Wall clock time and date at job start Mon Mar 30 2020 04:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00182 * 2 1 4 4 H 1.48495 * 109.47455 * 89.99873 * 3 2 1 5 5 H 1.48499 * 109.47132 * 209.99985 * 3 2 1 6 6 H 1.48504 * 109.47127 * 329.99845 * 3 2 1 7 7 C 1.38950 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99850 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99882 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00113 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47340 * 179.97438 * 12 10 9 14 14 C 1.46892 * 110.99939 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47075 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.02069 * 306.46121 * 15 14 13 17 17 C 1.54266 * 110.03195 * 67.90142 * 15 14 13 18 18 C 1.54889 * 104.19882 * 142.89110 * 17 15 14 19 19 C 1.54885 * 102.74852 * 322.06234 * 18 17 15 20 20 C 1.53874 * 110.03508 * 185.06442 * 15 14 13 21 21 H 1.09002 * 110.03291 * 121.42711 * 20 15 14 22 22 C 1.50702 * 110.02981 * 0.02562 * 20 15 14 23 23 O 1.20825 * 119.99952 * 273.41271 * 22 20 15 24 24 O 1.34233 * 120.00411 * 93.41788 * 22 20 15 25 25 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00235 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46807 * 300.00229 * 12 10 9 28 28 H 1.08999 * 109.46550 * 59.99864 * 12 10 9 29 29 H 1.00901 * 110.99483 * 56.04776 * 13 12 10 30 30 H 1.08999 * 109.47484 * 300.00134 * 14 13 12 31 31 H 1.08995 * 109.47245 * 60.00386 * 14 13 12 32 32 H 1.09001 * 110.48708 * 261.57283 * 17 15 14 33 33 H 1.09003 * 110.48465 * 24.21412 * 17 15 14 34 34 H 1.08996 * 110.76068 * 203.73963 * 18 17 15 35 35 H 1.09005 * 110.74935 * 80.37205 * 18 17 15 36 36 H 1.09005 * 110.48259 * 279.25745 * 19 18 17 37 37 H 1.09003 * 110.59860 * 156.67319 * 19 18 17 38 38 H 0.96690 * 116.99861 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5457 1.4401 -0.7000 6 1 1.4456 2.6526 -0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5607 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0017 14 6 7.5187 -3.7948 0.0011 15 6 7.9900 -5.2504 0.0011 16 1 7.5263 -5.7928 0.8250 17 6 7.6336 -5.9213 -1.3415 18 6 8.8377 -6.8508 -1.6333 19 6 10.0437 -6.0123 -1.1417 20 6 9.5224 -5.3083 0.1281 21 1 9.8024 -5.8794 1.0133 22 6 10.0864 -3.9134 0.2139 23 8 10.3422 -3.3020 -0.7963 24 8 10.3045 -3.3502 1.4127 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3634 0.0007 27 1 5.9240 -1.8568 -0.8889 28 1 5.9239 -1.8568 0.8911 29 1 5.6748 -4.2722 -0.7795 30 1 7.8953 -3.2914 -0.8893 31 1 7.8960 -3.2904 0.8906 32 1 6.7169 -6.5033 -1.2457 33 1 7.5307 -5.1723 -2.1267 34 1 8.9186 -7.0547 -2.7010 35 1 8.7557 -7.7785 -1.0669 36 1 10.3301 -5.2781 -1.8947 37 1 10.8874 -6.6589 -0.9004 38 1 10.6676 -2.4541 1.4171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089443497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:05 Heat of formation + Delta-G solvation = -136.898347 kcal Electronic energy + Delta-G solvation = -20739.131314 eV Core-core repulsion = 17387.920793 eV Total energy + Delta-G solvation = -3351.210521 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.03653 -38.61588 -38.07655 -36.28049 -35.13674 -33.86102 -31.66493 -30.45723 -29.73288 -26.80710 -24.52157 -23.38478 -22.89500 -20.84543 -19.69260 -19.30299 -18.39742 -18.19823 -17.03171 -16.41911 -15.87191 -15.67038 -15.32894 -14.89090 -14.73284 -14.10212 -13.79343 -13.44891 -13.34477 -12.94278 -12.88253 -12.34321 -12.09404 -12.05732 -11.86517 -11.64843 -11.39188 -11.30305 -11.15987 -11.06121 -10.94080 -10.76189 -10.58816 -10.50378 -9.96847 -9.56570 -8.58983 -8.19198 -8.14116 -6.30488 -3.81830 1.96416 2.78929 3.03497 3.07766 3.15644 3.74594 3.94614 4.11030 4.15321 4.33426 4.62679 4.87391 4.98404 5.04666 5.08677 5.15745 5.22868 5.27474 5.32203 5.35017 5.56789 5.59269 5.64112 5.76691 5.78823 5.82561 5.93653 5.97684 6.00429 6.15964 6.28333 7.06509 7.56489 7.59313 7.66464 8.15099 8.60545 8.95531 9.43147 9.83372 10.82663 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.003769 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.338532 B = 7428.038158 C = 8069.809364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.276 1.276 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.564 6.564 12 C 0.047 3.953 13 N -0.663 5.663 14 C 0.050 3.950 15 C -0.076 4.076 16 H 0.100 0.900 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.082 4.082 21 H 0.106 0.894 22 C 0.488 3.512 23 O -0.515 6.515 24 O -0.516 6.516 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.351 0.649 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.805 -7.971 -0.281 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.446 6.446 12 C -0.086 4.086 13 N -0.296 5.296 14 C -0.079 4.079 15 C -0.095 4.095 16 H 0.118 0.882 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.102 4.102 21 H 0.125 0.875 22 C 0.331 3.669 23 O -0.403 6.403 24 O -0.328 6.328 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.171 0.829 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 22.024 -8.855 0.120 23.738 hybrid contribution 1.041 2.473 -0.804 2.801 sum 23.066 -6.382 -0.684 23.942 Atomic orbital electron populations 1.69622 1.05633 1.27490 1.49405 1.25034 0.95494 0.97965 0.97645 0.86669 0.79758 0.84040 0.78915 1.19577 1.19553 1.20166 1.19439 0.79232 0.96655 1.48057 0.86254 1.42203 1.07543 1.06153 1.67107 1.19681 0.88122 0.84581 0.83967 1.90560 1.69418 1.30916 1.53707 1.21717 0.95110 0.90505 1.01271 1.60082 1.05432 1.12667 1.51439 1.22334 0.89459 0.95494 1.00658 1.21762 0.90679 0.96898 1.00130 0.88162 1.22502 0.98757 0.98783 0.96079 1.22468 0.93903 0.98086 1.01372 1.22472 0.98360 0.99110 0.95526 1.21789 0.96762 0.89641 1.02016 0.87539 1.23395 0.73546 0.89450 0.80556 1.90710 1.48581 1.64081 1.36934 1.84589 1.77476 1.36246 1.34498 0.91614 0.79690 0.93803 0.89539 0.82867 0.94671 0.90948 0.90214 0.91304 0.90939 0.90978 0.89641 0.90894 0.73308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.96 55.50 0.77 -25.17 16 2 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.31 -8.75 10.16 -14.93 -0.15 -8.90 16 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 9 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 10 C 0.45 10.47 7.82 -10.98 -0.09 10.38 16 11 O -0.56 -15.34 15.78 5.55 0.09 -15.25 16 12 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 13 N -0.66 -10.60 6.13 -115.06 -0.71 -11.31 16 14 C 0.05 0.64 3.86 -3.83 -0.01 0.62 16 15 C -0.08 -0.78 3.15 -89.50 -0.28 -1.06 16 16 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.12 -1.19 5.56 -25.07 -0.14 -1.33 16 18 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 19 C -0.12 -0.93 6.31 -25.08 -0.16 -1.09 16 20 C -0.08 -0.72 3.40 -90.66 -0.31 -1.03 16 21 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 22 C 0.49 5.02 5.14 36.01 0.19 5.20 16 23 O -0.52 -6.72 15.79 -18.75 -0.30 -7.02 16 24 O -0.52 -4.33 12.95 -39.27 -0.51 -4.84 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.35 5.75 7.67 -39.29 -0.30 5.45 16 30 H 0.04 0.48 7.12 -51.93 -0.37 0.11 16 31 H 0.07 0.91 6.87 -51.93 -0.36 0.56 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.82 6.89 -51.93 -0.36 0.47 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.41 1.87 9.10 45.56 0.41 2.29 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -34.60 314.15 -6.48 -41.09 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -4.55 Total: 13.74 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.25 Total: 3.55 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.01 Total: -50.88 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.72 Total: -27.11 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.60 -6.48 -41.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089443497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.812 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds