Wall clock time and date at job start Mon Mar 30 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29033 * 124.91469 * 2 1 4 4 C 1.31786 * 117.12135 * 179.97438 * 3 2 1 5 5 C 1.33634 * 114.50411 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.03921 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47672 * 89.99904 * 6 5 4 8 8 C 1.46901 * 111.00120 * 66.04374 * 7 6 5 9 9 C 1.46902 * 111.00332 * 190.00440 * 7 6 5 10 10 C 1.52998 * 109.47376 * 75.86896 * 9 7 6 11 11 O 1.42907 * 109.47115 * 64.43799 * 10 9 7 12 12 C 1.42894 * 113.99866 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47190 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99872 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00444 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99857 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47157 * 90.00209 * 17 15 13 19 19 H 1.48500 * 109.47139 * 209.99403 * 17 15 13 20 20 H 1.48497 * 109.47463 * 329.99793 * 17 15 13 21 21 S 1.70980 * 124.91840 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47507 * 269.99785 * 1 2 3 23 23 H 1.08999 * 109.47309 * 30.00208 * 1 2 3 24 24 H 1.08997 * 109.47117 * 149.99841 * 1 2 3 25 25 H 1.07993 * 122.74211 * 180.26772 * 4 3 2 26 26 H 1.08999 * 109.47142 * 210.00187 * 6 5 4 27 27 H 1.09003 * 109.47247 * 329.99364 * 6 5 4 28 28 H 1.08995 * 109.47298 * 54.76228 * 8 7 6 29 29 H 1.09003 * 109.47105 * 174.76504 * 8 7 6 30 30 H 1.08997 * 109.47146 * 294.75996 * 8 7 6 31 31 H 1.09003 * 109.46926 * 195.86986 * 9 7 6 32 32 H 1.09002 * 109.46600 * 315.86647 * 9 7 6 33 33 H 1.08998 * 109.47100 * 184.43849 * 10 9 7 34 34 H 1.09000 * 109.47206 * 304.43832 * 10 9 7 35 35 H 1.09000 * 109.47205 * 299.99852 * 12 11 10 36 36 H 1.08998 * 109.47360 * 60.00097 * 12 11 10 37 37 H 0.96996 * 120.00006 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3574 -0.8993 0.0004 7 7 5.8196 -1.0615 1.3853 8 6 5.0750 -2.1285 2.0673 9 6 7.2656 -1.3162 1.4313 10 6 8.0218 -0.0107 1.1770 11 8 7.7546 0.9090 2.2377 12 6 8.4170 2.1672 2.0966 13 6 8.0653 3.0537 3.2634 14 1 7.4018 2.6925 4.0353 15 6 8.5896 4.3263 3.3451 16 7 9.3971 4.7663 2.4049 17 14 8.1541 5.4248 4.7918 18 1 9.1381 5.2175 5.8846 19 1 8.1849 6.8457 4.3612 20 1 6.7935 5.0847 5.2797 21 16 2.4856 -1.4020 0.0006 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 4.2530 1.7001 0.0048 26 1 5.4057 -1.8593 -0.5135 27 1 5.9949 -0.1797 -0.5135 28 1 5.1452 -3.0485 1.4871 29 1 5.4985 -2.2907 3.0585 30 1 4.0288 -1.8379 2.1624 31 1 7.5347 -1.7067 2.4128 32 1 7.5307 -2.0449 0.6653 33 1 9.0919 -0.2134 1.1329 34 1 7.6944 0.4205 0.2310 35 1 9.4953 2.0094 2.0718 36 1 8.0982 2.6439 1.1696 37 1 9.7663 5.6614 2.4625 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338911853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:44 Heat of formation + Delta-G solvation = 0.747659 kcal Electronic energy + Delta-G solvation = -18242.490439 eV Core-core repulsion = 15340.001567 eV Total energy + Delta-G solvation = -2902.488872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.70106 -37.89994 -36.06870 -32.77492 -32.44780 -30.06584 -29.15253 -26.90254 -25.98421 -24.14823 -23.09326 -22.22480 -20.86984 -19.19053 -18.02039 -16.37218 -15.94176 -15.83926 -15.23730 -14.91211 -14.64255 -14.55769 -14.14155 -13.89899 -13.51568 -13.12721 -12.90141 -12.60910 -12.42612 -12.22136 -11.92964 -11.84255 -11.61329 -11.14781 -11.09990 -10.78774 -10.69120 -10.39640 -9.96554 -9.61386 -9.25078 -9.02853 -8.77268 -8.70394 -8.15963 -8.07294 -6.05137 -4.05796 0.69852 1.30680 1.71981 2.90152 3.34715 3.39587 3.46045 4.06517 4.15905 4.40611 4.79357 4.87914 4.96982 5.06424 5.25422 5.31526 5.31771 5.33549 5.37075 5.52208 5.63715 5.68874 5.74182 5.86229 5.95826 5.98731 6.10768 6.26089 6.31119 7.09768 7.13758 7.18629 7.49607 7.78973 7.86937 8.23128 8.68050 9.09023 9.59051 11.06586 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.004451 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.165850 B = 6288.946028 C = 7271.747598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.041 3.959 3 N -0.471 5.471 4 C 0.060 3.940 5 C -0.204 4.204 6 C 0.132 3.868 7 N -0.522 5.522 8 C 0.023 3.977 9 C 0.061 3.939 10 C 0.067 3.933 11 O -0.379 6.379 12 C 0.195 3.805 13 C -0.510 4.510 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 S 0.095 5.905 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.181 0.819 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.001 0.999 36 H 0.003 0.997 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 -15.610 -7.197 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.237 4.237 3 N -0.185 5.185 4 C -0.090 4.090 5 C -0.325 4.325 6 C 0.002 3.998 7 N -0.247 5.247 8 C -0.125 4.125 9 C -0.066 4.066 10 C -0.011 4.011 11 O -0.299 6.299 12 C 0.120 3.880 13 C -0.548 4.548 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.733 3.267 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 S 0.348 5.652 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.096 0.904 25 H 0.198 0.802 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.977 -15.593 -6.838 22.028 hybrid contribution 0.894 0.773 0.066 1.183 sum -13.082 -14.820 -6.772 20.896 Atomic orbital electron populations 1.20413 0.85461 1.03924 1.03799 1.27002 1.01613 0.90935 1.04119 1.66315 1.05173 1.31394 1.15655 1.21826 0.90702 0.96344 1.00127 1.25753 0.98853 0.95968 1.11923 1.20489 0.88930 0.99892 0.90529 1.61840 1.04041 1.44819 1.13959 1.22480 0.99520 0.91487 0.99047 1.22199 0.86466 0.96195 1.01786 1.22236 0.96536 0.90382 0.91931 1.87950 1.71934 1.26294 1.43696 1.20164 0.91320 0.79361 0.97121 1.21063 1.28636 0.97746 1.07355 0.91578 1.24930 0.95075 0.97678 0.96805 1.69963 1.32196 1.18330 1.33530 0.86366 0.79023 0.79292 0.82008 1.20533 1.21122 1.19607 1.83763 0.98598 1.13187 1.69667 0.89688 0.89362 0.90372 0.80195 0.93952 0.88286 0.96120 0.90964 0.91544 0.89862 0.93955 0.94247 0.94733 0.98073 0.97925 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.46 36.00 0.38 -0.24 16 2 C 0.04 0.51 7.39 -13.46 -0.10 0.41 16 3 N -0.47 -7.22 10.54 -11.87 -0.13 -7.35 16 4 C 0.06 0.94 11.25 -19.18 -0.22 0.72 16 5 C -0.20 -2.80 5.31 -35.92 -0.19 -3.00 16 6 C 0.13 1.74 5.32 -4.98 -0.03 1.71 16 7 N -0.52 -7.87 4.62 -244.38 -1.13 -9.00 16 8 C 0.02 0.29 9.21 60.07 0.55 0.85 16 9 C 0.06 0.89 5.39 -3.82 -0.02 0.87 16 10 C 0.07 1.24 6.13 37.16 0.23 1.46 16 11 O -0.38 -9.29 10.27 -35.23 -0.36 -9.65 16 12 C 0.19 5.43 5.69 36.00 0.20 5.64 16 13 C -0.51 -15.36 9.43 -34.44 -0.32 -15.69 16 14 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 17 Si 0.91 22.40 29.54 -169.99 -5.02 17.37 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 S 0.09 1.06 21.98 -107.50 -2.36 -1.31 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 26 H 0.04 0.48 8.07 -51.93 -0.42 0.06 16 27 H 0.10 1.34 6.58 -51.93 -0.34 0.99 16 28 H 0.02 0.22 8.07 -51.93 -0.42 -0.20 16 29 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 30 H 0.07 0.86 6.48 -51.93 -0.34 0.52 16 31 H 0.08 1.22 7.74 -51.93 -0.40 0.81 16 32 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.61 6.68 -51.93 -0.35 0.27 16 35 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -33.66 325.10 -8.57 -42.23 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -5.59 Total: -4.82 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.39 Total: -5.72 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.52 Total: -43.01 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.65 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.36 Total: -1.31 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.66 -8.57 -42.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338911853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.979 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds