -0.02 1.40 16 24 H 0.06 1.30 6.95 -2.39 -0.02 1.28 16 25 H 0.43 10.28 8.96 -96.75 -0.87 9.42 16 26 H 0.03 1.44 7.79 -2.39 -0.02 1.42 16 27 H 0.03 1.68 7.74 -2.39 -0.02 1.66 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.14 4.25 3.50 -2.91 -0.01 4.24 16 30 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 31 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.12 5.30 6.17 -2.91 -0.02 5.29 16 Total: -1.00 -71.94 288.55 -0.56 -72.51 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.27 Total: 16.63 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 3.57 Total: -26.56 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -2.05 Total: -127.79 kcal Atomic # 8 Polarization: -89.02 SS G_CDS: -4.05 Total: -93.07 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 111.87 SS G_CDS: -0.33 Total: 111.54 kcal Total: -71.94 -0.56 -72.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126897855.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.621 kcal (2) G-P(sol) polarization free energy of solvation -71.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds