Wall clock time and date at job start Mon Mar 30 2020 05:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00028 * 2 1 4 4 C 1.52997 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47474 * 63.91542 * 4 3 2 6 6 C 1.36686 * 120.00025 * 264.01631 * 5 4 3 7 7 H 1.07999 * 120.00356 * 139.82361 * 6 5 4 8 8 C 1.39159 * 120.00205 * 319.81731 * 6 5 4 9 9 N 1.31298 * 120.00365 * 167.55504 * 8 6 5 10 10 Si 1.86805 * 119.99687 * 347.55899 * 8 6 5 11 11 H 1.48501 * 109.47161 * 91.20215 * 10 8 6 12 12 H 1.48496 * 109.46854 * 211.20084 * 10 8 6 13 13 H 1.48501 * 109.47157 * 331.20176 * 10 8 6 14 14 C 1.34776 * 120.00041 * 84.01022 * 5 4 3 15 15 O 1.21646 * 119.99501 * 5.37600 * 14 5 4 16 16 C 1.47317 * 120.00501 * 185.37142 * 14 5 4 17 17 C 1.36826 * 126.90064 * 174.35434 * 16 14 5 18 18 C 1.41762 * 103.81148 * 180.25890 * 17 16 14 19 19 O 1.35731 * 126.77813 * 179.73497 * 18 17 16 20 20 C 1.42901 * 117.00045 * 180.02562 * 19 18 17 21 21 N 1.30584 * 106.44930 * 359.63186 * 18 17 16 22 22 O 1.20879 * 111.91547 * 0.39484 * 21 18 17 23 23 H 1.08989 * 109.47320 * 60.00007 * 1 2 3 24 24 H 1.09006 * 109.46932 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46950 * 299.99414 * 1 2 3 26 26 H 1.08998 * 109.46787 * 60.00461 * 3 2 1 27 27 H 1.08997 * 109.46680 * 300.00281 * 3 2 1 28 28 H 1.09002 * 109.46834 * 303.91363 * 4 3 2 29 29 H 1.08993 * 109.46995 * 183.92039 * 4 3 2 30 30 H 0.96998 * 120.00160 * 180.02562 * 9 8 6 31 31 H 1.08007 * 128.09391 * 359.97438 * 17 16 14 32 32 H 1.09002 * 109.47276 * 179.97438 * 20 19 18 33 33 H 1.08996 * 109.47206 * 299.99670 * 20 19 18 34 34 H 1.09007 * 109.47018 * 59.99926 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9739 0.5409 -1.2414 6 6 4.2126 -0.8047 -1.2659 7 1 3.9063 -1.3921 -2.1189 8 6 4.8503 -1.4179 -0.1918 9 7 4.8640 -2.7274 -0.0969 10 14 5.6868 -0.3779 1.1152 11 1 4.7236 -0.0863 2.2072 12 1 6.8507 -1.1175 1.6662 13 1 6.1512 0.8968 0.5113 14 6 4.1418 1.2755 -2.3589 15 8 4.0246 2.4855 -2.3145 16 6 4.4672 0.6132 -3.6339 17 6 4.5615 1.2025 -4.8652 18 6 4.8878 0.1281 -5.7305 19 8 5.0856 0.1960 -7.0716 20 6 5.4069 -1.0240 -7.7426 21 7 4.9628 -0.9396 -4.9823 22 8 4.7311 -0.6943 -3.8216 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8527 0.5842 0.8520 29 1 3.9786 2.1780 0.0696 30 1 5.3083 -3.1548 0.6520 31 1 4.4161 2.2422 -5.1192 32 1 5.5385 -0.8295 -8.8070 33 1 6.3295 -1.4331 -7.3309 34 1 4.5972 -1.7402 -7.6019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704785112.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:03 Heat of formation + Delta-G solvation = -45.492520 kcal Electronic energy + Delta-G solvation = -21426.420924 eV Core-core repulsion = 17943.340962 eV Total energy + Delta-G solvation = -3483.079962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.80614 -40.85577 -39.82187 -38.63273 -36.92734 -34.14564 -33.99583 -32.95119 -30.95595 -28.54817 -27.28367 -27.06578 -25.15059 -24.12896 -23.43657 -21.49089 -20.24073 -18.86430 -18.51246 -17.86472 -17.59322 -17.37591 -16.81673 -16.54516 -16.42146 -16.08170 -16.03035 -15.46843 -15.36494 -14.71447 -14.48731 -14.20544 -13.67104 -13.40909 -13.12594 -13.08098 -12.84048 -12.56446 -12.40034 -12.33022 -11.94372 -11.68063 -11.30163 -10.85838 -10.77536 -10.49376 -10.33862 -9.85945 -8.46451 -6.13613 -0.15508 1.11170 1.23244 1.35775 1.43493 1.70564 1.85779 2.07005 2.18862 2.58106 2.91049 3.08396 3.23311 3.84525 3.91652 4.11187 4.15295 4.21872 4.26469 4.37677 4.40969 4.50775 4.56367 4.59404 4.61785 4.73607 4.74941 4.86758 5.32907 5.90962 6.01581 6.20481 6.37732 6.78457 7.09438 7.28092 7.49467 8.66506 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.006875 C = 0.006099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.636130 B = 4071.531275 C = 4589.741051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.084 3.916 5 N -0.432 5.432 6 C -0.332 4.332 7 H 0.090 0.910 8 C 0.034 3.966 9 N -0.888 5.888 10 Si 0.931 3.069 11 H -0.247 1.247 12 H -0.286 1.286 13 H -0.258 1.258 14 C 0.540 3.460 15 O -0.586 6.586 16 C -0.027 4.027 17 C -0.182 4.182 18 C 0.200 3.800 19 O -0.288 6.288 20 C 0.025 3.975 21 N -0.426 5.426 22 O 0.122 5.878 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.281 0.719 31 H 0.204 0.796 32 H 0.143 0.857 33 H 0.055 0.945 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 6.070 -4.362 8.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.020 4.020 4 C -0.037 4.037 5 N -0.150 5.150 6 C -0.460 4.460 7 H 0.108 0.892 8 C -0.172 4.172 9 N -0.524 5.524 10 Si 0.756 3.244 11 H -0.173 1.173 12 H -0.213 1.213 13 H -0.182 1.182 14 C 0.328 3.672 15 O -0.472 6.472 16 C -0.093 4.093 17 C -0.206 4.206 18 C 0.003 3.997 19 O -0.195 6.195 20 C -0.069 4.069 21 N -0.153 5.153 22 O 0.061 5.939 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.221 0.779 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.896 5.256 -4.646 7.589 hybrid contribution 0.115 0.473 0.447 0.661 sum -2.780 5.728 -4.199 7.627 Atomic orbital electron populations 1.22875 0.80264 1.03201 1.00613 1.88122 1.20817 1.27771 1.95434 1.22849 0.92501 0.85188 1.01507 1.22177 0.94909 0.99337 0.87295 1.43611 1.55044 1.08025 1.08284 1.19071 1.38402 0.81164 1.07383 0.89246 1.25956 0.95540 0.96251 0.99443 1.69704 1.40712 1.10161 1.31856 0.86117 0.78644 0.79600 0.80013 1.17295 1.21266 1.18234 1.16818 0.82620 0.85356 0.82416 1.90694 1.58850 1.12383 1.85285 1.24066 1.03841 0.84191 0.97173 1.22237 1.08462 1.01651 0.88207 1.21963 1.00208 0.90295 0.87189 1.86176 1.85786 1.35815 1.11676 1.23350 1.00792 0.84193 0.98596 1.73976 1.25323 1.24230 0.91798 1.85417 1.64632 1.24752 1.19140 0.93982 0.89552 0.92240 0.89394 0.93318 0.90537 0.87646 0.90861 0.77885 0.83872 0.92637 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.94 10.41 -148.98 -1.55 -17.49 16 3 C 0.06 2.00 6.24 71.98 0.45 2.45 16 4 C 0.08 3.43 4.22 86.38 0.36 3.80 16 5 N -0.43 -20.49 2.14 -639.44 -1.37 -21.85 16 6 C -0.33 -17.64 8.42 84.16 0.71 -16.93 16 7 H 0.09 5.26 5.98 -2.91 -0.02 5.24 16 8 C 0.03 1.78 5.41 84.99 0.46 2.24 16 9 N -0.89 -49.85 13.95 21.70 0.30 -49.55 16 10 Si 0.93 40.59 24.68 68.60 1.69 42.28 16 11 H -0.25 -9.82 6.65 99.48 0.66 -9.16 16 12 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.26 -11.08 7.04 99.48 0.70 -10.38 16 14 C 0.54 25.06 7.58 86.63 0.66 25.71 16 15 O -0.59 -27.19 16.57 -4.18 -0.07 -27.26 16 16 C -0.03 -1.18 6.94 24.33 0.17 -1.01 16 17 C -0.18 -6.85 10.97 22.81 0.25 -6.60 16 18 C 0.20 7.49 7.99 85.75 0.69 8.17 16 19 O -0.29 -8.88 10.57 -90.54 -0.96 -9.83 16 20 C 0.02 0.57 10.73 113.37 1.22 1.79 16 21 N -0.43 -18.18 11.50 -171.91 -1.98 -20.16 16 22 O 0.12 5.76 8.17 65.25 0.53 6.29 16 23 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 3.19 3.09 -2.39 -0.01 3.18 16 29 H 0.11 3.91 7.54 -2.39 -0.02 3.89 16 30 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16 32 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -65.00 296.38 3.89 -61.11 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.08 Total: 14.82 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 6.21 Total: 21.64 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.04 Total: -91.56 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.04 Total: -48.30 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.69 Total: 42.28 kcal Total: -65.00 3.89 -61.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704785112.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.620 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds