Wall clock time and date at job start Mon Mar 30 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47756 * 2 1 4 4 N 1.46494 * 109.47289 * 120.00215 * 2 1 3 5 5 C 1.46500 * 120.00053 * 119.24297 * 4 2 1 6 6 C 1.50704 * 109.47209 * 270.00253 * 5 4 2 7 7 H 1.07996 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00248 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47302 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47061 * 119.99835 * 10 8 6 13 13 H 1.48496 * 109.47315 * 239.99832 * 10 8 6 14 14 C 1.34775 * 120.00240 * 299.24689 * 4 2 1 15 15 O 1.21586 * 119.99615 * 4.63077 * 14 4 2 16 16 N 1.34775 * 120.00278 * 184.63997 * 14 4 2 17 17 C 1.46503 * 119.99898 * 174.76357 * 16 14 4 18 18 C 1.50699 * 115.55251 * 56.88333 * 17 16 14 19 19 O 1.20819 * 120.00251 * 181.13277 * 18 17 16 20 20 O 1.34228 * 119.99975 * 1.13097 * 18 17 16 21 21 C 1.52999 * 117.49779 * 271.20786 * 17 16 14 22 22 C 1.53005 * 117.49456 * 202.54994 * 17 16 14 23 23 H 1.09006 * 109.46756 * 305.74095 * 1 2 3 24 24 H 1.09004 * 109.46905 * 65.73121 * 1 2 3 25 25 H 1.08996 * 109.47521 * 185.73501 * 1 2 3 26 26 H 1.09009 * 109.46979 * 240.00192 * 2 1 3 27 27 H 1.08993 * 109.47613 * 183.77047 * 3 2 1 28 28 H 1.09006 * 109.46716 * 303.77378 * 3 2 1 29 29 H 1.09001 * 109.46594 * 63.76180 * 3 2 1 30 30 H 1.08994 * 109.47488 * 30.00213 * 5 4 2 31 31 H 1.09007 * 109.47521 * 150.00263 * 5 4 2 32 32 H 0.97000 * 119.99994 * 180.02562 * 9 8 6 33 33 H 0.97005 * 120.00157 * 354.48113 * 16 14 4 34 34 H 0.96695 * 117.00229 * 179.97438 * 20 18 17 35 35 H 1.09003 * 117.49664 * 0.02562 * 21 17 16 36 36 H 1.08997 * 117.49786 * 145.01770 * 21 17 16 37 37 H 1.09004 * 117.49641 * 214.97282 * 22 17 16 38 38 H 1.08994 * 117.50035 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8468 -1.8913 1.0617 6 6 1.9621 -3.1108 1.0264 7 1 0.8899 -3.0023 1.0974 8 6 2.5215 -4.3651 0.9044 9 7 3.8272 -4.4973 0.8184 10 14 1.4248 -5.8767 0.8614 11 1 0.0038 -5.4608 0.9749 12 1 1.6286 -6.5998 -0.4197 13 1 1.7703 -6.7714 1.9951 14 6 1.7053 -0.2215 2.4202 15 8 0.9495 0.7241 2.5338 16 7 2.2303 -0.8003 3.5183 17 6 1.9827 -0.2211 4.8410 18 6 0.5329 -0.0696 5.2232 19 8 0.2367 0.4182 6.2882 20 8 -0.4294 -0.4766 4.3806 21 6 2.9599 0.8456 5.3392 22 6 2.9761 -0.5554 5.9557 23 1 -0.3633 0.6003 0.8342 24 1 -0.3633 0.4224 -0.9369 25 1 -0.3634 -1.0225 0.1027 26 1 1.8933 -0.5138 -0.8901 27 1 3.1280 1.4432 -0.0676 28 1 1.6226 1.9755 -0.8543 29 1 1.7329 1.9364 0.9218 30 1 3.4231 -1.8337 0.1383 31 1 3.5270 -1.9604 1.9107 32 1 4.2207 -5.3797 0.7323 33 1 2.7687 -1.6028 3.4332 34 1 -1.3446 -0.3593 4.6698 35 1 3.7867 1.1167 4.6826 36 1 2.5542 1.6568 5.9437 37 1 2.5809 -0.6653 6.9656 38 1 3.8134 -1.2066 5.7050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203515190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:50 Heat of formation + Delta-G solvation = -107.208589 kcal Electronic energy + Delta-G solvation = -22155.797477 eV Core-core repulsion = 18805.874400 eV Total energy + Delta-G solvation = -3349.923077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81087 -40.74388 -38.39723 -37.18960 -36.55687 -35.13028 -34.04851 -31.98792 -28.81767 -27.92846 -26.33221 -24.83878 -23.69398 -23.37965 -21.33867 -20.52909 -19.31449 -18.63554 -18.17874 -18.11085 -16.90461 -16.51625 -16.28815 -16.03721 -15.71326 -15.35576 -15.04435 -14.42894 -14.33533 -13.96117 -13.80560 -13.56480 -13.19583 -12.84587 -12.75189 -12.66032 -12.64191 -12.42258 -12.29478 -12.22117 -12.09174 -11.92087 -11.79074 -11.58350 -11.51613 -10.66409 -10.50041 -9.98674 -9.22985 -8.17425 -6.31521 1.03039 1.38945 1.43471 1.53162 1.82259 2.01018 2.37006 2.48219 2.76631 3.07542 3.12610 3.59194 3.80165 4.11936 4.12261 4.36844 4.47399 4.52659 4.60404 4.79383 4.83820 4.86384 5.01419 5.05965 5.07918 5.09384 5.21451 5.34784 5.50294 5.51690 5.65488 5.71876 5.93079 6.10598 6.30329 6.74029 7.00972 7.19172 7.42806 7.88482 8.86373 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015104 B = 0.007533 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.380181 B = 3716.224426 C = 4489.081972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 C -0.152 4.152 4 N -0.616 5.616 5 C 0.256 3.744 6 C -0.539 4.539 7 H 0.046 0.954 8 C 0.025 3.975 9 N -0.917 5.917 10 Si 0.951 3.049 11 H -0.277 1.277 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.715 3.285 15 O -0.612 6.612 16 N -0.706 5.706 17 C 0.072 3.928 18 C 0.524 3.476 19 O -0.548 6.548 20 O -0.497 6.497 21 C -0.133 4.133 22 C -0.112 4.112 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.409 0.591 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 7.289 5.088 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C -0.211 4.211 4 N -0.351 5.351 5 C 0.134 3.866 6 C -0.577 4.577 7 H 0.064 0.936 8 C -0.176 4.176 9 N -0.556 5.556 10 Si 0.777 3.223 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.417 3.583 15 O -0.493 6.493 16 N -0.363 5.363 17 C -0.018 4.018 18 C 0.368 3.632 19 O -0.440 6.440 20 O -0.307 6.307 21 C -0.172 4.172 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.248 0.752 34 H 0.277 0.723 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.986 7.897 5.235 9.526 hybrid contribution -0.965 -1.490 -0.128 1.780 sum -1.951 6.408 5.108 8.423 Atomic orbital electron populations 1.22060 0.95433 1.00885 1.02504 1.20884 0.94423 0.93015 0.86417 1.22086 1.00514 0.95485 1.02968 1.47449 1.54428 1.29349 1.03827 1.18983 0.89553 0.81128 0.96927 1.21709 0.93395 0.91918 1.50725 0.93576 1.25552 0.96069 1.01312 0.94625 1.69995 1.10699 1.24555 1.50360 0.85617 0.79040 0.79796 0.77827 1.20230 1.20476 1.20314 1.15789 0.79897 0.81883 0.80711 1.90726 1.40402 1.32199 1.86023 1.44491 1.57306 1.31847 1.02687 1.19900 0.86506 1.09140 0.86295 1.22441 0.88267 0.72262 0.80198 1.90649 1.83969 1.44249 1.25123 1.84665 1.20417 1.76413 1.49254 1.23571 0.98650 0.93202 1.01750 1.23620 0.97372 0.98555 0.95395 0.92200 0.90446 0.94852 0.90036 0.93093 0.90050 0.92557 0.96112 0.95518 0.92371 0.75166 0.72277 0.86302 0.86824 0.85469 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.03 71.98 0.65 -4.71 16 2 C 0.16 5.73 3.28 44.99 0.15 5.88 16 3 C -0.15 -4.80 9.16 71.98 0.66 -4.14 16 4 N -0.62 -25.58 2.41 -820.05 -1.97 -27.55 16 5 C 0.26 11.84 4.96 85.63 0.42 12.27 16 6 C -0.54 -27.61 9.39 25.60 0.24 -27.37 16 7 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 8 C 0.02 1.28 5.46 84.65 0.46 1.74 16 9 N -0.92 -48.83 13.29 21.45 0.28 -48.54 16 10 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 14 C 0.72 29.35 7.07 179.06 1.27 30.62 16 15 O -0.61 -26.38 10.74 15.23 0.16 -26.21 16 16 N -0.71 -25.70 5.25 -441.44 -2.32 -28.02 16 17 C 0.07 2.26 2.49 2.86 0.01 2.27 16 18 C 0.52 17.97 7.40 71.24 0.53 18.50 16 19 O -0.55 -19.36 17.22 21.98 0.38 -18.98 16 20 O -0.50 -17.06 11.27 -44.93 -0.51 -17.57 16 21 C -0.13 -3.27 10.00 30.62 0.31 -2.96 16 22 C -0.11 -2.48 10.00 30.62 0.31 -2.17 16 23 H 0.06 2.32 6.26 -2.38 -0.01 2.30 16 24 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 2.96 7.79 -2.38 -0.02 2.94 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.06 2.00 6.17 -2.39 -0.01 1.99 16 30 H 0.02 1.02 7.91 -2.39 -0.02 1.00 16 31 H 0.03 1.25 6.27 -2.38 -0.01 1.24 16 32 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.41 15.22 6.53 -92.70 -0.61 14.62 16 34 H 0.42 10.21 9.10 -74.06 -0.67 9.53 16 35 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.11 2.69 8.03 -2.39 -0.02 2.67 16 37 H 0.13 2.51 8.07 -2.38 -0.02 2.49 16 38 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -63.88 320.38 2.87 -61.01 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.19 Total: 32.24 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 5.00 Total: 29.92 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.00 Total: -104.11 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: 0.04 Total: -62.76 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -63.88 2.87 -61.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203515190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.196 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds