Wall clock time and date at job start Mon Mar 30 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47756 * 2 1 4 4 N 1.46494 * 109.47289 * 120.00215 * 2 1 3 5 5 C 1.46500 * 120.00053 * 119.24297 * 4 2 1 6 6 C 1.50704 * 109.47209 * 270.00253 * 5 4 2 7 7 H 1.07996 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47302 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47061 * 119.99835 * 10 8 6 13 13 H 1.48496 * 109.47315 * 239.99832 * 10 8 6 14 14 C 1.34775 * 120.00240 * 299.24689 * 4 2 1 15 15 O 1.21586 * 119.99615 * 4.63077 * 14 4 2 16 16 N 1.34775 * 120.00278 * 184.63997 * 14 4 2 17 17 C 1.46503 * 119.99898 * 174.76357 * 16 14 4 18 18 C 1.50699 * 115.55251 * 56.88333 * 17 16 14 19 19 O 1.20819 * 120.00251 * 181.13277 * 18 17 16 20 20 O 1.34228 * 119.99975 * 1.13097 * 18 17 16 21 21 C 1.52999 * 117.49779 * 271.20786 * 17 16 14 22 22 C 1.53005 * 117.49456 * 202.54994 * 17 16 14 23 23 H 1.09006 * 109.46756 * 305.74095 * 1 2 3 24 24 H 1.09004 * 109.46905 * 65.73121 * 1 2 3 25 25 H 1.08996 * 109.47521 * 185.73501 * 1 2 3 26 26 H 1.09009 * 109.46979 * 240.00192 * 2 1 3 27 27 H 1.08993 * 109.47613 * 183.77047 * 3 2 1 28 28 H 1.09006 * 109.46716 * 303.77378 * 3 2 1 29 29 H 1.09001 * 109.46594 * 63.76180 * 3 2 1 30 30 H 1.08994 * 109.47488 * 30.00213 * 5 4 2 31 31 H 1.09007 * 109.47521 * 150.00263 * 5 4 2 32 32 H 0.97000 * 119.99994 * 180.02562 * 9 8 6 33 33 H 0.97005 * 120.00157 * 354.48113 * 16 14 4 34 34 H 0.96695 * 117.00229 * 179.97438 * 20 18 17 35 35 H 1.09003 * 117.49664 * 0.02562 * 21 17 16 36 36 H 1.08997 * 117.49786 * 145.01770 * 21 17 16 37 37 H 1.09004 * 117.49641 * 214.97282 * 22 17 16 38 38 H 1.08994 * 117.50035 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8468 -1.8913 1.0617 6 6 1.9621 -3.1108 1.0264 7 1 0.8899 -3.0023 1.0974 8 6 2.5215 -4.3651 0.9044 9 7 3.8272 -4.4973 0.8184 10 14 1.4248 -5.8767 0.8614 11 1 0.0038 -5.4608 0.9749 12 1 1.6286 -6.5998 -0.4197 13 1 1.7703 -6.7714 1.9951 14 6 1.7053 -0.2215 2.4202 15 8 0.9495 0.7241 2.5338 16 7 2.2303 -0.8003 3.5183 17 6 1.9827 -0.2211 4.8410 18 6 0.5329 -0.0696 5.2232 19 8 0.2367 0.4182 6.2882 20 8 -0.4294 -0.4766 4.3806 21 6 2.9599 0.8456 5.3392 22 6 2.9761 -0.5554 5.9557 23 1 -0.3633 0.6003 0.8342 24 1 -0.3633 0.4224 -0.9369 25 1 -0.3634 -1.0225 0.1027 26 1 1.8933 -0.5138 -0.8901 27 1 3.1280 1.4432 -0.0676 28 1 1.6226 1.9755 -0.8543 29 1 1.7329 1.9364 0.9218 30 1 3.4231 -1.8337 0.1383 31 1 3.5270 -1.9604 1.9107 32 1 4.2207 -5.3797 0.7323 33 1 2.7687 -1.6028 3.4332 34 1 -1.3446 -0.3593 4.6698 35 1 3.7867 1.1167 4.6826 36 1 2.5542 1.6568 5.9437 37 1 2.5809 -0.6653 6.9656 38 1 3.8134 -1.2066 5.7050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203515190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:50 Heat of formation + Delta-G solvation = -87.834954 kcal Electronic energy + Delta-G solvation = -22154.957373 eV Core-core repulsion = 18805.874400 eV Total energy + Delta-G solvation = -3349.082973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46607 -39.23786 -37.14810 -35.78875 -34.99913 -33.44367 -32.35582 -30.45962 -26.96268 -26.51987 -25.04238 -23.01404 -22.60842 -21.90836 -20.01729 -19.07324 -17.94511 -16.83376 -16.72895 -16.41718 -15.48453 -15.15361 -14.63507 -14.42985 -14.30108 -13.94140 -13.76024 -12.91454 -12.70878 -12.52224 -12.19986 -11.85946 -11.61512 -11.52067 -11.42735 -11.17419 -11.13165 -10.97872 -10.91927 -10.78399 -10.55390 -10.39143 -10.32086 -10.06337 -9.67559 -9.00080 -8.58992 -8.54172 -7.56854 -6.19675 -4.26896 2.30118 3.15720 3.20391 3.27391 3.29482 3.35612 3.81688 4.03786 4.31640 4.59817 4.75054 4.91600 5.13048 5.19166 5.55324 5.55887 5.71564 5.79709 5.83540 5.91579 6.05080 6.17040 6.27938 6.41448 6.56127 6.76062 6.79476 6.81276 6.94539 7.02656 7.16641 7.48460 7.76644 7.89015 8.05405 8.24004 8.67503 8.91434 9.39466 9.48279 10.86164 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.007533 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.380181 B = 3716.224426 C = 4489.081972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 C -0.166 4.166 4 N -0.611 5.611 5 C 0.241 3.759 6 C -0.533 4.533 7 H 0.063 0.937 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.720 3.280 15 O -0.600 6.600 16 N -0.709 5.709 17 C 0.113 3.887 18 C 0.528 3.472 19 O -0.535 6.535 20 O -0.480 6.480 21 C -0.145 4.145 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.413 0.587 34 H 0.401 0.599 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 7.212 4.846 8.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 C -0.224 4.224 4 N -0.345 5.345 5 C 0.120 3.880 6 C -0.572 4.572 7 H 0.081 0.919 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.422 3.578 15 O -0.480 6.480 16 N -0.368 5.368 17 C 0.021 3.979 18 C 0.371 3.629 19 O -0.425 6.425 20 O -0.288 6.288 21 C -0.184 4.184 22 C -0.178 4.178 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.252 0.748 34 H 0.258 0.742 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.220 7.808 4.978 9.340 hybrid contribution -0.854 -1.496 -0.054 1.724 sum -2.075 6.312 4.924 8.270 Atomic orbital electron populations 1.22183 0.95808 1.02511 1.01562 1.20636 0.94077 0.91815 0.87116 1.22225 1.00274 0.97160 1.02780 1.47426 1.54442 1.29813 1.02848 1.19320 0.89872 0.80894 0.97896 1.21618 0.94030 0.90703 1.50834 0.91881 1.24955 0.95037 0.99090 0.94853 1.69932 1.09663 1.23855 1.49759 0.86473 0.80928 0.82609 0.77668 1.19687 1.20915 1.20936 1.15642 0.79856 0.81860 0.80404 1.90741 1.39856 1.31624 1.85817 1.44531 1.57924 1.32210 1.02150 1.19476 0.86316 1.05889 0.86223 1.22164 0.87717 0.72641 0.80412 1.90668 1.83658 1.43475 1.24737 1.84691 1.19017 1.76382 1.48740 1.23493 0.99917 0.92795 1.02152 1.23439 0.98861 0.99279 0.96239 0.90624 0.93501 0.92573 0.90040 0.93448 0.92786 0.90704 0.94601 0.95370 0.92639 0.74766 0.74163 0.87069 0.87280 0.86771 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.03 37.15 0.34 -2.60 16 2 C 0.17 3.13 3.28 -67.93 -0.22 2.91 16 3 C -0.17 -2.73 9.16 37.16 0.34 -2.39 16 4 N -0.61 -12.67 2.41 -173.17 -0.42 -13.09 16 5 C 0.24 5.54 4.96 -5.19 -0.03 5.52 16 6 C -0.53 -13.61 9.39 -34.44 -0.32 -13.93 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 10 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.72 14.81 7.07 -86.92 -0.61 14.19 16 15 O -0.60 -12.94 10.74 -14.80 -0.16 -13.10 16 16 N -0.71 -13.06 5.25 -53.50 -0.28 -13.34 16 17 C 0.11 1.82 2.49 -132.97 -0.33 1.49 16 18 C 0.53 9.18 7.40 36.01 0.27 9.45 16 19 O -0.53 -9.65 17.22 -18.74 -0.32 -9.98 16 20 O -0.48 -8.23 11.27 -46.02 -0.52 -8.75 16 21 C -0.14 -1.91 10.00 -26.69 -0.27 -2.18 16 22 C -0.14 -1.72 10.00 -26.69 -0.27 -1.98 16 23 H 0.07 1.48 6.26 -51.93 -0.32 1.15 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 1.50 7.79 -51.92 -0.40 1.10 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.37 6.17 -51.93 -0.32 1.05 16 30 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 31 H 0.03 0.66 6.27 -51.93 -0.33 0.33 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 33 H 0.41 7.73 6.53 -40.82 -0.27 7.46 16 34 H 0.40 4.88 9.10 45.56 0.41 5.30 16 35 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.11 1.39 8.03 -51.93 -0.42 0.97 16 37 H 0.11 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -30.45 320.38 -6.92 -37.36 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -4.56 Total: 11.86 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.21 Total: 12.01 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.04 Total: -49.67 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.00 Total: -31.83 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.45 -6.92 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203515190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.473 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds