Wall clock time and date at job start Mon Mar 30 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48499 * 109.46831 * 240.00278 * 3 2 1 5 5 H 1.48494 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46969 * 120.00268 * 3 2 1 7 7 C 1.37870 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00056 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00258 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00235 * 89.99833 * 10 9 7 12 12 O 1.21280 * 119.99898 * 188.28398 * 11 10 9 13 13 C 1.50702 * 120.00112 * 8.28539 * 11 10 9 14 14 H 1.08999 * 109.47105 * 29.37346 * 13 11 10 15 15 N 1.46905 * 109.47114 * 149.37257 * 13 11 10 16 16 C 1.52997 * 109.47204 * 269.37090 * 13 11 10 17 17 C 1.52993 * 109.47309 * 174.81005 * 16 13 11 18 18 C 1.50700 * 109.47532 * 180.02562 * 17 16 13 19 19 O 1.20823 * 119.99790 * 359.97438 * 18 17 16 20 20 O 1.34227 * 120.00181 * 180.02562 * 18 17 16 21 21 C 1.46504 * 119.99862 * 269.99690 * 10 9 7 22 22 C 1.52998 * 117.49855 * 195.82598 * 21 10 9 23 23 C 1.52994 * 117.50085 * 127.16141 * 21 10 9 24 24 H 0.97008 * 119.99875 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46990 * 59.99722 * 9 7 2 26 26 H 1.09004 * 109.46556 * 300.00006 * 9 7 2 27 27 H 1.00898 * 110.99932 * 60.00148 * 15 13 11 28 28 H 1.00896 * 110.99505 * 183.95176 * 15 13 11 29 29 H 1.08991 * 109.47385 * 294.81434 * 16 13 11 30 30 H 1.09000 * 109.47011 * 54.81094 * 16 13 11 31 31 H 1.09005 * 109.47244 * 300.00462 * 17 16 13 32 32 H 1.09000 * 109.47011 * 60.00089 * 17 16 13 33 33 H 0.96705 * 116.99728 * 179.97438 * 20 18 17 34 34 H 1.08998 * 115.54734 * 341.49512 * 21 10 9 35 35 H 1.08999 * 117.50212 * 359.97438 * 22 21 10 36 36 H 1.09002 * 117.49882 * 145.02084 * 22 21 10 37 37 H 1.08996 * 117.50266 * 214.98070 * 23 21 10 38 38 H 1.09009 * 117.49619 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6409 -4.1249 1.1666 12 8 3.5379 -4.9411 1.1720 13 6 2.0160 -3.6833 2.4650 14 1 0.9767 -3.4044 2.2916 15 7 2.0720 -4.7852 3.4350 16 6 2.7822 -2.4792 3.0162 17 6 2.0723 -1.9508 4.2642 18 6 2.8266 -0.7643 4.8068 19 8 3.8294 -0.3811 4.2525 20 8 2.3850 -0.1340 5.9065 21 6 2.6789 -4.1694 -1.2693 22 6 3.3619 -5.5379 -1.2283 23 6 4.1918 -4.2748 -1.4713 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 3.0258 -5.0623 3.6127 28 1 1.6021 -4.5362 4.2924 29 1 3.7966 -2.7819 3.2759 30 1 2.8195 -1.6951 2.2600 31 1 1.0579 -1.6481 4.0044 32 1 2.0351 -2.7349 5.0204 33 1 2.9024 0.6216 6.2171 34 1 2.0695 -3.9371 -2.1427 35 1 3.4576 -6.0238 -0.2573 36 1 3.2022 -6.2057 -2.0749 37 1 4.5777 -4.1121 -2.4776 38 1 4.8331 -3.9293 -0.6603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085840885.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:14 Heat of formation + Delta-G solvation = -96.629075 kcal Electronic energy + Delta-G solvation = -21857.282685 eV Core-core repulsion = 18507.818370 eV Total energy + Delta-G solvation = -3349.464315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19193 -39.66972 -36.60211 -35.95740 -35.09302 -33.90466 -32.17304 -31.05235 -27.16381 -26.88078 -23.69533 -22.89436 -21.78722 -21.52812 -20.39208 -18.52871 -17.86313 -16.83916 -16.48274 -16.18798 -16.02267 -15.75912 -14.85050 -14.49022 -14.34486 -14.07544 -13.56262 -13.38365 -13.11668 -12.53506 -12.34643 -12.14365 -12.01869 -11.69414 -11.42270 -11.31809 -11.06618 -10.87952 -10.75717 -10.61428 -10.48811 -10.40680 -10.23255 -9.68901 -9.59533 -8.84487 -8.58767 -8.37680 -7.51567 -6.22371 -4.28986 2.37853 3.04399 3.24711 3.27604 3.32831 3.38022 3.74935 4.30991 4.56849 4.89545 4.95889 5.09991 5.15335 5.18220 5.37164 5.52559 5.62427 5.65333 5.69044 5.74620 5.86505 6.21875 6.25054 6.29307 6.57719 6.58219 6.71567 6.78360 6.91966 7.09574 7.31279 7.58334 7.66857 7.73890 8.00198 8.02504 8.29430 8.76206 8.98351 9.38636 10.83361 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.009109 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.662432 B = 3073.255417 C = 4630.081124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.567 5.567 11 C 0.531 3.469 12 O -0.558 6.558 13 C 0.080 3.920 14 H 0.110 0.890 15 N -0.832 5.832 16 C -0.145 4.145 17 C -0.108 4.108 18 C 0.478 3.522 19 O -0.507 6.507 20 O -0.522 6.522 21 C 0.089 3.911 22 C -0.201 4.201 23 C -0.188 4.188 24 H 0.266 0.734 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.347 0.653 28 H 0.340 0.660 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.406 0.594 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -3.992 7.205 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.296 5.296 11 C 0.319 3.681 12 O -0.439 6.439 13 C -0.034 4.034 14 H 0.128 0.872 15 N -0.364 5.364 16 C -0.185 4.185 17 C -0.146 4.146 18 C 0.320 3.680 19 O -0.394 6.394 20 O -0.334 6.334 21 C -0.016 4.016 22 C -0.239 4.239 23 C -0.227 4.227 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.161 0.839 28 H 0.153 0.847 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.266 -4.919 6.350 8.132 hybrid contribution 1.243 2.476 0.670 2.850 sum 2.509 -2.443 7.020 7.845 Atomic orbital electron populations 1.69911 1.05884 1.27415 1.49636 1.24879 0.94792 0.99075 0.94679 0.86687 0.79769 0.82768 0.79261 1.19994 1.21162 1.19740 1.21419 0.93646 0.90221 1.51903 0.91966 1.19516 0.87463 0.82410 0.98819 1.47607 1.44893 1.33947 1.03118 1.20108 0.82356 0.80570 0.85078 1.90436 1.30619 1.35692 1.87144 1.21375 1.01525 0.89287 0.91256 0.87250 1.58654 1.23165 1.39172 1.15389 1.22237 0.98533 1.00279 0.97404 1.21342 1.01354 0.93305 0.98580 1.23558 0.83383 0.83954 0.77141 1.90752 1.25722 1.65033 1.57922 1.84539 1.58041 1.46825 1.44039 1.21498 0.93886 0.97992 0.88231 1.23760 1.04038 0.91343 1.04730 1.23121 0.95206 1.02601 1.01749 0.92461 0.94478 0.94063 0.83899 0.84677 0.91374 0.86674 0.86866 0.88596 0.73596 0.85977 0.84953 0.90187 0.89572 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 13.29 55.43 0.74 -22.93 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -13.44 7.50 -34.44 -0.26 -13.70 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.24 5.42 5.11 -5.19 -0.03 5.40 16 10 N -0.57 -11.83 2.82 -167.47 -0.47 -12.30 16 11 C 0.53 10.73 6.62 -10.99 -0.07 10.66 16 12 O -0.56 -11.91 12.12 5.56 0.07 -11.84 16 13 C 0.08 1.36 2.53 -68.86 -0.17 1.18 16 14 H 0.11 1.91 6.03 -51.93 -0.31 1.59 16 15 N -0.83 -11.86 9.04 -5.65 -0.05 -11.91 16 16 C -0.14 -2.47 4.13 -26.74 -0.11 -2.58 16 17 C -0.11 -1.48 5.58 -27.89 -0.16 -1.63 16 18 C 0.48 7.27 8.33 36.01 0.30 7.57 16 19 O -0.51 -9.73 16.74 -18.75 -0.31 -10.05 16 20 O -0.52 -6.22 13.42 -39.25 -0.53 -6.74 16 21 C 0.09 1.71 6.62 -67.93 -0.45 1.26 16 22 C -0.20 -3.53 9.63 -26.69 -0.26 -3.79 16 23 C -0.19 -3.42 9.88 -26.69 -0.26 -3.69 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 25 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 26 H 0.04 0.94 5.71 -51.93 -0.30 0.65 16 27 H 0.35 4.98 8.55 -39.29 -0.34 4.64 16 28 H 0.34 3.79 7.56 -39.29 -0.30 3.49 16 29 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.11 2.43 6.06 -51.93 -0.31 2.12 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.10 0.99 6.87 -51.93 -0.36 0.63 16 33 H 0.41 3.18 9.10 45.56 0.41 3.59 16 34 H 0.12 2.18 8.09 -51.93 -0.42 1.76 16 35 H 0.13 2.61 5.27 -52.00 -0.27 2.34 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 1.89 7.57 -51.92 -0.39 1.50 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -30.57 317.16 -6.60 -37.18 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -4.24 Total: 15.72 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.57 Total: 2.36 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.21 Total: -47.14 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.77 Total: -28.63 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.57 -6.60 -37.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085840885.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.451 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds