Wall clock time and date at job start Mon Mar 30 2020 04:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00182 * 2 1 4 4 H 1.48495 * 109.47455 * 89.99873 * 3 2 1 5 5 H 1.48499 * 109.47132 * 209.99985 * 3 2 1 6 6 H 1.48504 * 109.47127 * 329.99845 * 3 2 1 7 7 C 1.38950 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99850 * 359.97438 * 7 2 1 9 9 N 1.37096 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99882 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00380 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00113 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47340 * 179.97438 * 12 10 9 14 14 C 1.46892 * 110.99939 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47075 * 180.02562 * 14 13 12 16 16 H 1.08997 * 110.02069 * 306.46121 * 15 14 13 17 17 C 1.54266 * 110.03195 * 67.90142 * 15 14 13 18 18 C 1.54889 * 104.19882 * 142.89110 * 17 15 14 19 19 C 1.54885 * 102.74852 * 322.06234 * 18 17 15 20 20 C 1.53874 * 110.03508 * 185.06442 * 15 14 13 21 21 H 1.09002 * 110.03291 * 121.42711 * 20 15 14 22 22 C 1.50702 * 110.02981 * 0.02562 * 20 15 14 23 23 O 1.20825 * 119.99952 * 273.41271 * 22 20 15 24 24 O 1.34233 * 120.00411 * 93.41788 * 22 20 15 25 25 H 0.97001 * 120.00022 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00235 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46807 * 300.00229 * 12 10 9 28 28 H 1.08999 * 109.46550 * 59.99864 * 12 10 9 29 29 H 1.00901 * 110.99483 * 56.04776 * 13 12 10 30 30 H 1.08999 * 109.47484 * 300.00134 * 14 13 12 31 31 H 1.08995 * 109.47245 * 60.00386 * 14 13 12 32 32 H 1.09001 * 110.48708 * 261.57283 * 17 15 14 33 33 H 1.09003 * 110.48465 * 24.21412 * 17 15 14 34 34 H 1.08996 * 110.76068 * 203.73963 * 18 17 15 35 35 H 1.09005 * 110.74935 * 80.37205 * 18 17 15 36 36 H 1.09005 * 110.48259 * 279.25745 * 19 18 17 37 37 H 1.09003 * 110.59860 * 156.67319 * 19 18 17 38 38 H 0.96690 * 116.99861 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4000 5 1 3.5457 1.4401 -0.7000 6 1 1.4456 2.6526 -0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5607 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0017 14 6 7.5187 -3.7948 0.0011 15 6 7.9900 -5.2504 0.0011 16 1 7.5263 -5.7928 0.8250 17 6 7.6336 -5.9213 -1.3415 18 6 8.8377 -6.8508 -1.6333 19 6 10.0437 -6.0123 -1.1417 20 6 9.5224 -5.3083 0.1281 21 1 9.8024 -5.8794 1.0133 22 6 10.0864 -3.9134 0.2139 23 8 10.3422 -3.3020 -0.7963 24 8 10.3045 -3.3502 1.4127 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3634 0.0007 27 1 5.9240 -1.8568 -0.8889 28 1 5.9239 -1.8568 0.8911 29 1 5.6748 -4.2722 -0.7795 30 1 7.8953 -3.2914 -0.8893 31 1 7.8960 -3.2904 0.8906 32 1 6.7169 -6.5033 -1.2457 33 1 7.5307 -5.1723 -2.1267 34 1 8.9186 -7.0547 -2.7010 35 1 8.7557 -7.7785 -1.0669 36 1 10.3301 -5.2781 -1.8947 37 1 10.8874 -6.6589 -0.9004 38 1 10.6676 -2.4541 1.4171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089443497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:05 Heat of formation + Delta-G solvation = -164.838419 kcal Electronic energy + Delta-G solvation = -20740.342887 eV Core-core repulsion = 17387.920793 eV Total energy + Delta-G solvation = -3352.422094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80930 -40.34092 -39.00899 -37.07392 -36.44866 -35.78268 -33.77388 -31.41297 -30.51964 -28.28320 -26.06687 -24.46414 -23.86216 -21.56052 -21.35203 -20.51812 -20.10431 -19.04113 -18.13033 -17.38874 -17.23501 -17.00994 -16.65634 -16.10933 -15.75084 -15.46227 -15.22322 -14.89234 -14.60400 -14.15161 -14.09385 -13.97579 -13.54580 -13.15232 -12.86390 -12.76760 -12.57324 -12.43566 -12.18116 -12.00009 -11.97081 -11.84281 -11.65886 -11.54254 -11.50628 -11.31271 -10.48189 -10.27332 -9.44672 -8.43261 -6.04377 1.19352 1.28947 1.33928 1.42889 1.90927 2.14969 2.21185 2.63138 3.12388 3.28121 3.45211 3.61390 3.88745 4.07749 4.16845 4.26433 4.37439 4.41290 4.45977 4.49178 4.52570 4.54062 4.65465 4.76657 4.87660 5.03229 5.19900 5.23218 5.29611 5.44768 5.50199 5.64372 5.84196 5.96686 6.28914 6.56830 6.84913 7.00979 7.36226 7.91830 8.74306 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029119 B = 0.003769 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.338532 B = 7428.038158 C = 8069.809364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.235 1.235 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.057 0.943 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.611 6.611 12 C 0.059 3.941 13 N -0.676 5.676 14 C 0.056 3.944 15 C -0.074 4.074 16 H 0.101 0.899 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.080 4.080 21 H 0.130 0.870 22 C 0.489 3.511 23 O -0.547 6.547 24 O -0.514 6.514 25 H 0.280 0.720 26 H 0.389 0.611 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.346 0.654 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.950 -6.894 0.189 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.158 1.158 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.075 0.925 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.309 5.309 14 C -0.072 4.072 15 C -0.093 4.093 16 H 0.119 0.881 17 C -0.164 4.164 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.100 4.100 21 H 0.148 0.852 22 C 0.333 3.667 23 O -0.438 6.438 24 O -0.327 6.327 25 H 0.089 0.911 26 H 0.225 0.775 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 25.208 -7.777 0.608 26.388 hybrid contribution 0.013 2.034 -0.919 2.232 sum 25.221 -5.743 -0.311 25.869 Atomic orbital electron populations 1.69798 1.08088 1.29309 1.50090 1.26099 0.96469 1.02650 0.95973 0.85371 0.79372 0.76811 0.80011 1.18008 1.15802 1.19840 1.19026 0.81391 0.95048 1.50526 0.92510 1.42025 1.05906 1.07532 1.67669 1.20849 0.90704 0.83420 0.81317 1.90538 1.71259 1.32671 1.55088 1.21642 0.90004 0.92027 1.03645 1.60112 1.07517 1.11826 1.51439 1.22356 0.87111 0.97281 1.00484 1.21744 0.91888 0.95254 1.00388 0.88095 1.22498 0.99620 0.98868 0.95455 1.22461 0.92539 0.98111 1.02040 1.22457 0.99135 0.98906 0.94649 1.21861 0.95314 0.89359 1.03451 0.85195 1.23647 0.72845 0.89740 0.80425 1.90704 1.50080 1.64972 1.38047 1.84558 1.77160 1.37533 1.33456 0.91057 0.77515 0.91290 0.86896 0.83473 0.95284 0.90451 0.90754 0.92708 0.90432 0.89409 0.91511 0.88709 0.71436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.96 21.66 0.30 -56.21 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 39.22 27.74 68.60 1.90 41.12 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.23 -8.13 6.52 99.48 0.65 -7.49 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 8 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 9 N -0.59 -28.44 5.09 -306.98 -1.56 -30.00 16 10 C 0.45 20.85 7.82 87.66 0.69 21.54 16 11 O -0.61 -34.40 15.78 -3.07 -0.05 -34.45 16 12 C 0.06 1.93 6.17 85.56 0.53 2.46 16 13 N -0.68 -20.83 6.13 -517.95 -3.17 -24.01 16 14 C 0.06 1.33 3.86 86.30 0.33 1.67 16 15 C -0.07 -1.39 3.15 -10.07 -0.03 -1.42 16 16 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 17 C -0.13 -2.32 5.56 31.67 0.18 -2.14 16 18 C -0.11 -1.51 6.91 31.88 0.22 -1.29 16 19 C -0.11 -1.56 6.31 31.67 0.20 -1.36 16 20 C -0.08 -1.21 3.40 -10.82 -0.04 -1.25 16 21 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 22 C 0.49 9.01 5.14 71.24 0.37 9.38 16 23 O -0.55 -13.51 15.79 21.97 0.35 -13.17 16 24 O -0.51 -7.24 12.95 -51.44 -0.67 -7.90 16 25 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.39 15.62 5.76 -92.71 -0.53 15.09 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.35 11.29 7.67 -89.69 -0.69 10.60 16 30 H 0.03 0.74 7.12 -2.39 -0.02 0.72 16 31 H 0.08 1.75 6.87 -2.39 -0.02 1.73 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.15 7.76 -2.39 -0.02 1.13 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 1.20 6.89 -2.38 -0.02 1.18 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.42 2.80 9.10 -74.06 -0.67 2.13 16 Total: -1.00 -79.34 314.15 0.01 -79.32 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.85 Total: 36.76 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 3.76 Total: 8.53 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.43 Total: -110.22 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.37 Total: -55.52 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.12 kcal Total: -79.34 0.01 -79.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089443497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.517 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds