Wall clock time and date at job start Mon Mar 30 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29033 * 124.91469 * 2 1 4 4 C 1.31786 * 117.12135 * 179.97438 * 3 2 1 5 5 C 1.33634 * 114.50411 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.03921 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47672 * 89.99904 * 6 5 4 8 8 C 1.46901 * 111.00120 * 66.04374 * 7 6 5 9 9 C 1.46902 * 111.00332 * 190.00440 * 7 6 5 10 10 C 1.52998 * 109.47376 * 75.86896 * 9 7 6 11 11 O 1.42907 * 109.47115 * 64.43799 * 10 9 7 12 12 C 1.42894 * 113.99866 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47190 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99872 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00444 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99857 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47157 * 90.00209 * 17 15 13 19 19 H 1.48500 * 109.47139 * 209.99403 * 17 15 13 20 20 H 1.48497 * 109.47463 * 329.99793 * 17 15 13 21 21 S 1.70980 * 124.91840 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47507 * 269.99785 * 1 2 3 23 23 H 1.08999 * 109.47309 * 30.00208 * 1 2 3 24 24 H 1.08997 * 109.47117 * 149.99841 * 1 2 3 25 25 H 1.07993 * 122.74211 * 180.26772 * 4 3 2 26 26 H 1.08999 * 109.47142 * 210.00187 * 6 5 4 27 27 H 1.09003 * 109.47247 * 329.99364 * 6 5 4 28 28 H 1.08995 * 109.47298 * 54.76228 * 8 7 6 29 29 H 1.09003 * 109.47105 * 174.76504 * 8 7 6 30 30 H 1.08997 * 109.47146 * 294.75996 * 8 7 6 31 31 H 1.09003 * 109.46926 * 195.86986 * 9 7 6 32 32 H 1.09002 * 109.46600 * 315.86647 * 9 7 6 33 33 H 1.08998 * 109.47100 * 184.43849 * 10 9 7 34 34 H 1.09000 * 109.47206 * 304.43832 * 10 9 7 35 35 H 1.09000 * 109.47205 * 299.99852 * 12 11 10 36 36 H 1.08998 * 109.47360 * 60.00097 * 12 11 10 37 37 H 0.96996 * 120.00006 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3574 -0.8993 0.0004 7 7 5.8196 -1.0615 1.3853 8 6 5.0750 -2.1285 2.0673 9 6 7.2656 -1.3162 1.4313 10 6 8.0218 -0.0107 1.1770 11 8 7.7546 0.9090 2.2377 12 6 8.4170 2.1672 2.0966 13 6 8.0653 3.0537 3.2634 14 1 7.4018 2.6925 4.0353 15 6 8.5896 4.3263 3.3451 16 7 9.3971 4.7663 2.4049 17 14 8.1541 5.4248 4.7918 18 1 9.1381 5.2175 5.8846 19 1 8.1849 6.8457 4.3612 20 1 6.7935 5.0847 5.2797 21 16 2.4856 -1.4020 0.0006 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 4.2530 1.7001 0.0048 26 1 5.4057 -1.8593 -0.5135 27 1 5.9949 -0.1797 -0.5135 28 1 5.1452 -3.0485 1.4871 29 1 5.4985 -2.2907 3.0585 30 1 4.0288 -1.8379 2.1624 31 1 7.5347 -1.7067 2.4128 32 1 7.5307 -2.0449 0.6653 33 1 9.0919 -0.2134 1.1329 34 1 7.6944 0.4205 0.2310 35 1 9.4953 2.0094 2.0718 36 1 8.0982 2.6439 1.1696 37 1 9.7663 5.6614 2.4625 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338911853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:44 Heat of formation + Delta-G solvation = -23.216312 kcal Electronic energy + Delta-G solvation = -18243.529594 eV Core-core repulsion = 15340.001567 eV Total energy + Delta-G solvation = -2903.528028 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.74387 -39.22015 -37.73670 -34.91284 -33.49781 -31.30651 -30.29290 -28.93632 -27.04195 -25.27724 -24.47032 -24.14426 -22.09408 -20.21683 -18.99562 -18.62238 -17.46201 -17.19969 -16.67259 -16.20852 -16.11908 -15.74256 -15.52654 -15.31610 -14.78299 -14.49997 -13.88700 -13.68098 -13.57771 -13.39672 -13.24241 -13.10063 -12.93284 -12.76045 -12.75400 -12.36073 -12.28462 -12.10975 -11.72281 -11.23934 -10.85006 -10.61653 -10.24443 -10.14301 -9.71061 -9.20060 -8.31765 -6.43221 -0.28996 0.36496 0.71886 1.38240 1.41279 1.53402 1.81815 2.34835 2.99618 3.01963 3.26925 3.27835 3.79422 4.01309 4.15549 4.18045 4.29110 4.34171 4.56403 4.60578 4.62725 4.62754 4.67390 4.71416 4.83286 4.85532 4.96406 4.99698 5.03397 5.20875 5.24701 5.55806 5.98203 6.04982 6.09837 6.58497 6.78301 6.88701 7.29227 8.80617 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.004451 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.165850 B = 6288.946028 C = 7271.747598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.034 3.966 3 N -0.511 5.511 4 C 0.033 3.967 5 C -0.218 4.218 6 C 0.134 3.866 7 N -0.556 5.556 8 C 0.026 3.974 9 C 0.071 3.929 10 C 0.056 3.944 11 O -0.396 6.396 12 C 0.211 3.789 13 C -0.545 4.545 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.980 3.020 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.268 1.268 21 S 0.162 5.838 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.107 0.893 25 H 0.157 0.843 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.036 0.964 35 H -0.015 1.015 36 H -0.019 1.019 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 -17.267 -6.766 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.244 4.244 3 N -0.227 5.227 4 C -0.117 4.117 5 C -0.339 4.339 6 C 0.004 3.996 7 N -0.281 5.281 8 C -0.122 4.122 9 C -0.056 4.056 10 C -0.022 4.022 11 O -0.315 6.315 12 C 0.136 3.864 13 C -0.583 4.583 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.193 1.193 21 S 0.416 5.584 22 H 0.116 0.884 23 H 0.107 0.893 24 H 0.125 0.875 25 H 0.174 0.826 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.002 0.998 36 H -0.002 1.002 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.263 -17.284 -6.420 23.936 hybrid contribution 1.251 1.190 -0.144 1.733 sum -14.012 -16.094 -6.564 22.326 Atomic orbital electron populations 1.20636 0.82657 1.05426 1.05026 1.27745 1.03394 0.90996 1.02226 1.66307 1.05238 1.33320 1.17813 1.21667 0.91066 0.96774 1.02233 1.25896 1.00457 0.96196 1.11362 1.20479 0.88396 1.00778 0.89908 1.61721 1.04417 1.46649 1.15277 1.22455 0.98735 0.91767 0.99197 1.22104 0.86099 0.94283 1.03102 1.22634 0.98064 0.90974 0.90483 1.87899 1.71715 1.25675 1.46260 1.19748 0.90304 0.80821 0.95537 1.21377 1.29573 0.99195 1.08150 0.92454 1.25913 0.94395 0.98899 0.99852 1.70064 1.32583 1.19089 1.35274 0.85237 0.78997 0.77258 0.78259 1.18997 1.19825 1.19283 1.83405 0.95839 1.10915 1.68208 0.88427 0.89265 0.87480 0.82579 0.91233 0.89572 0.93530 0.91087 0.92094 0.89815 0.90099 0.93290 0.94551 0.99779 1.00152 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.46 71.23 0.75 -0.34 16 2 C 0.03 0.79 7.39 88.52 0.65 1.44 16 3 N -0.51 -16.01 10.54 -191.45 -2.02 -18.02 16 4 C 0.03 1.08 11.25 83.65 0.94 2.02 16 5 C -0.22 -5.91 5.31 24.64 0.13 -5.78 16 6 C 0.13 3.42 5.32 85.56 0.46 3.87 16 7 N -0.56 -16.16 4.62 -927.08 -4.28 -20.44 16 8 C 0.03 0.61 9.21 127.69 1.18 1.78 16 9 C 0.07 1.98 5.39 86.30 0.47 2.45 16 10 C 0.06 2.07 6.13 71.98 0.44 2.51 16 11 O -0.40 -20.00 10.27 -148.98 -1.53 -21.53 16 12 C 0.21 12.29 5.69 71.24 0.41 12.69 16 13 C -0.55 -33.80 9.43 25.60 0.24 -33.56 16 14 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 15 C 0.01 0.46 5.46 84.65 0.46 0.92 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.98 46.03 29.54 68.60 2.03 48.06 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 S 0.16 3.27 21.98 -56.49 -1.24 2.03 16 22 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.16 5.57 8.06 -2.91 -0.02 5.54 16 26 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 27 H 0.09 2.37 6.58 -2.39 -0.02 2.35 16 28 H 0.05 0.83 8.07 -2.39 -0.02 0.81 16 29 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 30 H 0.06 1.46 6.48 -2.39 -0.02 1.44 16 31 H 0.08 2.32 7.74 -2.39 -0.02 2.30 16 32 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.04 1.33 6.68 -2.39 -0.02 1.31 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.19 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.37 325.10 0.40 -73.97 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.05 Total: 5.03 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 6.12 Total: -12.00 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -6.02 Total: -95.57 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -1.53 Total: -21.53 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.24 Total: 2.03 kcal Total: -74.37 0.40 -73.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338911853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.758 kcal (2) G-P(sol) polarization free energy of solvation -74.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds