Wall clock time and date at job start Mon Mar 30 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47319 * 323.69666 * 3 2 1 5 5 C 1.36757 * 120.00390 * 273.32041 * 4 3 2 6 6 H 1.08001 * 120.00079 * 147.28581 * 5 4 3 7 7 C 1.39083 * 119.99365 * 327.28163 * 5 4 3 8 8 N 1.31350 * 119.99525 * 153.09998 * 7 5 4 9 9 Si 1.86801 * 120.00375 * 333.09095 * 7 5 4 10 10 H 1.48499 * 109.46971 * 95.07534 * 9 7 5 11 11 H 1.48499 * 109.47239 * 215.07570 * 9 7 5 12 12 H 1.48498 * 109.47072 * 335.07796 * 9 7 5 13 13 C 1.34777 * 119.99536 * 93.31283 * 4 3 2 14 14 O 1.21790 * 119.99724 * 180.02562 * 13 4 3 15 15 C 1.41740 * 120.00525 * 0.02562 * 13 4 3 16 16 C 1.35197 * 120.00454 * 179.97438 * 15 13 4 17 17 C 1.46872 * 120.00069 * 179.72612 * 16 15 13 18 18 C 1.40066 * 120.09596 * 359.72776 * 17 16 15 19 19 C 1.37085 * 119.89648 * 179.71698 * 18 17 16 20 20 C 1.39251 * 120.10011 * 0.57657 * 19 18 17 21 21 N 1.39124 * 119.90513 * 179.69254 * 20 19 18 22 22 C 1.39250 * 120.19479 * 359.68064 * 20 19 18 23 23 C 1.37092 * 120.09817 * 0.03564 * 22 20 19 24 24 H 4.40646 * 5.51403 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.47075 * 203.70086 * 3 2 1 26 26 H 1.09004 * 109.47392 * 83.70246 * 3 2 1 27 27 H 0.96998 * 119.99546 * 179.97438 * 8 7 5 28 28 H 1.08009 * 119.99577 * 359.72606 * 15 13 4 29 29 H 1.08002 * 119.99525 * 359.72976 * 16 15 13 30 30 H 1.07997 * 120.04820 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.94939 * 180.27446 * 19 18 17 32 32 H 0.96992 * 120.00338 * 179.97438 * 21 20 19 33 33 H 0.97010 * 119.99630 * 359.97438 * 21 20 19 34 34 H 1.07998 * 119.94855 * 180.02562 * 22 20 19 35 35 H 1.07992 * 120.05048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1122 0.8178 5 6 3.2981 -0.9502 2.1658 6 1 3.1358 -1.7835 2.8335 7 6 3.6731 0.2878 2.6769 8 7 3.3365 0.6217 3.9019 9 14 4.6556 1.4753 1.6215 10 1 3.7308 2.4284 0.9570 11 1 5.6090 2.2260 2.4775 12 1 5.4079 0.7157 0.5910 13 6 3.4236 -2.2958 0.2414 14 8 3.8295 -3.2212 0.9213 15 6 3.2548 -2.4638 -1.1558 16 6 3.5449 -3.6509 -1.7340 17 6 3.3643 -3.8267 -3.1809 18 6 2.8861 -2.7676 -3.9629 19 6 2.7246 -2.9343 -5.3139 20 6 3.0236 -4.1581 -5.9072 21 7 2.8521 -4.3248 -7.2777 22 6 3.4942 -5.2154 -5.1329 23 6 3.6642 -5.0558 -3.7819 24 1 -1.0499 -0.0004 0.0000 25 1 3.0089 0.9419 0.4131 26 1 3.0094 -0.1119 -1.0215 27 1 3.5984 1.4850 4.2585 28 1 2.8905 -1.6445 -1.7581 29 1 3.9095 -4.4700 -1.1318 30 1 2.6491 -1.8197 -3.5027 31 1 2.3602 -2.1168 -5.9183 32 1 3.0603 -5.1764 -7.6925 33 1 2.5242 -3.5891 -7.8185 34 1 3.7253 -6.1627 -5.5972 35 1 4.0296 -5.8762 -3.1822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310576054.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:26 Heat of formation + Delta-G solvation = 64.268587 kcal Electronic energy + Delta-G solvation = -19192.744776 eV Core-core repulsion = 16157.566428 eV Total energy + Delta-G solvation = -3035.178349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95390 -40.18270 -37.31960 -36.20517 -34.60304 -33.41936 -33.32716 -31.90633 -29.43360 -28.40167 -27.03113 -24.36498 -23.63758 -21.86080 -20.24972 -19.71483 -18.77792 -18.37901 -17.87212 -17.74314 -17.25304 -16.15127 -16.09550 -15.76084 -15.06752 -14.92108 -14.78063 -14.45842 -14.44455 -14.19187 -14.17478 -14.01416 -13.04573 -12.87991 -12.60183 -12.51926 -12.12398 -12.02658 -11.72268 -11.36471 -11.22089 -10.99696 -10.43357 -10.31224 -9.95118 -9.91310 -8.59479 -8.17002 -6.09795 -0.23755 0.60246 1.12017 1.20598 1.33860 1.42489 1.72659 1.93153 2.13908 2.44680 2.92202 3.00547 3.04407 3.13322 3.60702 3.84706 3.90863 4.11872 4.14295 4.24010 4.33028 4.49343 4.57348 4.65753 4.89097 5.07988 5.15482 5.22098 5.26518 5.42610 5.48050 5.68106 5.87787 5.94158 6.00257 6.50536 6.59408 6.73018 6.88948 7.00772 7.23219 7.83375 8.58143 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.026764 B = 0.004355 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.948239 B = 6427.771497 C = 6709.600995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.234 4.234 3 C 0.189 3.811 4 N -0.463 5.463 5 C -0.343 4.343 6 H 0.045 0.955 7 C 0.017 3.983 8 N -0.895 5.895 9 Si 0.935 3.065 10 H -0.236 1.236 11 H -0.277 1.277 12 H -0.253 1.253 13 C 0.488 3.512 14 O -0.628 6.628 15 C -0.236 4.236 16 C -0.003 4.003 17 C -0.157 4.157 18 C -0.055 4.055 19 C -0.209 4.209 20 C 0.231 3.769 21 N -0.859 5.859 22 C -0.210 4.210 23 C -0.049 4.049 24 H 0.255 0.745 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.283 0.717 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.145 0.855 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -3.537 -26.293 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.235 4.235 3 C 0.068 3.932 4 N -0.182 5.182 5 C -0.470 4.470 6 H 0.063 0.937 7 C -0.187 4.187 8 N -0.531 5.531 9 Si 0.758 3.242 10 H -0.161 1.161 11 H -0.204 1.204 12 H -0.176 1.176 13 C 0.284 3.716 14 O -0.517 6.517 15 C -0.257 4.257 16 C -0.024 4.024 17 C -0.160 4.160 18 C -0.074 4.074 19 C -0.232 4.232 20 C 0.122 3.878 21 N -0.397 5.397 22 C -0.232 4.232 23 C -0.068 4.068 24 H 0.271 0.729 25 H 0.100 0.900 26 H 0.147 0.853 27 H 0.093 0.907 28 H 0.163 0.837 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.239 0.761 33 H 0.239 0.761 34 H 0.163 0.837 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.438 -3.824 -25.761 26.157 hybrid contribution 0.210 0.388 0.537 0.695 sum -2.228 -3.436 -25.224 25.555 Atomic orbital electron populations 1.25704 0.96566 0.98226 0.99159 1.23795 0.95400 1.02456 1.01830 1.19063 0.85355 0.91237 0.97528 1.43670 1.56468 1.11217 1.06869 1.18630 1.48846 0.97911 0.81648 0.93664 1.26121 0.96287 0.98780 0.97477 1.69891 1.41128 1.23153 1.18976 0.86045 0.79748 0.78870 0.79584 1.16102 1.20363 1.17634 1.17783 0.80980 0.83327 0.89542 1.90627 1.52234 1.41712 1.67099 1.21950 1.09916 1.00801 0.93022 1.22328 0.90739 0.95804 0.93501 1.18804 1.09333 0.96291 0.91530 1.21220 0.94383 0.98037 0.93717 1.20621 1.09989 0.97624 0.94936 1.18093 0.90924 0.93232 0.85514 1.42423 1.74338 1.18725 1.04177 1.20629 1.09263 0.99728 0.93604 1.21185 0.94871 0.95776 0.95001 0.72861 0.90021 0.85264 0.90691 0.83720 0.86866 0.85193 0.83849 0.76100 0.76116 0.83731 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.00 19.25 74.32 1.43 -4.57 16 2 C -0.23 -9.38 13.66 31.12 0.43 -8.95 16 3 C 0.19 8.00 4.63 84.57 0.39 8.39 16 4 N -0.46 -24.58 2.21 -655.39 -1.45 -26.02 16 5 C -0.34 -21.40 9.39 84.13 0.79 -20.62 16 6 H 0.05 3.30 7.80 -2.91 -0.02 3.28 16 7 C 0.02 1.00 5.27 84.97 0.45 1.45 16 8 N -0.90 -54.43 13.95 21.69 0.30 -54.13 16 9 Si 0.94 42.22 25.17 68.60 1.73 43.95 16 10 H -0.24 -9.28 6.60 99.48 0.66 -8.62 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 H -0.25 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.49 25.43 7.40 85.11 0.63 26.06 16 14 O -0.63 -38.28 15.91 -4.64 -0.07 -38.35 16 15 C -0.24 -9.26 8.46 22.43 0.19 -9.07 16 16 C 0.00 -0.09 9.41 23.83 0.22 0.13 16 17 C -0.16 -4.28 5.87 -20.13 -0.12 -4.40 16 18 C -0.05 -1.28 9.38 22.44 0.21 -1.07 16 19 C -0.21 -3.80 9.85 22.24 0.22 -3.59 16 20 C 0.23 3.72 6.76 38.47 0.26 3.97 16 21 N -0.86 -7.31 9.06 -51.29 -0.46 -7.78 16 22 C -0.21 -3.69 9.85 22.24 0.22 -3.47 16 23 C -0.05 -1.11 9.76 22.44 0.22 -0.89 16 24 H 0.26 5.79 7.80 -4.42 -0.03 5.76 16 25 H 0.08 3.51 2.85 -2.38 -0.01 3.50 16 26 H 0.13 4.29 5.90 -2.39 -0.01 4.28 16 27 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.15 4.66 4.03 -2.91 -0.01 4.65 16 29 H 0.11 4.27 7.45 -2.91 -0.02 4.25 16 30 H 0.13 2.85 6.16 -2.91 -0.02 2.83 16 31 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.41 1.95 8.83 -92.71 -0.82 1.13 16 33 H 0.41 2.04 8.83 -92.70 -0.82 1.22 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -82.58 308.18 5.05 -77.53 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.54 Total: 21.43 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 5.54 Total: -16.64 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.61 Total: -87.93 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.07 Total: -38.35 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.73 Total: 43.95 kcal Total: -82.58 5.05 -77.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310576054.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.802 kcal (2) G-P(sol) polarization free energy of solvation -82.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds