Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47319 * 323.69666 * 3 2 1 5 5 C 1.36757 * 120.00390 * 273.32041 * 4 3 2 6 6 H 1.08001 * 120.00079 * 147.28581 * 5 4 3 7 7 C 1.39083 * 119.99365 * 327.28163 * 5 4 3 8 8 N 1.31350 * 119.99525 * 153.09998 * 7 5 4 9 9 Si 1.86801 * 120.00375 * 333.09095 * 7 5 4 10 10 H 1.48499 * 109.46971 * 95.07534 * 9 7 5 11 11 H 1.48499 * 109.47239 * 215.07570 * 9 7 5 12 12 H 1.48498 * 109.47072 * 335.07796 * 9 7 5 13 13 C 1.34777 * 119.99536 * 93.31283 * 4 3 2 14 14 O 1.21790 * 119.99724 * 180.02562 * 13 4 3 15 15 C 1.41740 * 120.00525 * 0.02562 * 13 4 3 16 16 C 1.35197 * 120.00454 * 179.97438 * 15 13 4 17 17 C 1.46872 * 120.00069 * 179.72612 * 16 15 13 18 18 C 1.40066 * 120.09596 * 359.72776 * 17 16 15 19 19 C 1.37085 * 119.89648 * 179.71698 * 18 17 16 20 20 C 1.39251 * 120.10011 * 0.57657 * 19 18 17 21 21 N 1.39124 * 119.90513 * 179.69254 * 20 19 18 22 22 C 1.39250 * 120.19479 * 359.68064 * 20 19 18 23 23 C 1.37092 * 120.09817 * 0.03564 * 22 20 19 24 24 H 4.40646 * 5.51403 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47075 * 203.70086 * 3 2 1 26 26 H 1.09004 * 109.47392 * 83.70246 * 3 2 1 27 27 H 0.96998 * 119.99546 * 179.97438 * 8 7 5 28 28 H 1.08009 * 119.99577 * 359.72606 * 15 13 4 29 29 H 1.08002 * 119.99525 * 359.72976 * 16 15 13 30 30 H 1.07997 * 120.04820 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.94939 * 180.27446 * 19 18 17 32 32 H 0.96992 * 120.00338 * 179.97438 * 21 20 19 33 33 H 0.97010 * 119.99630 * 359.97438 * 21 20 19 34 34 H 1.07998 * 119.94855 * 180.02562 * 22 20 19 35 35 H 1.07992 * 120.05048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1122 0.8178 5 6 3.2981 -0.9502 2.1658 6 1 3.1358 -1.7835 2.8335 7 6 3.6731 0.2878 2.6769 8 7 3.3365 0.6217 3.9019 9 14 4.6556 1.4753 1.6215 10 1 3.7308 2.4284 0.9570 11 1 5.6090 2.2260 2.4775 12 1 5.4079 0.7157 0.5910 13 6 3.4236 -2.2958 0.2414 14 8 3.8295 -3.2212 0.9213 15 6 3.2548 -2.4638 -1.1558 16 6 3.5449 -3.6509 -1.7340 17 6 3.3643 -3.8267 -3.1809 18 6 2.8861 -2.7676 -3.9629 19 6 2.7246 -2.9343 -5.3139 20 6 3.0236 -4.1581 -5.9072 21 7 2.8521 -4.3248 -7.2777 22 6 3.4942 -5.2154 -5.1329 23 6 3.6642 -5.0558 -3.7819 24 1 -1.0499 -0.0004 0.0000 25 1 3.0089 0.9419 0.4131 26 1 3.0094 -0.1119 -1.0215 27 1 3.5984 1.4850 4.2585 28 1 2.8905 -1.6445 -1.7581 29 1 3.9095 -4.4700 -1.1318 30 1 2.6491 -1.8197 -3.5027 31 1 2.3602 -2.1168 -5.9183 32 1 3.0603 -5.1764 -7.6925 33 1 2.5242 -3.5891 -7.8185 34 1 3.7253 -6.1627 -5.5972 35 1 4.0296 -5.8762 -3.1822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310576054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = 88.268976 kcal Electronic energy + Delta-G solvation = -19191.704041 eV Core-core repulsion = 16157.566428 eV Total energy + Delta-G solvation = -3034.137614 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52221 -38.86547 -35.61916 -35.05211 -32.77342 -32.13052 -31.59090 -31.00927 -28.19698 -26.74593 -25.30669 -23.15987 -22.58158 -20.55624 -18.59501 -18.11687 -17.49005 -16.95682 -16.68085 -16.44771 -15.65214 -15.01809 -14.51025 -14.15483 -13.78687 -13.60230 -13.39647 -13.28027 -13.15778 -12.79823 -12.52608 -12.24488 -11.81596 -11.30886 -11.16746 -10.93180 -10.80320 -10.71016 -10.23666 -9.72449 -9.51854 -9.17949 -9.05871 -9.02086 -8.50989 -7.92738 -7.22738 -6.49088 -3.90557 0.97129 1.47672 2.43371 2.98532 3.16994 3.23709 3.26887 3.41807 3.67599 3.94514 4.09457 4.37047 4.62736 4.80467 4.86396 4.92966 5.14925 5.20232 5.38757 5.46267 5.52370 5.68405 5.79595 5.94716 6.06743 6.09048 6.20812 6.40516 6.44863 6.49115 6.80343 6.86296 7.06185 7.32584 7.50261 7.51577 8.16391 8.26371 8.47862 8.94614 9.27336 9.78066 10.62647 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.004355 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.948239 B = 6427.771497 C = 6709.600995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.190 3.810 4 N -0.450 5.450 5 C -0.313 4.313 6 H 0.111 0.889 7 C 0.061 3.939 8 N -0.846 5.846 9 Si 0.863 3.137 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.258 1.258 13 C 0.489 3.511 14 O -0.572 6.572 15 C -0.196 4.196 16 C -0.048 4.048 17 C -0.114 4.114 18 C -0.058 4.058 19 C -0.199 4.199 20 C 0.214 3.786 21 N -0.878 5.878 22 C -0.201 4.201 23 C -0.053 4.053 24 H 0.213 0.787 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.276 0.724 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.119 0.881 32 H 0.396 0.604 33 H 0.397 0.603 34 H 0.119 0.881 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -4.243 -21.070 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C 0.067 3.933 4 N -0.169 5.169 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.146 4.146 8 N -0.481 5.481 9 Si 0.690 3.310 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.182 1.182 13 C 0.282 3.718 14 O -0.457 6.457 15 C -0.217 4.217 16 C -0.069 4.069 17 C -0.116 4.116 18 C -0.077 4.077 19 C -0.222 4.222 20 C 0.109 3.891 21 N -0.416 5.416 22 C -0.224 4.224 23 C -0.072 4.072 24 H 0.230 0.770 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.224 0.776 33 H 0.225 0.775 34 H 0.137 0.863 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.810 -4.543 -20.464 21.040 hybrid contribution 0.133 0.919 -0.782 1.214 sum -1.677 -3.624 -21.246 21.618 Atomic orbital electron populations 1.24694 0.95640 1.01144 1.01810 1.23630 0.94784 0.99835 0.99323 1.18960 0.84333 0.93397 0.96582 1.43668 1.55472 1.09763 1.07980 1.19093 1.45856 0.98963 0.80058 0.87183 1.25339 0.96350 0.97043 0.95874 1.69799 1.39755 1.21855 1.16686 0.87185 0.81358 0.81092 0.81413 1.19867 1.20819 1.18153 1.16902 0.82940 0.84340 0.87574 1.90682 1.49865 1.39921 1.65259 1.22257 1.04839 0.98551 0.96080 1.22149 0.95614 0.97464 0.91683 1.18921 1.05052 0.94320 0.93343 1.21083 0.95351 0.98378 0.92855 1.20367 1.09871 0.96445 0.95476 1.17905 0.93261 0.93765 0.84178 1.42372 1.76234 1.17548 1.05431 1.20358 1.09381 0.98351 0.94275 1.20991 0.95938 0.96359 0.93913 0.76996 0.89216 0.88996 0.91368 0.86675 0.85164 0.85633 0.86289 0.77572 0.77537 0.86322 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.83 19.25 29.55 0.57 -3.26 16 2 C -0.17 -3.57 13.66 -37.12 -0.51 -4.08 16 3 C 0.19 4.04 4.63 -6.83 -0.03 4.01 16 4 N -0.45 -11.41 2.21 -121.15 -0.27 -11.68 16 5 C -0.31 -9.08 9.39 -15.04 -0.14 -9.22 16 6 H 0.11 3.58 7.80 -52.49 -0.41 3.17 16 7 C 0.06 1.71 5.27 -17.44 -0.09 1.62 16 8 N -0.85 -24.44 13.95 55.50 0.77 -23.67 16 9 Si 0.86 20.12 25.17 -169.99 -4.28 15.85 16 10 H -0.27 -5.86 6.60 56.52 0.37 -5.49 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.49 12.09 7.40 -14.92 -0.11 11.97 16 14 O -0.57 -16.16 15.91 5.11 0.08 -16.08 16 15 C -0.20 -3.80 8.46 -39.33 -0.33 -4.14 16 16 C -0.05 -0.83 9.41 -37.17 -0.35 -1.18 16 17 C -0.11 -1.65 5.87 -105.03 -0.62 -2.27 16 18 C -0.06 -0.76 9.38 -39.31 -0.37 -1.13 16 19 C -0.20 -2.22 9.85 -39.62 -0.39 -2.61 16 20 C 0.21 2.20 6.76 -83.80 -0.57 1.64 16 21 N -0.88 -5.98 9.06 32.44 0.29 -5.69 16 22 C -0.20 -2.16 9.85 -39.62 -0.39 -2.55 16 23 C -0.05 -0.66 9.76 -39.31 -0.38 -1.04 16 24 H 0.21 2.83 7.80 -54.10 -0.42 2.41 16 25 H 0.09 1.97 2.85 -51.93 -0.15 1.83 16 26 H 0.09 1.60 5.90 -51.93 -0.31 1.29 16 27 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.12 1.92 4.03 -52.48 -0.21 1.71 16 29 H 0.13 2.35 7.45 -52.49 -0.39 1.96 16 30 H 0.13 1.55 6.16 -52.49 -0.32 1.23 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.40 1.97 8.83 -40.82 -0.36 1.61 16 33 H 0.40 2.03 8.83 -40.82 -0.36 1.67 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -34.15 308.18 -5.83 -39.98 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -3.36 Total: 8.88 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.71 Total: -12.23 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.80 Total: -41.03 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.08 Total: -16.08 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.28 Total: 15.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.15 -5.83 -39.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310576054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.247 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds